Wall clock time and date at job start Tue Mar 31 2020 17:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42903 * 109.46839 * 2 1 4 4 C 1.52998 * 109.47177 * 120.00256 * 2 1 3 5 5 C 1.50702 * 109.47211 * 304.99853 * 4 2 1 6 6 C 1.35347 * 126.75032 * 125.00235 * 5 4 2 7 7 N 1.35316 * 106.17543 * 180.02562 * 6 5 4 8 8 C 1.46493 * 125.86847 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46970 * 122.95651 * 8 7 6 10 10 C 1.50693 * 115.55038 * 39.77052 * 9 8 7 11 11 H 1.08001 * 119.99815 * 274.02455 * 10 9 8 12 12 C 1.37882 * 120.00275 * 94.02322 * 10 9 8 13 13 N 1.31511 * 120.00014 * 174.28320 * 12 10 9 14 14 Si 1.86804 * 119.99702 * 354.28116 * 12 10 9 15 15 H 1.48499 * 109.47144 * 94.67458 * 14 12 10 16 16 H 1.48505 * 109.46817 * 214.67634 * 14 12 10 17 17 H 1.48498 * 109.46802 * 334.67206 * 14 12 10 18 18 C 1.53002 * 117.49724 * 254.06258 * 9 8 7 19 19 C 1.53000 * 60.00057 * 252.51046 * 18 9 8 20 20 N 1.28714 * 108.26342 * 0.02562 * 7 6 5 21 21 N 1.28638 * 110.17798 * 359.72273 * 20 7 6 22 22 C 1.50698 * 109.46866 * 240.00149 * 2 1 3 23 23 C 1.33391 * 125.20065 * 89.99665 * 22 2 1 24 24 C 1.38427 * 114.92019 * 179.97438 * 23 22 2 25 25 C 1.33388 * 114.92141 * 0.25221 * 24 23 22 26 26 S 1.75885 * 125.20499 * 269.95834 * 22 2 1 27 27 H 1.08999 * 109.46487 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46675 * 299.99420 * 1 2 3 29 29 H 1.08990 * 109.47382 * 59.99864 * 1 2 3 30 30 H 0.96702 * 113.99420 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47082 * 65.00244 * 4 2 1 32 32 H 1.09001 * 109.46896 * 184.99897 * 4 2 1 33 33 H 1.08000 * 126.91102 * 359.96513 * 6 5 4 34 34 H 1.08999 * 109.47462 * 242.95290 * 8 7 6 35 35 H 1.08997 * 109.47437 * 2.95731 * 8 7 6 36 36 H 0.97002 * 119.99576 * 180.02562 * 13 12 10 37 37 H 1.08996 * 117.49964 * 359.97438 * 18 9 8 38 38 H 1.08999 * 117.49777 * 145.02243 * 18 9 8 39 39 H 1.09003 * 117.49975 * 252.51372 * 19 18 9 40 40 H 1.08997 * 117.50315 * 107.48537 * 19 18 9 41 41 H 1.08001 * 122.54280 * 359.97438 * 23 22 2 42 42 H 1.08002 * 122.53741 * 179.97438 * 24 23 22 43 43 H 1.08001 * 125.20517 * 179.75577 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.4392 -0.0860 2.4766 6 6 0.7379 -0.7109 3.4510 7 7 0.3983 0.2469 4.3444 8 6 -0.3708 0.0399 5.5740 9 6 0.4431 0.5305 6.7732 10 6 1.2167 1.8053 6.5559 11 1 2.2049 1.7698 6.1214 12 6 0.6632 3.0169 6.9118 13 7 1.3789 4.1170 6.8276 14 14 -1.1035 3.0958 7.5136 15 1 -1.1237 3.0448 8.9976 16 1 -1.7271 4.3625 7.0532 17 1 -1.8641 1.9429 6.9681 18 6 1.0670 -0.5286 7.6843 19 6 -0.1356 0.2843 8.1680 20 7 0.8670 1.3711 3.9283 21 7 1.4978 1.2057 2.8195 22 6 2.0323 -0.7104 -1.2305 23 6 2.2886 -0.1289 -2.4033 24 6 2.7431 -0.9848 -3.3918 25 6 2.8509 -2.2622 -3.0232 26 16 2.3713 -2.4328 -1.3396 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 2.9704 1.4236 -0.0004 31 1 1.7518 -1.7715 1.2055 32 1 3.1264 -0.6444 1.2950 33 1 0.4970 -1.7624 3.5042 34 1 -1.3052 0.5980 5.5164 35 1 -0.5882 -1.0216 5.6923 36 1 0.9896 4.9693 7.0783 37 1 0.8973 -1.5747 7.4297 38 1 2.0374 -0.3034 8.1267 39 1 0.0436 1.0443 8.9286 40 1 -1.0961 -0.2270 8.2312 41 1 2.1518 0.9295 -2.5692 42 1 2.9873 -0.6448 -4.3873 43 1 3.1840 -3.0681 -3.6604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849144664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:33 Heat of formation + Delta-G solvation = 119.042843 kcal Electronic energy + Delta-G solvation = -26246.198147 eV Core-core repulsion = 22614.970847 eV Total energy + Delta-G solvation = -3631.227299 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.41871 -38.99280 -37.36472 -36.81497 -33.56000 -32.58500 -32.04361 -30.66132 -28.61878 -27.60138 -26.67220 -25.50981 -24.28532 -21.86363 -21.75391 -21.41962 -20.34263 -19.40300 -18.90175 -17.85562 -17.02305 -16.24685 -15.73542 -15.60401 -15.30844 -14.89975 -14.74035 -14.26951 -14.10555 -13.72185 -13.56500 -13.03081 -12.86112 -12.72524 -12.54936 -12.50667 -12.31380 -12.28248 -11.97915 -11.75632 -11.26748 -11.21340 -10.84305 -10.73517 -10.60737 -10.50313 -10.35571 -10.23506 -9.86320 -9.72005 -9.28840 -9.09164 -8.86310 -8.69515 -8.63474 -8.48907 -8.33049 -6.05533 -4.05781 0.81417 1.45122 1.83178 2.43254 2.59440 3.18751 3.25825 3.33916 3.38230 3.39548 4.28617 4.41672 4.49161 4.66286 4.76058 4.88297 5.04586 5.09105 5.16871 5.21585 5.31026 5.39738 5.44813 5.47792 5.64710 5.73248 5.77089 5.81726 5.87642 5.89581 6.01226 6.07023 6.10872 6.15894 6.26997 6.28219 6.32954 6.43622 6.60966 6.79416 6.90954 6.97326 7.43614 7.67094 7.81608 8.49689 9.00663 9.52548 9.55635 11.06969 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.002878 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.251047 B = 9727.672351 C =10289.496736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.214 3.786 3 O -0.525 6.525 4 C -0.051 4.051 5 C -0.031 4.031 6 C -0.082 4.082 7 N -0.263 5.263 8 C 0.141 3.859 9 C -0.018 4.018 10 C -0.469 4.469 11 H 0.079 0.921 12 C 0.090 3.910 13 N -0.883 5.883 14 Si 0.879 3.121 15 H -0.281 1.281 16 H -0.293 1.293 17 H -0.265 1.265 18 C -0.179 4.179 19 C -0.189 4.189 20 N -0.006 5.006 21 N -0.276 5.276 22 C -0.201 4.201 23 C -0.128 4.128 24 C -0.134 4.134 25 C -0.221 4.221 26 S 0.102 5.898 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.376 0.624 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.172 0.828 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.264 0.736 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -15.492 -15.559 21.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.170 3.830 3 O -0.330 6.330 4 C -0.091 4.091 5 C -0.169 4.169 6 C -0.233 4.233 7 N -0.055 5.055 8 C 0.019 3.981 9 C -0.020 4.020 10 C -0.507 4.507 11 H 0.097 0.903 12 C -0.114 4.114 13 N -0.519 5.519 14 Si 0.707 3.293 15 H -0.208 1.208 16 H -0.220 1.220 17 H -0.190 1.190 18 C -0.216 4.216 19 C -0.227 4.227 20 N 0.015 4.985 21 N -0.142 5.142 22 C -0.318 4.318 23 C -0.158 4.158 24 C -0.165 4.165 25 C -0.356 4.356 26 S 0.365 5.635 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.223 0.777 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.190 0.810 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.592 -14.863 -14.241 20.646 hybrid contribution -0.396 -0.238 -0.730 0.864 sum -1.988 -15.100 -14.971 21.357 Atomic orbital electron populations 1.21709 0.91524 1.02015 1.03404 1.19386 0.94721 0.82020 0.86832 1.86690 1.26633 1.23318 1.96309 1.20499 1.00537 0.98096 0.89947 1.21291 1.04864 0.92348 0.98447 1.23096 1.08786 0.97220 0.94182 1.47231 1.35267 1.05738 1.17249 1.22015 0.94163 1.00323 0.81592 1.19620 0.98385 0.97726 0.86231 1.19970 1.02714 0.86490 1.41500 0.90312 1.24880 0.96824 0.95392 0.94352 1.69877 1.36405 0.98646 1.46953 0.86920 0.86260 0.77365 0.78717 1.20766 1.21990 1.19003 1.22975 0.97451 0.94756 1.06418 1.22939 0.96411 1.03612 0.99713 1.78930 1.08189 1.06781 1.04636 1.75293 1.17441 1.15126 1.06298 1.25531 1.08510 0.96817 1.00981 1.20125 1.02072 1.01791 0.91763 1.20208 1.02812 0.92572 1.00871 1.25677 1.09911 1.00936 0.99125 1.84251 1.64680 1.06471 1.08103 0.91538 0.90848 0.91978 0.77698 0.90221 0.90011 0.81036 0.89215 0.90106 0.92561 0.90956 0.89152 0.88789 0.90598 0.83794 0.84453 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 8.51 37.16 0.32 -1.36 16 2 C 0.21 2.71 1.02 -91.77 -0.09 2.61 16 3 O -0.52 -7.60 11.64 -35.23 -0.41 -8.01 16 4 C -0.05 -0.66 4.69 -27.88 -0.13 -0.79 16 5 C -0.03 -0.53 4.96 -82.78 -0.41 -0.94 16 6 C -0.08 -1.36 11.49 -17.05 -0.20 -1.55 16 7 N -0.26 -5.28 3.37 -61.27 -0.21 -5.48 16 8 C 0.14 2.63 6.48 -4.04 -0.03 2.60 16 9 C -0.02 -0.38 1.23 -155.66 -0.19 -0.58 16 10 C -0.47 -12.69 7.14 -34.44 -0.25 -12.94 16 11 H 0.08 2.46 7.97 -52.49 -0.42 2.05 16 12 C 0.09 2.52 5.46 -17.82 -0.10 2.42 16 13 N -0.88 -26.89 13.96 55.43 0.77 -26.12 16 14 Si 0.88 21.17 24.88 -169.99 -4.23 16.94 16 15 H -0.28 -6.60 7.10 56.52 0.40 -6.20 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 17 H -0.27 -5.84 5.55 56.52 0.31 -5.53 16 18 C -0.18 -3.34 9.88 -26.73 -0.26 -3.60 16 19 C -0.19 -3.65 7.41 -26.73 -0.20 -3.85 16 20 N -0.01 -0.14 10.88 60.35 0.66 0.52 16 21 N -0.28 -6.04 11.71 33.29 0.39 -5.65 16 22 C -0.20 -2.18 5.25 -36.00 -0.19 -2.37 16 23 C -0.13 -1.32 9.63 -41.21 -0.40 -1.71 16 24 C -0.13 -1.19 10.18 -41.21 -0.42 -1.61 16 25 C -0.22 -1.88 11.23 29.04 0.33 -1.55 16 26 S 0.10 0.95 21.94 -107.50 -2.36 -1.41 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.15 7.07 -51.93 -0.37 0.78 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.38 4.45 9.04 45.56 0.41 4.87 16 31 H 0.08 0.86 7.27 -51.93 -0.38 0.48 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.17 2.07 8.06 -52.49 -0.42 1.64 16 34 H 0.09 1.70 6.83 -51.93 -0.35 1.34 16 35 H 0.08 1.17 7.87 -51.93 -0.41 0.76 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.09 1.96 6.78 -51.93 -0.35 1.61 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.14 1.45 7.91 -52.49 -0.42 1.04 16 42 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 364.70 15.07 5.50 5.50 Total: -1.00 -33.04 364.70 -7.41 -40.45 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.31 Total: 8.49 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -2.22 Total: -25.23 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 1.61 Total: -36.73 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.41 Total: -8.01 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.23 Total: 16.94 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.36 Total: -1.41 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.04 -7.41 -40.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849144664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.492 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds