Wall clock time and date at job start Tue Mar 31 2020 17:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42903 * 109.46839 * 2 1 4 4 C 1.52998 * 109.47177 * 120.00256 * 2 1 3 5 5 C 1.50702 * 109.47211 * 304.99853 * 4 2 1 6 6 C 1.35347 * 126.75032 * 125.00235 * 5 4 2 7 7 N 1.35316 * 106.17543 * 180.02562 * 6 5 4 8 8 C 1.46493 * 125.86847 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.46970 * 122.95651 * 8 7 6 10 10 C 1.50693 * 115.55038 * 39.77052 * 9 8 7 11 11 H 1.08001 * 119.99815 * 274.02455 * 10 9 8 12 12 C 1.37882 * 120.00275 * 94.02322 * 10 9 8 13 13 N 1.31511 * 120.00014 * 174.28320 * 12 10 9 14 14 Si 1.86804 * 119.99702 * 354.28116 * 12 10 9 15 15 H 1.48499 * 109.47144 * 94.67458 * 14 12 10 16 16 H 1.48505 * 109.46817 * 214.67634 * 14 12 10 17 17 H 1.48498 * 109.46802 * 334.67206 * 14 12 10 18 18 C 1.53002 * 117.49724 * 254.06258 * 9 8 7 19 19 C 1.53000 * 60.00057 * 252.51046 * 18 9 8 20 20 N 1.28714 * 108.26342 * 0.02562 * 7 6 5 21 21 N 1.28638 * 110.17798 * 359.72273 * 20 7 6 22 22 C 1.50698 * 109.46866 * 240.00149 * 2 1 3 23 23 C 1.33391 * 125.20065 * 89.99665 * 22 2 1 24 24 C 1.38427 * 114.92019 * 179.97438 * 23 22 2 25 25 C 1.33388 * 114.92141 * 0.25221 * 24 23 22 26 26 S 1.75885 * 125.20499 * 269.95834 * 22 2 1 27 27 H 1.08999 * 109.46487 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46675 * 299.99420 * 1 2 3 29 29 H 1.08990 * 109.47382 * 59.99864 * 1 2 3 30 30 H 0.96702 * 113.99420 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47082 * 65.00244 * 4 2 1 32 32 H 1.09001 * 109.46896 * 184.99897 * 4 2 1 33 33 H 1.08000 * 126.91102 * 359.96513 * 6 5 4 34 34 H 1.08999 * 109.47462 * 242.95290 * 8 7 6 35 35 H 1.08997 * 109.47437 * 2.95731 * 8 7 6 36 36 H 0.97002 * 119.99576 * 180.02562 * 13 12 10 37 37 H 1.08996 * 117.49964 * 359.97438 * 18 9 8 38 38 H 1.08999 * 117.49777 * 145.02243 * 18 9 8 39 39 H 1.09003 * 117.49975 * 252.51372 * 19 18 9 40 40 H 1.08997 * 117.50315 * 107.48537 * 19 18 9 41 41 H 1.08001 * 122.54280 * 359.97438 * 23 22 2 42 42 H 1.08002 * 122.53741 * 179.97438 * 24 23 22 43 43 H 1.08001 * 125.20517 * 179.75577 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.4392 -0.0860 2.4766 6 6 0.7379 -0.7109 3.4510 7 7 0.3983 0.2469 4.3444 8 6 -0.3708 0.0399 5.5740 9 6 0.4431 0.5305 6.7732 10 6 1.2167 1.8053 6.5559 11 1 2.2049 1.7698 6.1214 12 6 0.6632 3.0169 6.9118 13 7 1.3789 4.1170 6.8276 14 14 -1.1035 3.0958 7.5136 15 1 -1.1237 3.0448 8.9976 16 1 -1.7271 4.3625 7.0532 17 1 -1.8641 1.9429 6.9681 18 6 1.0670 -0.5286 7.6843 19 6 -0.1356 0.2843 8.1680 20 7 0.8670 1.3711 3.9283 21 7 1.4978 1.2057 2.8195 22 6 2.0323 -0.7104 -1.2305 23 6 2.2886 -0.1289 -2.4033 24 6 2.7431 -0.9848 -3.3918 25 6 2.8509 -2.2622 -3.0232 26 16 2.3713 -2.4328 -1.3396 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 2.9704 1.4236 -0.0004 31 1 1.7518 -1.7715 1.2055 32 1 3.1264 -0.6444 1.2950 33 1 0.4970 -1.7624 3.5042 34 1 -1.3052 0.5980 5.5164 35 1 -0.5882 -1.0216 5.6923 36 1 0.9896 4.9693 7.0783 37 1 0.8973 -1.5747 7.4297 38 1 2.0374 -0.3034 8.1267 39 1 0.0436 1.0443 8.9286 40 1 -1.0961 -0.2270 8.2312 41 1 2.1518 0.9295 -2.5692 42 1 2.9873 -0.6448 -4.3873 43 1 3.1840 -3.0681 -3.6604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849144664.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:31 Heat of formation + Delta-G solvation = 95.127674 kcal Electronic energy + Delta-G solvation = -26247.235186 eV Core-core repulsion = 22614.970847 eV Total energy + Delta-G solvation = -3632.264339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -43.87145 -39.92118 -38.91527 -37.68446 -34.93173 -34.16207 -33.79892 -31.83472 -29.51274 -28.93443 -27.93660 -27.50113 -25.10321 -23.36435 -23.02496 -22.75110 -21.61616 -20.66502 -20.09788 -18.74932 -18.62273 -17.49468 -17.30177 -16.87390 -16.57585 -16.21205 -15.88401 -15.52368 -15.23729 -15.02970 -14.84167 -14.70373 -14.21305 -14.07634 -13.74316 -13.47430 -13.29258 -13.20303 -13.05697 -12.93179 -12.80830 -12.63520 -12.17072 -12.13965 -12.06966 -11.93973 -11.63890 -11.60880 -11.43133 -11.05399 -10.98303 -10.80727 -10.45822 -10.31079 -9.80462 -9.54687 -9.32361 -8.19414 -6.21990 0.08476 0.72616 1.05329 1.12081 1.33640 1.38253 1.47379 1.84107 1.88015 1.92393 2.40680 3.11006 3.21315 3.31106 3.50067 3.70764 3.77865 4.00176 4.09048 4.16941 4.22421 4.28700 4.30184 4.35135 4.41522 4.61030 4.64099 4.69071 4.73993 4.80360 4.85175 4.86166 4.89212 5.00315 5.13802 5.21346 5.27224 5.40303 5.43303 5.48107 5.56229 5.60828 5.70611 6.04385 6.36418 6.81294 6.84744 7.43005 8.03410 8.98667 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024337 B = 0.002878 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.251047 B = 9727.672351 C =10289.496736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.216 3.784 3 O -0.551 6.551 4 C -0.046 4.046 5 C -0.037 4.037 6 C -0.064 4.064 7 N -0.268 5.268 8 C 0.141 3.859 9 C -0.053 4.053 10 C -0.451 4.451 11 H 0.013 0.987 12 C 0.023 3.977 13 N -0.951 5.951 14 Si 0.939 3.061 15 H -0.269 1.269 16 H -0.312 1.312 17 H -0.223 1.223 18 C -0.160 4.160 19 C -0.178 4.178 20 N -0.081 5.081 21 N -0.310 5.310 22 C -0.219 4.219 23 C -0.131 4.131 24 C -0.146 4.146 25 C -0.214 4.214 26 S 0.119 5.881 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.382 0.618 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.228 0.772 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.259 0.741 37 H 0.120 0.880 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 -20.656 -16.275 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.173 3.827 3 O -0.357 6.357 4 C -0.086 4.086 5 C -0.176 4.176 6 C -0.215 4.215 7 N -0.061 5.061 8 C 0.020 3.980 9 C -0.054 4.054 10 C -0.489 4.489 11 H 0.031 0.969 12 C -0.174 4.174 13 N -0.591 5.591 14 Si 0.764 3.236 15 H -0.194 1.194 16 H -0.240 1.240 17 H -0.145 1.145 18 C -0.197 4.197 19 C -0.216 4.216 20 N -0.060 5.060 21 N -0.175 5.175 22 C -0.336 4.336 23 C -0.162 4.162 24 C -0.176 4.176 25 C -0.349 4.349 26 S 0.382 5.618 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.230 0.770 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.245 0.755 34 H 0.104 0.896 35 H 0.159 0.841 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.599 -20.057 -14.939 25.267 hybrid contribution 0.395 1.237 -0.645 1.450 sum -3.204 -18.820 -15.585 24.644 Atomic orbital electron populations 1.21689 0.92011 1.02989 1.01603 1.19332 0.94385 0.81305 0.87681 1.86659 1.27365 1.25191 1.96495 1.20612 1.00339 0.99323 0.88280 1.21983 1.04719 0.90966 0.99943 1.23957 1.06432 0.98784 0.92279 1.47431 1.34993 1.05665 1.17996 1.22123 0.92814 1.03675 0.79377 1.19537 1.00497 0.96572 0.88823 1.19980 1.00556 0.89467 1.38896 0.96882 1.25790 1.01507 0.94874 0.95236 1.70082 1.38855 0.99424 1.50740 0.85945 0.80933 0.77916 0.78797 1.19422 1.23987 1.14536 1.23012 0.96388 0.96442 1.03883 1.23024 0.98665 1.03171 0.96726 1.78894 1.11305 1.09349 1.06408 1.75196 1.17833 1.18152 1.06369 1.25269 1.09972 0.98144 1.00255 1.20255 1.01871 1.01863 0.92209 1.20385 1.03110 0.92637 1.01472 1.26052 1.08541 1.01450 0.98850 1.84100 1.64387 1.04458 1.08827 0.89090 0.94027 0.92309 0.76988 0.87169 0.89954 0.75541 0.89576 0.84128 0.93190 0.86199 0.91480 0.91027 0.86091 0.84539 0.82594 0.79521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.51 71.98 0.61 -2.56 16 2 C 0.22 5.34 1.02 -11.54 -0.01 5.33 16 3 O -0.55 -16.71 11.64 -148.98 -1.73 -18.45 16 4 C -0.05 -1.12 4.69 29.85 0.14 -0.98 16 5 C -0.04 -1.23 4.96 41.60 0.21 -1.03 16 6 C -0.06 -1.90 11.49 83.49 0.96 -0.94 16 7 N -0.27 -10.39 3.37 -347.74 -1.17 -11.56 16 8 C 0.14 4.73 6.48 86.38 0.56 5.29 16 9 C -0.05 -2.16 1.23 -52.93 -0.07 -2.23 16 10 C -0.45 -25.45 7.14 25.60 0.18 -25.27 16 11 H 0.01 0.88 7.97 -2.91 -0.02 0.85 16 12 C 0.02 1.35 5.46 84.66 0.46 1.81 16 13 N -0.95 -62.40 13.96 21.45 0.30 -62.10 16 14 Si 0.94 44.24 24.88 68.60 1.71 45.95 16 15 H -0.27 -11.98 7.10 99.48 0.71 -11.27 16 16 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 17 H -0.22 -8.85 5.55 99.48 0.55 -8.30 16 18 C -0.16 -5.43 9.88 30.60 0.30 -5.12 16 19 C -0.18 -6.18 7.41 30.60 0.23 -5.96 16 20 N -0.08 -4.02 10.88 37.02 0.40 -3.62 16 21 N -0.31 -14.16 11.71 -48.60 -0.57 -14.73 16 22 C -0.22 -4.45 5.25 24.59 0.13 -4.32 16 23 C -0.13 -2.58 9.63 21.22 0.20 -2.38 16 24 C -0.15 -2.28 10.18 21.22 0.22 -2.06 16 25 C -0.21 -2.94 11.23 66.72 0.75 -2.19 16 26 S 0.12 1.86 21.94 -56.49 -1.24 0.62 16 27 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.31 7.07 -2.39 -0.02 1.29 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.38 9.75 9.04 -74.06 -0.67 9.08 16 31 H 0.11 1.97 7.27 -2.39 -0.02 1.95 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.23 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.09 2.93 6.83 -2.39 -0.02 2.91 16 35 H 0.14 3.03 7.87 -2.39 -0.02 3.01 16 36 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 37 H 0.12 2.96 8.08 -2.39 -0.02 2.94 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.07 2.82 6.78 -2.39 -0.02 2.81 16 40 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.14 2.80 7.91 -2.91 -0.02 2.77 16 42 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -82.55 364.70 2.77 -79.78 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.21 Total: 26.73 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 4.87 Total: -42.61 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -1.04 Total: -92.01 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.73 Total: -18.45 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.71 Total: 45.95 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.24 Total: 0.62 kcal Total: -82.55 2.77 -79.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849144664.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.904 kcal (2) G-P(sol) polarization free energy of solvation -82.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds