Wall clock time and date at job start Tue Mar 31 2020 18:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47268 * 2 1 4 4 N 1.46494 * 109.47423 * 239.99213 * 2 1 3 5 5 C 1.34776 * 119.99772 * 85.00243 * 4 2 1 6 6 S 1.71200 * 120.00238 * 359.97438 * 5 4 2 7 7 N 1.34784 * 120.00212 * 180.02562 * 5 4 2 8 8 N 1.40103 * 119.99633 * 359.97438 * 7 5 4 9 9 C 1.34774 * 119.99725 * 180.02562 * 8 7 5 10 10 O 1.21553 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.47884 * 119.99825 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02741 * 359.72467 * 11 9 8 13 13 C 1.38329 * 120.35651 * 179.71867 * 12 11 9 14 14 C 1.37751 * 120.41390 * 0.55553 * 13 12 11 15 15 C 1.40750 * 120.03820 * 359.72808 * 14 13 12 16 16 C 1.41440 * 120.17458 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00232 * 24.43040 * 16 15 14 18 18 C 1.39935 * 119.99476 * 204.43301 * 16 15 14 19 19 N 1.30823 * 120.00452 * 17.88208 * 18 16 15 20 20 Si 1.86803 * 119.99966 * 197.87679 * 18 16 15 21 21 H 1.48498 * 109.47237 * 59.99917 * 20 18 16 22 22 H 1.48491 * 109.47493 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47113 * 300.00404 * 20 18 16 24 24 C 1.38999 * 120.02483 * 179.97438 * 11 9 8 25 25 C 1.53008 * 109.46996 * 119.99345 * 2 1 3 26 26 C 1.52996 * 117.49821 * 8.62455 * 25 2 1 27 27 C 1.52995 * 117.49582 * 300.00160 * 25 2 1 28 28 H 1.09000 * 109.47215 * 300.00478 * 1 2 3 29 29 H 1.08999 * 109.47070 * 60.00701 * 1 2 3 30 30 H 1.08998 * 109.46809 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00494 * 264.99799 * 4 2 1 32 32 H 0.97002 * 119.99768 * 179.97438 * 7 5 4 33 33 H 0.96991 * 120.00063 * 359.97438 * 8 7 5 34 34 H 1.07994 * 119.81489 * 359.97438 * 12 11 9 35 35 H 1.07997 * 119.79005 * 180.28255 * 13 12 11 36 36 H 1.07999 * 119.97885 * 179.73904 * 14 13 12 37 37 H 0.97003 * 120.00046 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.20068 * 359.97438 * 24 11 9 39 39 H 1.08999 * 115.55904 * 154.31124 * 25 2 1 40 40 H 1.09005 * 117.49818 * 359.97438 * 26 25 2 41 41 H 1.09000 * 117.49665 * 145.01743 * 26 25 2 42 42 H 1.08997 * 117.49648 * 214.97388 * 27 25 2 43 43 H 1.08992 * 117.50327 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 16 1.7394 1.6424 -2.4343 7 7 2.5960 -0.6540 -3.4576 8 7 2.9292 -2.0134 -3.3945 9 6 3.3785 -2.6488 -4.4949 10 8 3.4942 -2.0426 -5.5421 11 6 3.7308 -4.0835 -4.4282 12 6 3.6033 -4.7804 -3.2216 13 6 3.9253 -6.1240 -3.1529 14 6 4.3859 -6.7886 -4.2681 15 6 4.5263 -6.1027 -5.4891 16 6 4.9985 -6.7824 -6.6361 17 1 4.8824 -7.8532 -6.7152 18 6 5.6160 -6.0674 -7.6683 19 7 6.0727 -4.8616 -7.4467 20 14 5.7886 -6.8345 -9.3628 21 1 4.4418 -7.1518 -9.9020 22 1 6.4736 -5.8801 -10.2709 23 1 6.5879 -8.0820 -9.2623 24 6 4.1937 -4.7395 -5.5628 25 6 2.0400 -0.7212 1.2494 26 6 1.0104 -1.4539 2.1118 27 6 1.6356 -0.1492 2.6096 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.2492 -1.6319 -1.1524 32 1 2.6883 -0.1702 -4.2933 33 1 2.8372 -2.4970 -2.5588 34 1 3.2476 -4.2676 -2.3403 35 1 3.8191 -6.6540 -2.2180 36 1 4.6393 -7.8366 -4.2055 37 1 6.5011 -4.3661 -8.1621 38 1 4.2971 -4.2047 -6.4954 39 1 3.0322 -1.1643 1.1645 40 1 -0.0304 -1.4219 1.7894 41 1 1.3253 -2.3792 2.5943 42 1 2.3618 -0.2162 3.4197 43 1 1.0067 0.7409 2.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855102016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:11 Heat of formation + Delta-G solvation = 61.240108 kcal Electronic energy + Delta-G solvation = -25287.229135 eV Core-core repulsion = 21653.495321 eV Total energy + Delta-G solvation = -3633.733814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.49149 -39.34587 -37.95176 -37.11180 -35.12169 -34.00641 -32.29852 -30.39525 -29.76099 -29.57145 -25.69718 -25.40080 -24.06678 -22.87554 -22.30915 -21.39867 -21.20153 -20.06563 -19.07289 -18.38977 -17.52197 -16.53995 -16.24047 -15.92752 -15.60812 -15.31638 -15.06841 -14.91135 -14.81094 -14.27211 -14.09144 -13.49758 -13.34623 -13.02291 -12.77291 -12.45596 -12.34402 -11.89415 -11.79725 -11.42949 -11.38005 -11.30289 -11.26361 -11.02889 -10.94884 -10.82301 -10.70332 -10.39210 -10.33576 -9.96711 -9.62096 -9.40687 -8.85975 -7.98795 -7.79169 -7.74740 -7.66399 -7.01239 -4.63391 1.17475 1.29124 1.83856 2.11680 2.46821 2.59660 2.95817 2.98105 3.01719 3.39628 3.43843 3.76746 4.16675 4.25035 4.38394 4.46927 4.56983 4.66656 4.97896 5.02432 5.09765 5.27099 5.34143 5.42106 5.47756 5.56756 5.66994 5.73182 5.73870 5.93440 5.96921 6.02914 6.16277 6.41465 6.57454 6.73149 6.74617 6.96770 7.08517 7.09858 7.22907 7.42732 7.55211 7.71497 7.91283 8.25188 8.33470 8.57199 8.58920 9.93227 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.002588 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.987156 B =10816.869243 C =12112.441205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.175 3.825 3 H 0.121 0.879 4 N -0.681 5.681 5 C 0.567 3.433 6 S -0.624 6.624 7 N -0.461 5.461 8 N -0.555 5.555 9 C 0.573 3.427 10 O -0.526 6.526 11 C -0.121 4.121 12 C -0.227 4.227 13 C -0.090 4.090 14 C -0.209 4.209 15 C 0.100 3.900 16 C -0.453 4.453 17 H 0.085 0.915 18 C 0.072 3.928 19 N -0.779 5.779 20 Si 0.913 3.087 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.263 1.263 24 C -0.085 4.085 25 C -0.175 4.175 26 C -0.182 4.182 27 C -0.162 4.162 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.058 0.942 31 H 0.394 0.606 32 H 0.458 0.542 33 H 0.419 0.581 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.288 0.712 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 3.509 15.077 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.071 3.929 3 H 0.139 0.861 4 N -0.313 5.313 5 C 0.204 3.796 6 S -0.500 6.500 7 N -0.188 5.188 8 N -0.308 5.308 9 C 0.364 3.636 10 O -0.400 6.400 11 C -0.126 4.126 12 C -0.247 4.247 13 C -0.108 4.108 14 C -0.229 4.229 15 C 0.097 3.903 16 C -0.482 4.482 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.403 5.403 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.105 4.105 25 C -0.194 4.194 26 C -0.219 4.219 27 C -0.200 4.200 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.231 0.769 32 H 0.308 0.692 33 H 0.262 0.738 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.155 0.845 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.927 5.070 14.230 16.619 hybrid contribution 0.599 -1.697 -0.516 1.872 sum -6.328 3.372 13.715 15.476 Atomic orbital electron populations 1.22300 0.94068 1.02309 1.03926 1.20901 0.94753 0.97899 0.79367 0.86150 1.45026 1.64960 1.13016 1.08335 1.22389 0.81928 0.94234 0.81027 1.93562 1.71934 0.92649 1.91821 1.44750 1.61516 1.00015 1.12530 1.45777 1.70727 0.98687 1.15639 1.19271 0.74991 0.88028 0.81288 1.90780 1.52653 1.67559 1.28975 1.19095 1.08041 0.88709 0.96780 1.20196 1.14022 0.95419 0.95069 1.20419 0.99320 0.93812 0.97250 1.21137 1.09442 0.99494 0.92793 1.17585 0.89261 0.91292 0.92126 1.19627 1.32472 0.95807 1.00246 0.89736 1.26015 0.92997 0.94600 1.01184 1.69749 1.24922 1.10857 1.34742 0.86263 0.79747 0.79788 0.80484 1.18549 1.20056 1.18791 1.21649 0.96749 0.95248 0.96866 1.22549 1.00188 1.05047 0.91596 1.23240 0.99056 0.96311 1.03295 1.22949 1.03561 0.97861 0.95630 0.90935 0.90421 0.92255 0.76861 0.69216 0.73788 0.89722 0.88550 0.88249 0.90036 0.84548 0.87163 0.87664 0.88632 0.88379 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 8.03 37.16 0.30 -1.07 16 2 C 0.17 1.52 2.73 -67.93 -0.19 1.33 16 3 H 0.12 1.27 6.82 -51.93 -0.35 0.92 16 4 N -0.68 -6.65 5.04 -55.52 -0.28 -6.93 16 5 C 0.57 7.40 7.94 -86.91 -0.69 6.71 16 6 S -0.62 -10.00 28.14 -107.50 -3.02 -13.02 16 7 N -0.46 -6.47 6.26 29.96 0.19 -6.28 16 8 N -0.56 -7.97 6.21 30.54 0.19 -7.79 16 9 C 0.57 11.01 7.89 -12.31 -0.10 10.91 16 10 O -0.53 -11.77 16.17 5.32 0.09 -11.68 16 11 C -0.12 -2.53 5.87 -105.04 -0.62 -3.14 16 12 C -0.23 -4.10 9.55 -38.92 -0.37 -4.47 16 13 C -0.09 -1.68 10.01 -39.73 -0.40 -2.08 16 14 C -0.21 -4.47 9.78 -38.81 -0.38 -4.85 16 15 C 0.10 2.42 5.57 -106.87 -0.60 1.83 16 16 C -0.45 -11.01 9.05 -37.73 -0.34 -11.35 16 17 H 0.08 1.94 7.91 -52.49 -0.42 1.52 16 18 C 0.07 1.70 5.14 -17.35 -0.09 1.62 16 19 N -0.78 -19.28 10.96 55.55 0.61 -18.67 16 20 Si 0.91 17.63 29.60 -169.99 -5.03 12.59 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 24 C -0.08 -2.06 8.24 -38.44 -0.32 -2.37 16 25 C -0.17 -1.19 5.87 -90.62 -0.53 -1.73 16 26 C -0.18 -1.06 9.57 -26.73 -0.26 -1.32 16 27 C -0.16 -0.95 9.90 -26.73 -0.26 -1.21 16 28 H 0.07 0.49 7.07 -51.93 -0.37 0.12 16 29 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 30 H 0.06 0.44 6.97 -51.93 -0.36 0.08 16 31 H 0.39 3.21 6.52 -40.82 -0.27 2.95 16 32 H 0.46 6.95 7.98 -182.59 -1.46 5.49 16 33 H 0.42 4.80 4.72 -182.60 -0.86 3.94 16 34 H 0.08 1.17 6.38 -52.49 -0.33 0.84 16 35 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 37 H 0.29 6.59 8.30 -40.82 -0.34 6.26 16 38 H 0.14 3.60 5.74 -52.49 -0.30 3.30 16 39 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.11 0.59 5.85 -51.93 -0.30 0.29 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.55 7.61 -51.93 -0.40 0.15 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -28.47 368.71 -13.60 -42.06 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -7.05 Total: 15.38 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -4.84 Total: -11.20 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.71 Total: -39.68 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.59 kcal Atomic # 16 Polarization: -10.00 SS G_CDS: -3.02 Total: -13.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.47 -13.60 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855102016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.304 kcal (2) G-P(sol) polarization free energy of solvation -28.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds