Wall clock time and date at job start Tue Mar 31 2020 18:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47268 * 2 1 4 4 N 1.46494 * 109.47423 * 239.99213 * 2 1 3 5 5 C 1.34776 * 119.99772 * 85.00243 * 4 2 1 6 6 S 1.71200 * 120.00238 * 359.97438 * 5 4 2 7 7 N 1.34784 * 120.00212 * 180.02562 * 5 4 2 8 8 N 1.40103 * 119.99633 * 359.97438 * 7 5 4 9 9 C 1.34774 * 119.99725 * 180.02562 * 8 7 5 10 10 O 1.21553 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.47884 * 119.99825 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02741 * 359.72467 * 11 9 8 13 13 C 1.38329 * 120.35651 * 179.71867 * 12 11 9 14 14 C 1.37751 * 120.41390 * 0.55553 * 13 12 11 15 15 C 1.40750 * 120.03820 * 359.72808 * 14 13 12 16 16 C 1.41440 * 120.17458 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00232 * 24.43040 * 16 15 14 18 18 C 1.39935 * 119.99476 * 204.43301 * 16 15 14 19 19 N 1.30823 * 120.00452 * 17.88208 * 18 16 15 20 20 Si 1.86803 * 119.99966 * 197.87679 * 18 16 15 21 21 H 1.48498 * 109.47237 * 59.99917 * 20 18 16 22 22 H 1.48491 * 109.47493 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47113 * 300.00404 * 20 18 16 24 24 C 1.38999 * 120.02483 * 179.97438 * 11 9 8 25 25 C 1.53008 * 109.46996 * 119.99345 * 2 1 3 26 26 C 1.52996 * 117.49821 * 8.62455 * 25 2 1 27 27 C 1.52995 * 117.49582 * 300.00160 * 25 2 1 28 28 H 1.09000 * 109.47215 * 300.00478 * 1 2 3 29 29 H 1.08999 * 109.47070 * 60.00701 * 1 2 3 30 30 H 1.08998 * 109.46809 * 180.02562 * 1 2 3 31 31 H 0.97000 * 120.00494 * 264.99799 * 4 2 1 32 32 H 0.97002 * 119.99768 * 179.97438 * 7 5 4 33 33 H 0.96991 * 120.00063 * 359.97438 * 8 7 5 34 34 H 1.07994 * 119.81489 * 359.97438 * 12 11 9 35 35 H 1.07997 * 119.79005 * 180.28255 * 13 12 11 36 36 H 1.07999 * 119.97885 * 179.73904 * 14 13 12 37 37 H 0.97003 * 120.00046 * 179.97438 * 19 18 16 38 38 H 1.08002 * 120.20068 * 359.97438 * 24 11 9 39 39 H 1.08999 * 115.55904 * 154.31124 * 25 2 1 40 40 H 1.09005 * 117.49818 * 359.97438 * 26 25 2 41 41 H 1.09000 * 117.49665 * 145.01743 * 26 25 2 42 42 H 1.08997 * 117.49648 * 214.97388 * 27 25 2 43 43 H 1.08992 * 117.50327 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1472 -0.0185 -2.3570 6 16 1.7394 1.6424 -2.4343 7 7 2.5960 -0.6540 -3.4576 8 7 2.9292 -2.0134 -3.3945 9 6 3.3785 -2.6488 -4.4949 10 8 3.4942 -2.0426 -5.5421 11 6 3.7308 -4.0835 -4.4282 12 6 3.6033 -4.7804 -3.2216 13 6 3.9253 -6.1240 -3.1529 14 6 4.3859 -6.7886 -4.2681 15 6 4.5263 -6.1027 -5.4891 16 6 4.9985 -6.7824 -6.6361 17 1 4.8824 -7.8532 -6.7152 18 6 5.6160 -6.0674 -7.6683 19 7 6.0727 -4.8616 -7.4467 20 14 5.7886 -6.8345 -9.3628 21 1 4.4418 -7.1518 -9.9020 22 1 6.4736 -5.8801 -10.2709 23 1 6.5879 -8.0820 -9.2623 24 6 4.1937 -4.7395 -5.5628 25 6 2.0400 -0.7212 1.2494 26 6 1.0104 -1.4539 2.1118 27 6 1.6356 -0.1492 2.6096 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.2492 -1.6319 -1.1524 32 1 2.6883 -0.1702 -4.2933 33 1 2.8372 -2.4970 -2.5588 34 1 3.2476 -4.2676 -2.3403 35 1 3.8191 -6.6540 -2.2180 36 1 4.6393 -7.8366 -4.2055 37 1 6.5011 -4.3661 -8.1621 38 1 4.2971 -4.2047 -6.4954 39 1 3.0322 -1.1643 1.1645 40 1 -0.0304 -1.4219 1.7894 41 1 1.3253 -2.3792 2.5943 42 1 2.3618 -0.2162 3.4197 43 1 1.0067 0.7409 2.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855102016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:10 Heat of formation + Delta-G solvation = 45.975520 kcal Electronic energy + Delta-G solvation = -25287.891057 eV Core-core repulsion = 21653.495321 eV Total energy + Delta-G solvation = -3634.395736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78632 -40.39133 -39.17575 -38.47045 -36.15734 -35.66251 -33.63017 -31.76244 -31.34728 -30.60425 -27.31045 -26.31010 -25.32745 -23.77880 -23.11532 -22.85860 -22.52090 -21.18477 -20.13852 -19.82574 -18.81158 -17.73136 -17.49439 -17.05930 -16.83174 -16.75914 -16.42825 -16.03457 -15.85718 -15.57171 -15.15523 -15.00122 -14.63766 -14.34738 -14.19741 -13.55172 -13.16578 -13.00999 -12.98629 -12.84619 -12.62047 -12.57484 -12.32889 -12.26059 -12.06835 -11.95354 -11.90119 -11.58636 -11.31320 -11.22295 -11.10400 -10.97460 -9.99841 -9.59001 -9.45336 -9.04306 -8.92898 -8.71470 -6.42181 -0.02391 0.02866 0.30092 0.96073 0.96635 1.36441 1.45695 1.49186 1.49390 1.85722 2.16622 2.70300 2.88034 3.03436 3.58072 3.62808 3.65149 3.91905 4.08091 4.13669 4.30776 4.32768 4.43522 4.48376 4.69328 4.71970 4.81139 4.87101 4.94076 5.01477 5.05163 5.10380 5.13651 5.24266 5.28064 5.32375 5.38933 5.43078 5.55737 5.77287 5.84905 5.89517 6.00581 6.11462 6.25830 6.53445 6.83119 6.87970 6.90190 8.24667 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.002588 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.987156 B =10816.869243 C =12112.441205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.102 0.898 4 N -0.658 5.658 5 C 0.584 3.416 6 S -0.677 6.677 7 N -0.466 5.466 8 N -0.528 5.528 9 C 0.575 3.425 10 O -0.565 6.565 11 C -0.129 4.129 12 C -0.197 4.197 13 C -0.090 4.090 14 C -0.211 4.211 15 C 0.069 3.931 16 C -0.494 4.494 17 H 0.086 0.914 18 C 0.032 3.968 19 N -0.822 5.822 20 Si 0.978 3.022 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.253 1.253 24 C -0.125 4.125 25 C -0.181 4.181 26 C -0.174 4.174 27 C -0.162 4.162 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.408 0.592 32 H 0.453 0.547 33 H 0.436 0.564 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.287 0.713 38 H 0.102 0.898 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 2.291 18.547 20.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.119 0.881 4 N -0.289 5.289 5 C 0.219 3.781 6 S -0.553 6.553 7 N -0.192 5.192 8 N -0.281 5.281 9 C 0.366 3.634 10 O -0.442 6.442 11 C -0.134 4.134 12 C -0.217 4.217 13 C -0.107 4.107 14 C -0.230 4.230 15 C 0.066 3.934 16 C -0.523 4.523 17 H 0.104 0.896 18 C -0.184 4.184 19 N -0.447 5.447 20 Si 0.799 3.201 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.177 1.177 24 C -0.145 4.145 25 C -0.200 4.200 26 C -0.210 4.210 27 C -0.199 4.199 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.302 0.698 33 H 0.282 0.718 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.943 3.822 17.809 19.871 hybrid contribution 0.783 -1.279 -1.250 1.952 sum -7.160 2.543 16.558 18.218 Atomic orbital electron populations 1.22256 0.93392 1.02947 1.03497 1.20988 0.95196 0.97224 0.79547 0.88051 1.45121 1.62820 1.13505 1.07467 1.21991 0.81390 0.93173 0.81499 1.93715 1.73910 0.95326 1.92361 1.44709 1.62255 0.99515 1.12755 1.45214 1.69069 0.98883 1.14977 1.19002 0.75037 0.87680 0.81680 1.90770 1.54357 1.68194 1.30857 1.19302 1.07405 0.89654 0.96991 1.20814 1.10113 0.95354 0.95389 1.20935 0.97597 0.94150 0.98066 1.21467 1.08600 1.00189 0.92791 1.17907 0.90197 0.91771 0.93496 1.19870 1.34499 0.96089 1.01819 0.89596 1.26797 0.92286 0.94853 1.04436 1.69845 1.26861 1.12440 1.35597 0.85290 0.79608 0.79121 0.76057 1.18502 1.19886 1.17667 1.21443 1.00139 0.95829 0.97127 1.22449 1.00722 1.05917 0.90890 1.23306 0.98860 0.96571 1.02284 1.23051 1.03685 0.98177 0.95011 0.89345 0.92950 0.90982 0.75295 0.69812 0.71778 0.84178 0.83841 0.87176 0.90191 0.88028 0.86747 0.87291 0.87730 0.87592 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.03 71.98 0.58 -1.69 16 2 C 0.17 2.58 2.73 45.00 0.12 2.71 16 3 H 0.10 2.00 6.82 -2.39 -0.02 1.98 16 4 N -0.66 -10.94 5.04 -329.57 -1.66 -12.60 16 5 C 0.58 14.31 7.94 179.05 1.42 15.73 16 6 S -0.68 -21.60 28.14 -56.49 -1.59 -23.19 16 7 N -0.47 -12.42 6.26 -59.11 -0.37 -12.79 16 8 N -0.53 -13.84 6.21 -175.58 -1.09 -14.93 16 9 C 0.58 21.67 7.89 86.80 0.68 22.36 16 10 O -0.56 -26.01 16.17 -3.88 -0.06 -26.07 16 11 C -0.13 -5.23 5.87 -20.13 -0.12 -5.34 16 12 C -0.20 -6.26 9.55 22.70 0.22 -6.04 16 13 C -0.09 -2.97 10.01 22.18 0.22 -2.74 16 14 C -0.21 -8.71 9.78 22.77 0.22 -8.49 16 15 C 0.07 3.41 5.57 -21.32 -0.12 3.29 16 16 C -0.49 -25.06 9.05 23.47 0.21 -24.85 16 17 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 18 C 0.03 1.57 5.14 85.25 0.44 2.01 16 19 N -0.82 -43.35 10.96 21.82 0.24 -43.11 16 20 Si 0.98 37.67 29.60 68.60 2.03 39.70 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 24 C -0.12 -6.25 8.24 23.01 0.19 -6.07 16 25 C -0.18 -1.85 5.87 -10.79 -0.06 -1.91 16 26 C -0.17 -1.33 9.57 30.59 0.29 -1.04 16 27 C -0.16 -1.37 9.90 30.59 0.30 -1.07 16 28 H 0.09 0.96 7.07 -2.39 -0.02 0.94 16 29 H 0.05 1.03 7.48 -2.39 -0.02 1.01 16 30 H 0.07 0.83 6.97 -2.39 -0.02 0.81 16 31 H 0.41 4.82 6.52 -92.71 -0.60 4.21 16 32 H 0.45 13.68 7.98 -213.32 -1.70 11.98 16 33 H 0.44 7.98 4.72 -213.33 -1.01 6.98 16 34 H 0.14 2.86 6.38 -2.91 -0.02 2.84 16 35 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 36 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 38 H 0.10 5.77 5.74 -2.91 -0.02 5.76 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 0.78 5.85 -2.38 -0.01 0.76 16 41 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.10 0.84 7.61 -2.39 -0.02 0.82 16 Total: -1.00 -67.60 368.71 -0.12 -67.72 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -2.22 Total: 38.41 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 4.60 Total: -13.14 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.88 Total: -83.44 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.06 Total: -26.07 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Atomic # 16 Polarization: -21.60 SS G_CDS: -1.59 Total: -23.19 kcal Total: -67.60 -0.12 -67.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855102016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.700 kcal (2) G-P(sol) polarization free energy of solvation -67.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds