Wall clock time and date at job start Tue Mar 31 2020 18:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47624 * 2 1 4 4 N 1.46501 * 109.46697 * 119.99832 * 2 1 3 5 5 C 1.34771 * 120.00089 * 274.99638 * 4 2 1 6 6 S 1.71203 * 119.99925 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00289 * 179.97438 * 5 4 2 8 8 N 1.40103 * 119.99921 * 0.02562 * 7 5 4 9 9 C 1.34771 * 119.99917 * 179.97438 * 8 7 5 10 10 O 1.21551 * 120.00219 * 0.02562 * 9 8 7 11 11 C 1.47890 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02467 * 359.97438 * 11 9 8 13 13 C 1.38325 * 120.35891 * 180.02562 * 12 11 9 14 14 C 1.37746 * 120.41487 * 359.97438 * 13 12 11 15 15 C 1.40748 * 120.03636 * 0.04443 * 14 13 12 16 16 C 1.41440 * 120.17756 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99720 * 24.37140 * 16 15 14 18 18 C 1.39937 * 120.00148 * 204.36580 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.85017 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.84477 * 18 16 15 21 21 H 1.48503 * 109.46837 * 90.00406 * 20 18 16 22 22 H 1.48497 * 109.47376 * 210.00134 * 20 18 16 23 23 H 1.48500 * 109.46917 * 330.00618 * 20 18 16 24 24 C 1.38995 * 120.02459 * 180.02562 * 11 9 8 25 25 C 1.53005 * 109.47301 * 239.99553 * 2 1 3 26 26 C 1.52995 * 117.50030 * 128.62468 * 25 2 1 27 27 C 1.52992 * 60.00123 * 252.51031 * 26 25 2 28 28 H 1.08997 * 109.47355 * 300.00658 * 1 2 3 29 29 H 1.09002 * 109.46402 * 60.00433 * 1 2 3 30 30 H 1.08999 * 109.47380 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00337 * 95.00043 * 4 2 1 32 32 H 0.97004 * 120.00016 * 179.97438 * 7 5 4 33 33 H 0.97004 * 119.99944 * 359.97438 * 8 7 5 34 34 H 1.08009 * 119.81903 * 0.02562 * 12 11 9 35 35 H 1.08002 * 119.79301 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.98415 * 179.97438 * 14 13 12 37 37 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.20287 * 359.70146 * 24 11 9 39 39 H 1.09002 * 115.54946 * 274.33386 * 25 2 1 40 40 H 1.09005 * 117.49747 * 0.02562 * 26 25 2 41 41 H 1.08998 * 117.50205 * 145.01985 * 26 25 2 42 42 H 1.08997 * 117.50391 * 252.50748 * 27 26 25 43 43 H 1.09007 * 117.49966 * 107.48591 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3571 6 16 1.7393 1.6428 2.4341 7 7 2.5956 -0.6537 3.4578 8 7 2.9287 -2.0131 3.3950 9 6 3.3779 -2.6483 4.4955 10 8 3.4935 -2.0420 5.5426 11 6 3.7289 -4.0834 4.4293 12 6 3.5945 -4.7823 3.2246 13 6 3.9203 -6.1248 3.1551 14 6 4.3813 -6.7892 4.2702 15 6 4.5227 -6.1030 5.4909 16 6 4.9953 -6.7824 6.6379 17 1 5.6047 -7.6672 6.5285 18 6 4.6733 -6.3079 7.9144 19 7 3.6774 -5.4739 8.0704 20 14 5.6653 -6.8656 9.3958 21 1 6.8029 -5.9351 9.6084 22 1 4.7968 -6.8688 10.6004 23 1 6.1847 -8.2360 9.1563 24 6 4.1917 -4.7393 5.5641 25 6 2.0400 -0.7214 -1.2492 26 6 3.0742 0.0049 -2.1116 27 6 1.6359 -0.1497 -2.6096 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2489 -1.6318 1.1528 32 1 2.6886 -0.1696 4.2933 33 1 2.8361 -2.4970 2.5594 34 1 3.2343 -4.2707 2.3442 35 1 3.8134 -6.6553 2.2204 36 1 4.6333 -7.8376 4.2082 37 1 3.4545 -5.1448 8.9551 38 1 4.3008 -4.2028 6.4951 39 1 2.1267 -1.8046 -1.1641 40 1 3.3916 0.9965 -1.7888 41 1 3.8416 -0.6004 -2.5940 42 1 1.4569 -0.8567 -3.4196 43 1 1.0065 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855102019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:15 Heat of formation + Delta-G solvation = 57.847366 kcal Electronic energy + Delta-G solvation = -25247.535604 eV Core-core repulsion = 21613.654670 eV Total energy + Delta-G solvation = -3633.880935 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47108 -39.22856 -37.86892 -37.09308 -35.18043 -34.00987 -32.35822 -30.53931 -29.79263 -29.61685 -25.63884 -25.12533 -23.92812 -22.68555 -22.33498 -21.60988 -21.21423 -20.32307 -19.07285 -18.46534 -17.57799 -16.57472 -16.19166 -15.89088 -15.43936 -15.30601 -14.91443 -14.67899 -14.61499 -14.39663 -14.25577 -13.49750 -13.37696 -13.02849 -12.77764 -12.70754 -12.37691 -11.88620 -11.78809 -11.43922 -11.37968 -11.28406 -11.22984 -11.02824 -10.96099 -10.80345 -10.70045 -10.37532 -10.35297 -9.95949 -9.61951 -9.42039 -8.85237 -7.98991 -7.79410 -7.74732 -7.66851 -7.01432 -4.63561 1.17710 1.29164 1.83711 2.11685 2.47297 2.58929 2.96060 2.99969 3.00128 3.38546 3.43848 3.76719 4.13357 4.25164 4.38195 4.48868 4.56982 4.74723 5.01692 5.04939 5.08886 5.26417 5.33966 5.35957 5.51728 5.59052 5.66841 5.73846 5.74680 5.93780 5.97134 6.05456 6.16986 6.41308 6.57295 6.72955 6.74437 6.96655 7.08325 7.09694 7.22859 7.42490 7.55085 7.71532 7.91110 8.25364 8.33457 8.57028 8.58898 9.93053 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.002561 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.763781 B =10932.202760 C =12096.641196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.174 3.826 3 H 0.118 0.882 4 N -0.680 5.680 5 C 0.568 3.432 6 S -0.625 6.625 7 N -0.461 5.461 8 N -0.555 5.555 9 C 0.573 3.427 10 O -0.526 6.526 11 C -0.121 4.121 12 C -0.227 4.227 13 C -0.090 4.090 14 C -0.209 4.209 15 C 0.100 3.900 16 C -0.453 4.453 17 H 0.085 0.915 18 C 0.072 3.928 19 N -0.779 5.779 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.084 4.084 25 C -0.173 4.173 26 C -0.175 4.175 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.393 0.607 32 H 0.458 0.542 33 H 0.419 0.581 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.288 0.712 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.108 4.728 -15.968 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.136 0.864 4 N -0.313 5.313 5 C 0.205 3.795 6 S -0.501 6.501 7 N -0.188 5.188 8 N -0.308 5.308 9 C 0.364 3.636 10 O -0.400 6.400 11 C -0.126 4.126 12 C -0.247 4.247 13 C -0.108 4.108 14 C -0.229 4.229 15 C 0.097 3.903 16 C -0.481 4.481 17 H 0.103 0.897 18 C -0.148 4.148 19 N -0.403 5.403 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.105 4.105 25 C -0.192 4.192 26 C -0.212 4.212 27 C -0.200 4.200 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.231 0.769 32 H 0.308 0.692 33 H 0.262 0.738 34 H 0.103 0.897 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.155 0.845 39 H 0.126 0.874 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.417 6.207 -15.048 16.632 hybrid contribution 0.596 -1.716 0.512 1.888 sum -2.821 4.490 -14.536 15.473 Atomic orbital electron populations 1.22152 0.93689 1.02358 1.03853 1.20985 0.94948 0.97710 0.79331 0.86435 1.45025 1.64943 1.12966 1.08340 1.22372 0.81908 0.94238 0.81004 1.93556 1.71964 0.92660 1.91871 1.44745 1.61562 0.99972 1.12533 1.45775 1.70715 0.98705 1.15622 1.19270 0.75100 0.87964 0.81246 1.90779 1.52781 1.67542 1.28856 1.19097 1.08320 0.88647 0.96561 1.20195 1.13899 0.95685 0.94931 1.20417 0.99412 0.93797 0.97179 1.21133 1.09050 0.98515 0.94157 1.17596 0.89340 0.90850 0.92517 1.19668 1.27947 1.10778 0.89715 0.89691 1.26021 0.93828 0.93682 1.01293 1.69757 1.20643 1.23650 1.26201 0.86209 0.80277 0.80294 0.79487 1.18968 1.20044 1.18417 1.21649 0.98246 0.94211 0.96370 1.22468 1.05614 0.99477 0.91668 1.23102 0.92602 1.02292 1.03159 1.22944 0.98272 1.03252 0.95560 0.90519 0.90927 0.92613 0.76936 0.69214 0.73806 0.89742 0.88555 0.88244 0.90093 0.84547 0.87386 0.88184 0.88528 0.88345 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.27 37.16 0.34 -1.03 16 2 C 0.17 1.52 2.57 -67.93 -0.17 1.35 16 3 H 0.12 1.23 6.57 -51.93 -0.34 0.89 16 4 N -0.68 -6.68 5.04 -55.52 -0.28 -6.96 16 5 C 0.57 7.43 7.94 -86.92 -0.69 6.74 16 6 S -0.62 -10.02 28.14 -107.50 -3.02 -13.04 16 7 N -0.46 -6.49 6.26 29.96 0.19 -6.30 16 8 N -0.56 -7.98 6.21 30.54 0.19 -7.79 16 9 C 0.57 11.01 7.89 -12.31 -0.10 10.92 16 10 O -0.53 -11.78 16.17 5.32 0.09 -11.69 16 11 C -0.12 -2.53 5.87 -105.04 -0.62 -3.14 16 12 C -0.23 -4.10 9.55 -38.92 -0.37 -4.47 16 13 C -0.09 -1.68 10.01 -39.73 -0.40 -2.08 16 14 C -0.21 -4.46 9.78 -38.81 -0.38 -4.84 16 15 C 0.10 2.41 5.57 -106.87 -0.60 1.82 16 16 C -0.45 -11.00 9.05 -37.73 -0.34 -11.34 16 17 H 0.09 1.96 7.91 -52.49 -0.41 1.54 16 18 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 19 N -0.78 -19.27 10.95 55.55 0.61 -18.67 16 20 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 21 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 24 C -0.08 -2.05 8.23 -38.44 -0.32 -2.36 16 25 C -0.17 -1.17 5.35 -90.62 -0.48 -1.66 16 26 C -0.17 -1.15 10.18 -26.74 -0.27 -1.42 16 27 C -0.16 -0.94 9.73 -26.74 -0.26 -1.20 16 28 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 29 H 0.07 0.51 7.29 -51.93 -0.38 0.13 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.39 3.19 6.47 -40.82 -0.26 2.93 16 32 H 0.46 6.96 7.98 -182.59 -1.46 5.50 16 33 H 0.42 4.80 4.72 -182.59 -0.86 3.94 16 34 H 0.08 1.17 6.38 -52.48 -0.33 0.83 16 35 H 0.10 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.10 1.98 8.06 -52.49 -0.42 1.55 16 37 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 38 H 0.14 3.60 5.74 -52.49 -0.30 3.30 16 39 H 0.11 0.66 8.07 -51.93 -0.42 0.24 16 40 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.54 7.61 -51.92 -0.40 0.15 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -28.54 372.91 -13.61 -42.15 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: -7.22 Total: 15.20 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.74 Total: -11.12 kcal Atomic # 7 Polarization: -40.43 SS G_CDS: 0.71 Total: -39.72 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: -10.02 SS G_CDS: -3.02 Total: -13.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.54 -13.61 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855102019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.998 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds