Wall clock time and date at job start Tue Mar 31 2020 18:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47624 * 2 1 4 4 N 1.46501 * 109.46697 * 119.99832 * 2 1 3 5 5 C 1.34771 * 120.00089 * 274.99638 * 4 2 1 6 6 S 1.71203 * 119.99925 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00289 * 179.97438 * 5 4 2 8 8 N 1.40103 * 119.99921 * 0.02562 * 7 5 4 9 9 C 1.34771 * 119.99917 * 179.97438 * 8 7 5 10 10 O 1.21551 * 120.00219 * 0.02562 * 9 8 7 11 11 C 1.47890 * 119.99974 * 179.97438 * 9 8 7 12 12 C 1.39921 * 120.02467 * 359.97438 * 11 9 8 13 13 C 1.38325 * 120.35891 * 180.02562 * 12 11 9 14 14 C 1.37746 * 120.41487 * 359.97438 * 13 12 11 15 15 C 1.40748 * 120.03636 * 0.04443 * 14 13 12 16 16 C 1.41440 * 120.17756 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99720 * 24.37140 * 16 15 14 18 18 C 1.39937 * 120.00148 * 204.36580 * 16 15 14 19 19 N 1.30828 * 120.00202 * 17.85017 * 18 16 15 20 20 Si 1.86804 * 120.00094 * 197.84477 * 18 16 15 21 21 H 1.48503 * 109.46837 * 90.00406 * 20 18 16 22 22 H 1.48497 * 109.47376 * 210.00134 * 20 18 16 23 23 H 1.48500 * 109.46917 * 330.00618 * 20 18 16 24 24 C 1.38995 * 120.02459 * 180.02562 * 11 9 8 25 25 C 1.53005 * 109.47301 * 239.99553 * 2 1 3 26 26 C 1.52995 * 117.50030 * 128.62468 * 25 2 1 27 27 C 1.52992 * 60.00123 * 252.51031 * 26 25 2 28 28 H 1.08997 * 109.47355 * 300.00658 * 1 2 3 29 29 H 1.09002 * 109.46402 * 60.00433 * 1 2 3 30 30 H 1.08999 * 109.47380 * 179.97438 * 1 2 3 31 31 H 0.97003 * 120.00337 * 95.00043 * 4 2 1 32 32 H 0.97004 * 120.00016 * 179.97438 * 7 5 4 33 33 H 0.97004 * 119.99944 * 359.97438 * 8 7 5 34 34 H 1.08009 * 119.81903 * 0.02562 * 12 11 9 35 35 H 1.08002 * 119.79301 * 180.02562 * 13 12 11 36 36 H 1.08002 * 119.98415 * 179.97438 * 14 13 12 37 37 H 0.96991 * 120.00411 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.20287 * 359.70146 * 24 11 9 39 39 H 1.09002 * 115.54946 * 274.33386 * 25 2 1 40 40 H 1.09005 * 117.49747 * 0.02562 * 26 25 2 41 41 H 1.08998 * 117.50205 * 145.01985 * 26 25 2 42 42 H 1.08997 * 117.50391 * 252.50748 * 27 26 25 43 43 H 1.09007 * 117.49966 * 107.48591 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1469 -0.0182 2.3571 6 16 1.7393 1.6428 2.4341 7 7 2.5956 -0.6537 3.4578 8 7 2.9287 -2.0131 3.3950 9 6 3.3779 -2.6483 4.4955 10 8 3.4935 -2.0420 5.5426 11 6 3.7289 -4.0834 4.4293 12 6 3.5945 -4.7823 3.2246 13 6 3.9203 -6.1248 3.1551 14 6 4.3813 -6.7892 4.2702 15 6 4.5227 -6.1030 5.4909 16 6 4.9953 -6.7824 6.6379 17 1 5.6047 -7.6672 6.5285 18 6 4.6733 -6.3079 7.9144 19 7 3.6774 -5.4739 8.0704 20 14 5.6653 -6.8656 9.3958 21 1 6.8029 -5.9351 9.6084 22 1 4.7968 -6.8688 10.6004 23 1 6.1847 -8.2360 9.1563 24 6 4.1917 -4.7393 5.5641 25 6 2.0400 -0.7214 -1.2492 26 6 3.0742 0.0049 -2.1116 27 6 1.6359 -0.1497 -2.6096 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 2.2489 -1.6318 1.1528 32 1 2.6886 -0.1696 4.2933 33 1 2.8361 -2.4970 2.5594 34 1 3.2343 -4.2707 2.3442 35 1 3.8134 -6.6553 2.2204 36 1 4.6333 -7.8376 4.2082 37 1 3.4545 -5.1448 8.9551 38 1 4.3008 -4.2028 6.4951 39 1 2.1267 -1.8046 -1.1641 40 1 3.3916 0.9965 -1.7888 41 1 3.8416 -0.6004 -2.5940 42 1 1.4569 -0.8567 -3.4196 43 1 1.0065 0.7403 -2.6146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855102019.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:14 Heat of formation + Delta-G solvation = 42.600332 kcal Electronic energy + Delta-G solvation = -25248.196765 eV Core-core repulsion = 21613.654670 eV Total energy + Delta-G solvation = -3634.542096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78115 -40.31960 -39.11273 -38.38724 -36.19522 -35.66785 -33.68092 -31.83753 -31.35928 -30.78456 -27.30877 -26.09046 -25.14507 -23.58195 -23.13645 -22.88431 -22.58594 -21.47686 -20.18565 -19.87762 -18.90757 -17.75735 -17.53852 -17.03306 -16.84015 -16.70278 -16.44299 -15.85141 -15.55822 -15.29169 -15.26489 -15.14067 -14.64392 -14.35036 -14.26012 -13.57153 -13.44550 -13.04195 -12.99591 -12.86121 -12.62621 -12.56697 -12.27363 -12.24572 -12.05532 -12.04589 -11.85874 -11.57287 -11.32477 -11.21932 -11.12403 -10.99695 -9.99156 -9.59099 -9.45450 -9.04317 -8.93837 -8.71608 -6.42291 -0.02394 0.02835 0.30055 0.95581 0.96477 1.36514 1.45247 1.49384 1.49744 1.85757 2.16523 2.70100 2.85496 3.03122 3.53784 3.62754 3.65113 3.95722 4.08838 4.16136 4.31675 4.35777 4.43633 4.48263 4.61750 4.71672 4.83137 4.85878 4.92907 5.01698 5.04897 5.09764 5.10542 5.24708 5.29814 5.33778 5.36336 5.43089 5.56063 5.77266 5.84812 5.89208 6.00602 6.11320 6.25766 6.53571 6.83161 6.87868 6.90217 8.24703 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.002561 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.763781 B =10932.202760 C =12096.641196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.100 0.900 4 N -0.657 5.657 5 C 0.585 3.415 6 S -0.678 6.678 7 N -0.466 5.466 8 N -0.528 5.528 9 C 0.575 3.425 10 O -0.565 6.565 11 C -0.129 4.129 12 C -0.197 4.197 13 C -0.090 4.090 14 C -0.210 4.210 15 C 0.068 3.932 16 C -0.493 4.493 17 H 0.086 0.914 18 C 0.031 3.969 19 N -0.822 5.822 20 Si 0.979 3.021 21 H -0.267 1.267 22 H -0.271 1.271 23 H -0.250 1.250 24 C -0.124 4.124 25 C -0.174 4.174 26 C -0.183 4.183 27 C -0.153 4.153 28 H 0.050 0.950 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.407 0.593 32 H 0.453 0.547 33 H 0.436 0.564 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.287 0.713 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.495 3.583 -19.643 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.069 3.931 3 H 0.117 0.883 4 N -0.289 5.289 5 C 0.220 3.780 6 S -0.554 6.554 7 N -0.192 5.192 8 N -0.281 5.281 9 C 0.366 3.634 10 O -0.442 6.442 11 C -0.134 4.134 12 C -0.217 4.217 13 C -0.108 4.108 14 C -0.230 4.230 15 C 0.066 3.934 16 C -0.522 4.522 17 H 0.104 0.896 18 C -0.184 4.184 19 N -0.447 5.447 20 Si 0.800 3.200 21 H -0.192 1.192 22 H -0.196 1.196 23 H -0.174 1.174 24 C -0.145 4.145 25 C -0.193 4.193 26 C -0.220 4.220 27 C -0.190 4.190 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.247 0.753 32 H 0.302 0.698 33 H 0.282 0.718 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.821 5.033 -18.831 19.863 hybrid contribution 0.642 -1.299 1.305 1.950 sum -3.178 3.735 -17.527 18.200 Atomic orbital electron populations 1.22106 0.93176 1.02901 1.03405 1.21084 0.95256 0.97124 0.79592 0.88257 1.45117 1.62804 1.13491 1.07466 1.21974 0.81380 0.93182 0.81487 1.93711 1.73931 0.95347 1.92407 1.44703 1.62298 0.99480 1.12751 1.45211 1.69058 0.98889 1.14968 1.19003 0.75144 0.87629 0.81626 1.90770 1.54490 1.68183 1.30740 1.19303 1.07648 0.89632 0.96777 1.20819 1.09979 0.95582 0.95272 1.20935 0.97648 0.94153 0.98018 1.21464 1.08198 0.99263 0.94101 1.17916 0.90413 0.91213 0.93869 1.19897 1.29729 1.11770 0.90792 0.89629 1.26798 0.94299 0.93555 1.03751 1.69850 1.22550 1.25785 1.26554 0.85236 0.78576 0.80028 0.76185 1.19184 1.19617 1.17367 1.21440 1.01723 0.94677 0.96660 1.22429 1.06012 1.00005 0.90833 1.23141 0.93371 1.01960 1.03481 1.23040 0.97443 1.03434 0.95087 0.93102 0.89334 0.91472 0.75302 0.69815 0.71775 0.84141 0.83826 0.87183 0.90203 0.88046 0.85751 0.89252 0.87707 0.86865 0.87999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.27 71.98 0.67 -1.62 16 2 C 0.17 2.57 2.57 44.99 0.12 2.69 16 3 H 0.10 1.95 6.57 -2.39 -0.02 1.93 16 4 N -0.66 -10.91 5.04 -329.57 -1.66 -12.57 16 5 C 0.58 14.34 7.94 179.05 1.42 15.76 16 6 S -0.68 -21.65 28.14 -56.49 -1.59 -23.24 16 7 N -0.47 -12.43 6.26 -59.11 -0.37 -12.80 16 8 N -0.53 -13.81 6.21 -175.58 -1.09 -14.90 16 9 C 0.58 21.65 7.89 86.80 0.68 22.33 16 10 O -0.56 -26.01 16.17 -3.88 -0.06 -26.08 16 11 C -0.13 -5.22 5.87 -20.13 -0.12 -5.34 16 12 C -0.20 -6.23 9.55 22.70 0.22 -6.01 16 13 C -0.09 -2.96 10.01 22.17 0.22 -2.74 16 14 C -0.21 -8.69 9.78 22.77 0.22 -8.47 16 15 C 0.07 3.38 5.57 -21.32 -0.12 3.26 16 16 C -0.49 -25.01 9.05 23.47 0.21 -24.80 16 17 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 18 C 0.03 1.56 5.14 85.25 0.44 1.99 16 19 N -0.82 -43.33 10.95 21.82 0.24 -43.09 16 20 Si 0.98 37.71 29.60 68.60 2.03 39.74 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.25 -9.09 7.11 99.48 0.71 -8.38 16 24 C -0.12 -6.23 8.23 23.01 0.19 -6.04 16 25 C -0.17 -1.71 5.35 -10.80 -0.06 -1.77 16 26 C -0.18 -1.89 10.18 30.59 0.31 -1.57 16 27 C -0.15 -1.23 9.73 30.59 0.30 -0.93 16 28 H 0.05 1.03 7.48 -2.39 -0.02 1.01 16 29 H 0.09 1.01 7.29 -2.39 -0.02 0.99 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.41 4.68 6.47 -92.71 -0.60 4.08 16 32 H 0.45 13.70 7.98 -213.31 -1.70 11.99 16 33 H 0.44 7.91 4.72 -213.31 -1.01 6.91 16 34 H 0.14 2.83 6.38 -2.91 -0.02 2.81 16 35 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.11 4.21 8.06 -2.91 -0.02 4.18 16 37 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 38 H 0.10 5.76 5.74 -2.91 -0.02 5.75 16 39 H 0.12 0.87 8.07 -2.39 -0.02 0.85 16 40 H 0.09 1.12 8.05 -2.38 -0.02 1.10 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.10 0.80 7.61 -2.38 -0.02 0.79 16 Total: -1.00 -67.92 372.91 -0.03 -67.95 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -2.23 Total: 38.21 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 4.71 Total: -13.24 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -2.88 Total: -83.35 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.06 Total: -26.08 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 2.03 Total: 39.74 kcal Atomic # 16 Polarization: -21.65 SS G_CDS: -1.59 Total: -23.24 kcal Total: -67.92 -0.03 -67.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855102019.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.551 kcal (2) G-P(sol) polarization free energy of solvation -67.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds