Wall clock time and date at job start Tue Mar 31 2020 18:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47088 * 2 1 4 4 C 1.50694 * 109.47487 * 120.00461 * 2 1 3 5 5 C 1.38220 * 120.01280 * 59.71924 * 4 2 1 6 6 C 1.38224 * 120.02758 * 179.72316 * 5 4 2 7 7 C 1.38275 * 120.04776 * 0.56020 * 6 5 4 8 8 C 1.38170 * 120.02623 * 359.71785 * 7 6 5 9 9 C 1.38441 * 120.01652 * 240.00003 * 4 2 1 10 10 F 1.35105 * 120.01994 * 0.02562 * 9 4 2 11 11 C 1.53004 * 109.47035 * 240.00413 * 2 1 3 12 12 H 1.08998 * 109.47482 * 305.14550 * 11 2 1 13 13 O 1.42897 * 109.47224 * 185.14545 * 11 2 1 14 14 C 1.50697 * 109.47264 * 65.14568 * 11 2 1 15 15 O 1.21304 * 119.99871 * 293.65996 * 14 11 2 16 16 N 1.34780 * 119.99982 * 113.65557 * 14 11 2 17 17 C 1.40595 * 119.99908 * 175.03672 * 16 14 11 18 18 C 1.40652 * 126.08016 * 359.97438 * 17 16 14 19 19 N 1.30912 * 108.38362 * 179.77195 * 18 17 16 20 20 N 1.40071 * 108.40741 * 0.38734 * 19 18 17 21 21 C 1.37322 * 126.06689 * 179.87982 * 20 19 18 22 22 H 1.08001 * 119.99800 * 179.68925 * 21 20 19 23 23 C 1.38988 * 120.00204 * 359.40260 * 21 20 19 24 24 N 1.31294 * 119.99992 * 0.28503 * 23 21 20 25 25 Si 1.86798 * 120.00053 * 180.27640 * 23 21 20 26 26 H 1.48499 * 109.47247 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47251 * 120.00264 * 25 23 21 28 28 H 1.48499 * 109.47455 * 240.00376 * 25 23 21 29 29 C 1.35679 * 126.08377 * 179.97438 * 17 16 14 30 30 H 1.08998 * 109.47285 * 53.41367 * 1 2 3 31 31 H 1.09004 * 109.47119 * 173.41644 * 1 2 3 32 32 H 1.08998 * 109.46988 * 293.41821 * 1 2 3 33 33 H 1.08003 * 119.98728 * 0.02562 * 5 4 2 34 34 H 1.08000 * 119.97986 * 180.27956 * 6 5 4 35 35 H 1.07995 * 119.98691 * 179.74704 * 7 6 5 36 36 H 1.08001 * 120.01531 * 180.02562 * 8 7 6 37 37 H 0.96702 * 114.00267 * 300.00509 * 13 11 2 38 38 H 0.96994 * 120.00017 * 355.04006 * 16 14 11 39 39 H 1.07992 * 125.80989 * 0.02562 * 18 17 16 40 40 H 0.97002 * 119.99783 * 179.97438 * 24 23 21 41 41 H 1.07997 * 126.24314 * 0.02562 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 1.6939 -2.0321 1.4522 6 6 2.1592 -2.6857 2.5777 7 6 2.9543 -2.0151 3.4888 8 6 3.2892 -0.6922 3.2720 9 6 2.8283 -0.0380 2.1418 10 9 3.1547 1.2556 1.9291 11 6 2.0399 -0.7212 -1.2493 12 1 1.6033 -1.7188 -1.2967 13 8 3.4638 -0.8268 -1.1905 14 6 1.6444 0.0590 -2.4764 15 8 0.4738 0.1652 -2.7764 16 7 2.5912 0.6389 -3.2405 17 6 2.2322 1.2775 -4.4406 18 6 0.9312 1.3867 -4.9638 19 7 0.9936 2.0510 -6.0901 20 7 2.3323 2.3831 -6.3342 21 6 2.8080 3.0788 -7.4184 22 1 3.8643 3.2859 -7.5060 23 6 1.9308 3.5111 -8.4060 24 7 0.6467 3.2593 -8.2996 25 14 2.5789 4.4507 -9.8847 26 1 4.0514 4.6029 -9.7680 27 1 2.2559 3.7033 -11.1266 28 1 1.9447 5.7925 -9.9355 29 6 3.0792 1.8981 -5.2999 30 1 -0.3634 0.6125 -0.8252 31 1 -0.3633 -1.0209 -0.1178 32 1 -0.3633 0.4084 0.9430 33 1 1.0695 -2.5557 0.7433 34 1 1.8980 -3.7197 2.7479 35 1 3.3139 -2.5255 4.3699 36 1 3.9105 -0.1687 3.9836 37 1 3.9199 0.0248 -1.1464 38 1 3.5201 0.6156 -2.9626 39 1 0.0331 0.9934 -4.5111 40 1 0.0344 3.5614 -8.9887 41 1 4.1492 1.9906 -5.1866 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865056484.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:51 Heat of formation + Delta-G solvation = -21.219878 kcal Electronic energy + Delta-G solvation = -27871.246530 eV Core-core repulsion = 23667.723806 eV Total energy + Delta-G solvation = -4203.522724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.09589 -40.43932 -39.55617 -38.75215 -36.80255 -34.74827 -33.86548 -33.04862 -30.79733 -30.28465 -29.86108 -28.07922 -26.64640 -24.84677 -24.14214 -22.84992 -21.34380 -20.85919 -20.35834 -19.39740 -18.25330 -17.76638 -17.31766 -16.81185 -16.18380 -15.84523 -15.71783 -15.46403 -15.23112 -14.85986 -14.50779 -14.40941 -13.98885 -13.86994 -13.49204 -13.37479 -13.11469 -12.92855 -12.75319 -12.55497 -12.23184 -12.15601 -11.86331 -11.68426 -11.46694 -11.31049 -11.28113 -11.11445 -10.91233 -10.63639 -10.51586 -10.17065 -9.23648 -9.18720 -9.00715 -8.86179 -8.80220 -8.07539 -6.72288 -6.56991 -4.24071 0.90419 0.95158 2.70457 2.98992 3.04474 3.10600 3.30198 3.45439 3.65125 3.84403 4.01294 4.10666 4.32956 4.35269 4.45555 4.64946 4.70281 4.80976 4.85884 4.99538 5.01249 5.06512 5.16606 5.27997 5.51592 5.63230 5.73841 5.77673 5.87845 5.91582 6.10324 6.17062 6.23066 6.32953 6.41858 6.63424 6.85830 6.93461 7.06181 7.22144 7.25320 7.84509 8.13123 8.25917 8.58843 8.78690 9.36422 9.65386 10.39088 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.031230 B = 0.002311 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.362042 B =12113.088993 C =12428.275066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.077 4.077 3 H 0.089 0.911 4 C -0.094 4.094 5 C -0.082 4.082 6 C -0.127 4.127 7 C -0.098 4.098 8 C -0.153 4.153 9 C 0.100 3.900 10 F -0.138 7.138 11 C 0.109 3.891 12 H 0.130 0.870 13 O -0.549 6.549 14 C 0.471 3.529 15 O -0.528 6.528 16 N -0.617 5.617 17 C -0.061 4.061 18 C -0.032 4.032 19 N -0.260 5.260 20 N -0.142 5.142 21 C -0.322 4.322 22 H 0.117 0.883 23 C 0.046 3.954 24 N -0.770 5.770 25 Si 0.935 3.065 26 H -0.263 1.263 27 H -0.274 1.274 28 H -0.274 1.274 29 C -0.083 4.083 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.376 0.624 38 H 0.396 0.604 39 H 0.175 0.825 40 H 0.274 0.726 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 -8.802 20.513 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.096 4.096 3 H 0.107 0.893 4 C -0.094 4.094 5 C -0.100 4.100 6 C -0.145 4.145 7 C -0.116 4.116 8 C -0.172 4.172 9 C 0.081 3.919 10 F -0.117 7.117 11 C 0.046 3.954 12 H 0.147 0.853 13 O -0.354 6.354 14 C 0.256 3.744 15 O -0.405 6.405 16 N -0.260 5.260 17 C -0.167 4.167 18 C -0.208 4.208 19 N -0.091 5.091 20 N 0.090 4.910 21 C -0.455 4.455 22 H 0.134 0.866 23 C -0.172 4.172 24 N -0.396 5.396 25 Si 0.759 3.241 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.199 1.199 29 C -0.234 4.234 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.223 0.777 38 H 0.230 0.770 39 H 0.192 0.808 40 H 0.085 0.915 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.538 -8.812 19.142 21.368 hybrid contribution 1.563 0.864 0.246 1.803 sum 5.101 -7.948 19.388 21.566 Atomic orbital electron populations 1.21875 0.91795 1.03395 1.03089 1.20668 0.98506 0.99647 0.90760 0.89308 1.19701 0.98555 0.95120 0.96073 1.20904 0.98687 0.92995 0.97389 1.21192 0.98426 1.00342 0.94576 1.20985 0.97613 0.93553 0.99427 1.21110 1.02755 0.96003 0.97315 1.17552 0.99070 0.79077 0.96177 1.91493 1.91016 1.34375 1.94805 1.22270 0.81628 1.00588 0.90891 0.85279 1.86634 1.17282 1.34937 1.96544 1.20985 0.86364 0.81358 0.85661 1.90604 1.17832 1.60771 1.71336 1.42487 1.09868 1.52991 1.20647 1.17271 0.94418 1.13288 0.91695 1.24085 0.96511 1.04496 0.95709 1.78258 0.95169 1.19810 1.15901 1.44557 1.03943 1.30134 1.12326 1.19924 0.94829 1.33465 0.97256 0.86559 1.25651 0.95024 0.97033 0.99449 1.70227 1.02058 1.35529 1.31810 0.85759 0.79444 0.79018 0.79898 1.18679 1.19908 1.19901 1.21272 0.96523 1.11534 0.94078 0.89541 0.92062 0.92545 0.85048 0.85376 0.85233 0.84909 0.77667 0.76953 0.80778 0.91503 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.34 37.15 0.31 -1.36 16 2 C -0.08 -0.86 2.29 -91.78 -0.21 -1.07 16 3 H 0.09 1.07 7.13 -51.93 -0.37 0.70 16 4 C -0.09 -0.96 4.30 -104.56 -0.45 -1.41 16 5 C -0.08 -0.72 8.83 -39.59 -0.35 -1.07 16 6 C -0.13 -0.95 10.05 -39.57 -0.40 -1.35 16 7 C -0.10 -0.71 10.04 -39.59 -0.40 -1.10 16 8 C -0.15 -1.31 10.03 -39.52 -0.40 -1.70 16 9 C 0.10 1.05 7.25 -39.42 -0.29 0.77 16 10 F -0.14 -1.60 16.19 2.25 0.04 -1.57 16 11 C 0.11 1.32 2.82 -27.88 -0.08 1.25 16 12 H 0.13 1.49 7.59 -51.93 -0.39 1.10 16 13 O -0.55 -6.12 12.16 -35.23 -0.43 -6.55 16 14 C 0.47 7.86 7.06 -10.99 -0.08 7.78 16 15 O -0.53 -10.59 11.97 5.54 0.07 -10.52 16 16 N -0.62 -10.74 5.38 -10.00 -0.05 -10.80 16 17 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 18 C -0.03 -0.85 10.85 -17.03 -0.18 -1.04 16 19 N -0.26 -7.57 10.40 30.80 0.32 -7.25 16 20 N -0.14 -3.90 3.74 -11.41 -0.04 -3.95 16 21 C -0.32 -8.54 10.25 -14.81 -0.15 -8.70 16 22 H 0.12 2.76 7.83 -52.49 -0.41 2.35 16 23 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 24 N -0.77 -21.55 11.81 55.49 0.66 -20.89 16 25 Si 0.93 18.96 29.55 -169.99 -5.02 13.93 16 26 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 29 C -0.08 -1.96 11.49 -16.40 -0.19 -2.14 16 30 H 0.09 1.23 6.28 -51.93 -0.33 0.91 16 31 H 0.06 0.64 7.61 -51.93 -0.40 0.24 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.13 1.01 7.25 -52.48 -0.38 0.63 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.38 3.20 7.95 45.56 0.36 3.57 16 38 H 0.40 5.41 7.04 -40.82 -0.29 5.12 16 39 H 0.18 4.49 5.94 -52.49 -0.31 4.18 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -33.81 351.81 -6.46 -40.27 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -3.76 Total: 14.08 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -3.53 Total: -12.06 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.88 Total: -42.89 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.36 Total: -17.07 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.81 -6.46 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056484.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.049 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds