Wall clock time and date at job start Tue Mar 31 2020 18:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47306 * 2 1 4 4 C 1.50700 * 109.47037 * 119.99333 * 2 1 3 5 5 C 1.38224 * 120.01062 * 59.72937 * 4 2 1 6 6 C 1.38218 * 120.02736 * 179.71984 * 5 4 2 7 7 C 1.38267 * 120.05145 * 0.55223 * 6 5 4 8 8 C 1.38175 * 120.02361 * 359.72490 * 7 6 5 9 9 C 1.38436 * 120.02070 * 239.99849 * 4 2 1 10 10 F 1.35106 * 120.02144 * 0.02960 * 9 4 2 11 11 C 1.52995 * 109.47578 * 239.99684 * 2 1 3 12 12 H 1.09001 * 109.47751 * 185.00412 * 11 2 1 13 13 O 1.42902 * 109.47070 * 305.00243 * 11 2 1 14 14 C 1.50696 * 109.47391 * 64.99979 * 11 2 1 15 15 O 1.21297 * 120.00357 * 245.00820 * 14 11 2 16 16 N 1.34779 * 120.00001 * 64.99937 * 14 11 2 17 17 C 1.40588 * 120.00316 * 180.02562 * 16 14 11 18 18 C 1.40654 * 126.08389 * 0.02562 * 17 16 14 19 19 N 1.30905 * 108.38683 * 179.72009 * 18 17 16 20 20 N 1.40064 * 108.40777 * 0.43987 * 19 18 17 21 21 C 1.37321 * 126.06857 * 179.82149 * 20 19 18 22 22 H 1.07998 * 120.00111 * 173.76490 * 21 20 19 23 23 C 1.38990 * 120.00353 * 354.03771 * 21 20 19 24 24 N 1.31294 * 119.99607 * 5.58222 * 23 21 20 25 25 Si 1.86794 * 120.00402 * 185.58712 * 23 21 20 26 26 H 1.48500 * 109.47486 * 94.97709 * 25 23 21 27 27 H 1.48508 * 109.47057 * 214.97869 * 25 23 21 28 28 H 1.48506 * 109.47163 * 334.97268 * 25 23 21 29 29 C 1.35688 * 126.08302 * 180.02562 * 17 16 14 30 30 H 1.09007 * 109.46929 * 60.00304 * 1 2 3 31 31 H 1.08994 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47050 * 300.00642 * 1 2 3 33 33 H 1.08002 * 119.98506 * 359.97438 * 5 4 2 34 34 H 1.08004 * 119.97887 * 180.27557 * 6 5 4 35 35 H 1.07996 * 119.99175 * 179.69975 * 7 6 5 36 36 H 1.08003 * 120.01413 * 180.02562 * 8 7 6 37 37 H 0.96700 * 114.00097 * 59.99609 * 13 11 2 38 38 H 0.97003 * 120.00020 * 0.02562 * 16 14 11 39 39 H 1.07997 * 125.80177 * 0.02562 * 18 17 16 40 40 H 0.96998 * 120.00233 * 180.02562 * 24 23 21 41 41 H 1.07997 * 126.24694 * 0.03480 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6939 -2.0319 1.4525 6 6 2.1591 -2.6854 2.5781 7 6 2.9541 -2.0148 3.4891 8 6 3.2890 -0.6919 3.2723 9 6 2.8282 -0.0378 2.1420 10 9 3.1547 1.2558 1.9292 11 6 2.0401 -0.7213 -1.2491 12 1 3.1264 -0.7996 -1.2055 13 8 1.4703 -2.0304 -1.3093 14 6 1.6415 0.0569 -2.4765 15 8 0.8660 -0.4252 -3.2750 16 7 2.1465 1.2886 -2.6871 17 6 1.7743 2.0148 -3.8318 18 6 0.8889 1.5824 -4.8356 19 7 0.7873 2.5302 -5.7328 20 7 1.6079 3.5968 -5.3445 21 6 1.7770 4.7767 -6.0263 22 1 2.3566 5.5755 -5.5877 23 6 1.1974 4.9451 -7.2783 24 7 0.3992 4.0216 -7.7617 25 14 1.5542 6.4853 -8.2732 26 1 2.6692 6.2178 -9.2169 27 1 0.3413 6.8731 -9.0373 28 1 1.9357 7.5895 -7.3564 29 6 2.2053 3.2576 -4.1650 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.0690 -2.5554 0.7440 34 1 1.8979 -3.7195 2.7484 35 1 3.3131 -2.5249 4.3707 36 1 3.9103 -0.1682 3.9838 37 1 0.5042 -2.0374 -1.3503 38 1 2.7669 1.6741 -2.0487 39 1 0.3761 0.6323 -4.8593 40 1 -0.0050 4.1389 -8.6356 41 1 2.8954 3.8668 -3.6003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865056485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:55 Heat of formation + Delta-G solvation = -23.550529 kcal Electronic energy + Delta-G solvation = -27952.103234 eV Core-core repulsion = 23748.479445 eV Total energy + Delta-G solvation = -4203.623788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.10825 -40.48188 -39.58240 -38.75072 -36.76219 -34.46882 -33.77432 -33.10113 -30.81086 -30.31358 -29.82988 -28.34624 -26.90893 -24.85285 -23.95199 -22.85934 -21.36441 -20.83380 -20.20404 -19.39189 -18.01165 -17.71681 -17.29723 -16.86221 -16.21348 -15.91588 -15.70851 -15.57995 -15.43725 -14.94642 -14.57002 -14.33609 -14.05337 -13.82851 -13.60545 -13.37194 -13.03756 -12.93902 -12.66496 -12.56474 -12.27677 -12.07800 -11.80284 -11.64665 -11.46977 -11.40000 -11.28299 -11.16084 -10.94347 -10.53390 -10.50117 -10.18352 -9.27659 -9.18615 -9.06880 -8.85258 -8.77523 -8.07168 -6.72318 -6.57180 -4.24101 0.88068 0.97006 2.72470 2.99974 3.04558 3.09961 3.31707 3.50388 3.65140 3.85622 4.00689 4.09857 4.33164 4.41078 4.46174 4.63448 4.67531 4.79822 4.82756 5.00082 5.00548 5.04584 5.13604 5.19796 5.45149 5.56803 5.68015 5.70462 5.82645 5.88140 6.01984 6.13505 6.18970 6.23366 6.43191 6.64030 6.87134 6.94036 7.07962 7.22334 7.40844 7.84918 8.13010 8.25995 8.59521 8.79339 9.36837 9.65679 10.39102 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.002447 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.037922 B =11441.000906 C =12207.941874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.097 0.903 4 C -0.108 4.108 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.095 4.095 8 C -0.158 4.158 9 C 0.100 3.900 10 F -0.138 7.138 11 C 0.107 3.893 12 H 0.121 0.879 13 O -0.533 6.533 14 C 0.472 3.528 15 O -0.528 6.528 16 N -0.619 5.619 17 C -0.062 4.062 18 C -0.032 4.032 19 N -0.261 5.261 20 N -0.142 5.142 21 C -0.324 4.324 22 H 0.116 0.884 23 C 0.046 3.954 24 N -0.770 5.770 25 Si 0.935 3.065 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.264 1.264 29 C -0.082 4.082 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.143 0.857 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.381 0.619 38 H 0.397 0.603 39 H 0.175 0.825 40 H 0.275 0.725 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -9.043 20.940 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.115 0.885 4 C -0.109 4.109 5 C -0.089 4.089 6 C -0.151 4.151 7 C -0.113 4.113 8 C -0.177 4.177 9 C 0.081 3.919 10 F -0.116 7.116 11 C 0.044 3.956 12 H 0.138 0.862 13 O -0.339 6.339 14 C 0.257 3.743 15 O -0.405 6.405 16 N -0.262 5.262 17 C -0.167 4.167 18 C -0.208 4.208 19 N -0.092 5.092 20 N 0.090 4.910 21 C -0.456 4.456 22 H 0.134 0.866 23 C -0.171 4.171 24 N -0.396 5.396 25 Si 0.758 3.242 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.188 1.188 29 C -0.233 4.233 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.231 0.769 38 H 0.230 0.770 39 H 0.192 0.808 40 H 0.085 0.915 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.549 -9.224 19.071 21.480 hybrid contribution 0.571 1.171 0.734 1.495 sum 4.120 -8.053 19.805 21.773 Atomic orbital electron populations 1.21880 0.92850 1.02674 1.03428 1.20735 0.97779 1.00059 0.91448 0.88506 1.19750 0.99568 0.95370 0.96253 1.21184 0.98275 0.92796 0.96633 1.21252 0.98706 1.00452 0.94693 1.21017 0.97403 0.93540 0.99386 1.21106 1.03089 0.96042 0.97435 1.17603 0.99124 0.79070 0.96114 1.91498 1.91000 1.34328 1.94781 1.21766 0.99655 0.83839 0.90352 0.86164 1.86562 1.26510 1.24907 1.95937 1.21096 0.82731 0.81989 0.88499 1.90616 1.35145 1.68463 1.46231 1.42566 1.45306 1.15578 1.22790 1.17281 1.11248 0.94583 0.93612 1.24091 1.02487 1.00793 0.93415 1.78248 1.14403 0.94947 1.21617 1.44547 1.23671 1.11157 1.11595 1.19881 1.34818 0.90515 1.00377 0.86605 1.25648 0.95019 0.99173 0.97246 1.70222 1.21234 1.31517 1.16628 0.85813 0.78557 0.80132 0.79657 1.19627 1.20096 1.18777 1.21282 1.09341 0.97630 0.95090 0.90998 0.91853 0.91605 0.83967 0.85399 0.85278 0.84908 0.76922 0.77018 0.80795 0.91461 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.39 37.16 0.31 -1.24 16 2 C -0.08 -0.85 2.43 -91.78 -0.22 -1.07 16 3 H 0.10 1.04 6.76 -51.93 -0.35 0.69 16 4 C -0.11 -1.07 4.79 -104.55 -0.50 -1.57 16 5 C -0.07 -0.62 8.43 -39.59 -0.33 -0.96 16 6 C -0.13 -0.99 10.04 -39.58 -0.40 -1.39 16 7 C -0.10 -0.68 10.04 -39.59 -0.40 -1.08 16 8 C -0.16 -1.32 10.03 -39.52 -0.40 -1.71 16 9 C 0.10 1.01 7.25 -39.42 -0.29 0.73 16 10 F -0.14 -1.54 16.20 2.25 0.04 -1.50 16 11 C 0.11 1.30 3.10 -27.89 -0.09 1.22 16 12 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 13 O -0.53 -6.41 10.35 -55.09 -0.57 -6.98 16 14 C 0.47 7.89 6.12 -10.99 -0.07 7.82 16 15 O -0.53 -10.87 13.48 -14.32 -0.19 -11.06 16 16 N -0.62 -10.74 5.37 -10.00 -0.05 -10.79 16 17 C -0.06 -1.41 6.90 -83.84 -0.58 -1.99 16 18 C -0.03 -0.85 10.85 -17.04 -0.18 -1.03 16 19 N -0.26 -7.61 10.42 30.80 0.32 -7.29 16 20 N -0.14 -3.90 3.74 -11.41 -0.04 -3.95 16 21 C -0.32 -8.58 10.24 -14.81 -0.15 -8.73 16 22 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 23 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 24 N -0.77 -21.57 11.84 55.50 0.66 -20.91 16 25 Si 0.93 18.98 29.56 -169.99 -5.02 13.95 16 26 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 27 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 28 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 29 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 30 H 0.07 0.90 7.38 -51.92 -0.38 0.52 16 31 H 0.06 0.54 5.95 -51.93 -0.31 0.23 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.14 1.15 5.74 -52.49 -0.30 0.85 16 34 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.38 3.95 6.88 45.56 0.31 4.26 16 38 H 0.40 5.42 8.53 -40.82 -0.35 5.07 16 39 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.15 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -33.90 349.67 -6.95 -40.85 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -3.77 Total: 14.43 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.58 Total: -12.03 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.88 Total: -42.94 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.76 Total: -18.04 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.90 -6.95 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.297 kcal (2) G-P(sol) polarization free energy of solvation -33.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds