Wall clock time and date at job start Tue Mar 31 2020 18:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47306 * 2 1 4 4 C 1.50700 * 109.47037 * 119.99333 * 2 1 3 5 5 C 1.38224 * 120.01062 * 59.72937 * 4 2 1 6 6 C 1.38218 * 120.02736 * 179.71984 * 5 4 2 7 7 C 1.38267 * 120.05145 * 0.55223 * 6 5 4 8 8 C 1.38175 * 120.02361 * 359.72490 * 7 6 5 9 9 C 1.38436 * 120.02070 * 239.99849 * 4 2 1 10 10 F 1.35106 * 120.02144 * 0.02960 * 9 4 2 11 11 C 1.52995 * 109.47578 * 239.99684 * 2 1 3 12 12 H 1.09001 * 109.47751 * 185.00412 * 11 2 1 13 13 O 1.42902 * 109.47070 * 305.00243 * 11 2 1 14 14 C 1.50696 * 109.47391 * 64.99979 * 11 2 1 15 15 O 1.21297 * 120.00357 * 245.00820 * 14 11 2 16 16 N 1.34779 * 120.00001 * 64.99937 * 14 11 2 17 17 C 1.40588 * 120.00316 * 180.02562 * 16 14 11 18 18 C 1.40654 * 126.08389 * 0.02562 * 17 16 14 19 19 N 1.30905 * 108.38683 * 179.72009 * 18 17 16 20 20 N 1.40064 * 108.40777 * 0.43987 * 19 18 17 21 21 C 1.37321 * 126.06857 * 179.82149 * 20 19 18 22 22 H 1.07998 * 120.00111 * 173.76490 * 21 20 19 23 23 C 1.38990 * 120.00353 * 354.03771 * 21 20 19 24 24 N 1.31294 * 119.99607 * 5.58222 * 23 21 20 25 25 Si 1.86794 * 120.00402 * 185.58712 * 23 21 20 26 26 H 1.48500 * 109.47486 * 94.97709 * 25 23 21 27 27 H 1.48508 * 109.47057 * 214.97869 * 25 23 21 28 28 H 1.48506 * 109.47163 * 334.97268 * 25 23 21 29 29 C 1.35688 * 126.08302 * 180.02562 * 17 16 14 30 30 H 1.09007 * 109.46929 * 60.00304 * 1 2 3 31 31 H 1.08994 * 109.47156 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47050 * 300.00642 * 1 2 3 33 33 H 1.08002 * 119.98506 * 359.97438 * 5 4 2 34 34 H 1.08004 * 119.97887 * 180.27557 * 6 5 4 35 35 H 1.07996 * 119.99175 * 179.69975 * 7 6 5 36 36 H 1.08003 * 120.01413 * 180.02562 * 8 7 6 37 37 H 0.96700 * 114.00097 * 59.99609 * 13 11 2 38 38 H 0.97003 * 120.00020 * 0.02562 * 16 14 11 39 39 H 1.07997 * 125.80177 * 0.02562 * 18 17 16 40 40 H 0.96998 * 120.00233 * 180.02562 * 24 23 21 41 41 H 1.07997 * 126.24694 * 0.03480 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.6939 -2.0319 1.4525 6 6 2.1591 -2.6854 2.5781 7 6 2.9541 -2.0148 3.4891 8 6 3.2890 -0.6919 3.2723 9 6 2.8282 -0.0378 2.1420 10 9 3.1547 1.2558 1.9292 11 6 2.0401 -0.7213 -1.2491 12 1 3.1264 -0.7996 -1.2055 13 8 1.4703 -2.0304 -1.3093 14 6 1.6415 0.0569 -2.4765 15 8 0.8660 -0.4252 -3.2750 16 7 2.1465 1.2886 -2.6871 17 6 1.7743 2.0148 -3.8318 18 6 0.8889 1.5824 -4.8356 19 7 0.7873 2.5302 -5.7328 20 7 1.6079 3.5968 -5.3445 21 6 1.7770 4.7767 -6.0263 22 1 2.3566 5.5755 -5.5877 23 6 1.1974 4.9451 -7.2783 24 7 0.3992 4.0216 -7.7617 25 14 1.5542 6.4853 -8.2732 26 1 2.6692 6.2178 -9.2169 27 1 0.3413 6.8731 -9.0373 28 1 1.9357 7.5895 -7.3564 29 6 2.2053 3.2576 -4.1650 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.0690 -2.5554 0.7440 34 1 1.8979 -3.7195 2.7484 35 1 3.3131 -2.5249 4.3707 36 1 3.9103 -0.1682 3.9838 37 1 0.5042 -2.0374 -1.3503 38 1 2.7669 1.6741 -2.0487 39 1 0.3761 0.6323 -4.8593 40 1 -0.0050 4.1389 -8.6356 41 1 2.8954 3.8668 -3.6003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865056485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:54 Heat of formation + Delta-G solvation = -46.003597 kcal Electronic energy + Delta-G solvation = -27953.076872 eV Core-core repulsion = 23748.479445 eV Total energy + Delta-G solvation = -4204.597426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.86346 -41.90085 -41.02104 -39.84417 -37.85729 -36.00958 -35.15462 -34.53183 -32.27974 -31.42825 -30.71085 -29.82552 -28.27868 -26.64869 -24.83485 -23.54793 -22.92537 -22.25946 -21.49404 -21.02084 -19.43227 -18.89021 -18.40757 -17.69246 -17.43265 -17.26891 -17.01989 -16.60857 -16.46024 -16.25720 -15.77437 -15.55691 -15.21989 -15.14061 -14.89110 -14.83273 -14.40775 -14.09199 -13.56102 -13.47631 -13.40690 -13.28953 -12.99330 -12.96557 -12.84923 -12.80680 -12.68624 -12.19053 -12.07481 -11.93623 -11.83047 -11.49555 -11.04010 -10.83769 -10.46629 -10.11469 -9.81325 -9.53992 -8.55612 -8.48622 -6.25659 0.23573 0.35178 1.17383 1.39101 1.46762 1.57341 1.83880 2.00698 2.24176 2.48106 2.71473 2.87672 3.06756 3.17250 3.34528 3.53549 3.64802 3.80735 3.94141 4.00576 4.18009 4.30624 4.41192 4.44381 4.50962 4.57069 4.58764 4.74589 4.90238 4.99429 5.03988 5.05801 5.16591 5.20490 5.27868 5.29876 5.43383 5.50364 5.58345 5.94661 6.03154 6.28803 6.45232 6.70925 6.72465 7.30904 7.45120 7.66585 8.51065 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026408 B = 0.002447 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.037922 B =11441.000906 C =12207.941874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 H 0.094 0.906 4 C -0.118 4.118 5 C -0.080 4.080 6 C -0.132 4.132 7 C -0.091 4.091 8 C -0.162 4.162 9 C 0.078 3.922 10 F -0.149 7.149 11 C 0.124 3.876 12 H 0.137 0.863 13 O -0.535 6.535 14 C 0.473 3.527 15 O -0.567 6.567 16 N -0.612 5.612 17 C -0.045 4.045 18 C -0.058 4.058 19 N -0.311 5.311 20 N -0.168 5.168 21 C -0.354 4.354 22 H 0.140 0.860 23 C -0.007 4.007 24 N -0.825 5.825 25 Si 1.019 2.981 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.243 1.243 29 C -0.081 4.081 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.388 0.612 38 H 0.417 0.583 39 H 0.168 0.832 40 H 0.276 0.724 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.867 -9.039 23.497 25.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 H 0.112 0.888 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.150 4.150 7 C -0.109 4.109 8 C -0.181 4.181 9 C 0.059 3.941 10 F -0.128 7.128 11 C 0.061 3.939 12 H 0.155 0.845 13 O -0.341 6.341 14 C 0.260 3.740 15 O -0.446 6.446 16 N -0.259 5.259 17 C -0.151 4.151 18 C -0.234 4.234 19 N -0.143 5.143 20 N 0.063 4.937 21 C -0.485 4.485 22 H 0.158 0.842 23 C -0.218 4.218 24 N -0.452 5.452 25 Si 0.838 3.162 26 H -0.192 1.192 27 H -0.201 1.201 28 H -0.165 1.165 29 C -0.231 4.231 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.165 0.835 37 H 0.239 0.761 38 H 0.254 0.746 39 H 0.185 0.815 40 H 0.086 0.914 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.258 -9.234 21.694 24.157 hybrid contribution 0.054 0.994 0.129 1.004 sum 5.312 -8.240 21.823 23.924 Atomic orbital electron populations 1.21858 0.92914 1.03479 1.02362 1.20591 0.97657 0.99775 0.91038 0.88796 1.19641 1.00420 0.95882 0.95968 1.21326 0.98556 0.92444 0.97441 1.21584 0.97923 1.01530 0.93951 1.21391 0.96404 0.93020 1.00035 1.21381 1.02973 0.96696 0.97041 1.17867 1.00139 0.78889 0.97181 1.91464 1.91231 1.35152 1.94955 1.21723 1.00468 0.83251 0.88464 0.84533 1.86555 1.27283 1.24561 1.95749 1.22086 0.81240 0.81478 0.89213 1.90602 1.36723 1.69273 1.47979 1.42542 1.45925 1.15704 1.21679 1.17344 1.09163 0.94480 0.94104 1.24151 1.03975 1.00519 0.94706 1.78139 1.16283 0.96366 1.23498 1.44834 1.24459 1.11346 1.13022 1.20615 1.35631 0.91064 1.01226 0.84236 1.26892 0.94063 1.02756 0.98128 1.70399 1.23139 1.34403 1.17306 0.84576 0.78159 0.75723 0.77736 1.19177 1.20112 1.16544 1.22011 1.08965 0.98085 0.94058 0.93741 0.90216 0.90855 0.83585 0.83084 0.82423 0.83475 0.76100 0.74579 0.81536 0.91380 0.79643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.39 71.98 0.60 -2.34 16 2 C -0.07 -1.41 2.43 -11.54 -0.03 -1.43 16 3 H 0.09 1.91 6.76 -2.39 -0.02 1.89 16 4 C -0.12 -2.12 4.79 -19.82 -0.09 -2.21 16 5 C -0.08 -1.20 8.43 22.26 0.19 -1.02 16 6 C -0.13 -1.53 10.04 22.27 0.22 -1.31 16 7 C -0.09 -0.97 10.04 22.26 0.22 -0.75 16 8 C -0.16 -2.29 10.03 22.31 0.22 -2.06 16 9 C 0.08 1.45 7.25 22.37 0.16 1.61 16 10 F -0.15 -3.16 16.20 44.97 0.73 -2.43 16 11 C 0.12 2.85 3.10 29.85 0.09 2.95 16 12 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 13 O -0.53 -12.09 10.35 -129.99 -1.35 -13.44 16 14 C 0.47 15.68 6.12 87.66 0.54 16.21 16 15 O -0.57 -23.87 13.48 15.91 0.21 -23.66 16 16 N -0.61 -20.85 5.37 -303.93 -1.63 -22.48 16 17 C -0.04 -2.06 6.90 37.73 0.26 -1.80 16 18 C -0.06 -3.19 10.85 85.42 0.93 -2.27 16 19 N -0.31 -18.92 10.42 -56.47 -0.59 -19.51 16 20 N -0.17 -9.39 3.74 -190.01 -0.71 -10.10 16 21 C -0.35 -18.92 10.24 84.01 0.86 -18.06 16 22 H 0.14 6.47 7.84 -2.91 -0.02 6.44 16 23 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 24 N -0.82 -48.04 11.84 21.66 0.26 -47.78 16 25 Si 1.02 38.91 29.56 68.60 2.03 40.94 16 26 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 27 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 28 H -0.24 -8.33 7.11 99.48 0.71 -7.62 16 29 C -0.08 -3.77 11.49 83.38 0.96 -2.81 16 30 H 0.04 1.12 7.38 -2.38 -0.02 1.11 16 31 H 0.08 1.27 5.95 -2.39 -0.01 1.26 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.15 2.02 5.74 -2.91 -0.02 2.00 16 34 H 0.15 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 37 H 0.39 7.65 6.88 -74.06 -0.51 7.14 16 38 H 0.42 10.69 8.53 -92.71 -0.79 9.90 16 39 H 0.17 9.20 5.92 -2.91 -0.02 9.19 16 40 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.19 6.85 8.06 -2.91 -0.02 6.83 16 Total: -1.00 -77.41 349.67 4.37 -73.04 By element: Atomic # 1 Polarization: 40.79 SS G_CDS: -0.19 Total: 40.60 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 5.60 Total: -15.18 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -2.67 Total: -99.87 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -1.13 Total: -37.10 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.73 Total: -2.43 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -77.41 4.37 -73.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.039 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds