Wall clock time and date at job start Tue Mar 31 2020 18:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46973 * 2 1 4 4 C 1.50699 * 109.47337 * 240.00581 * 2 1 3 5 5 C 1.38227 * 120.00534 * 299.99592 * 4 2 1 6 6 C 1.38227 * 120.02318 * 179.97438 * 5 4 2 7 7 C 1.38264 * 120.04805 * 0.02562 * 6 5 4 8 8 C 1.38180 * 120.03063 * 0.02562 * 7 6 5 9 9 C 1.38431 * 120.01832 * 119.72004 * 4 2 1 10 10 F 1.35095 * 120.02566 * 0.02562 * 9 4 2 11 11 C 1.53002 * 109.47260 * 119.99752 * 2 1 3 12 12 H 1.08997 * 109.46581 * 61.76236 * 11 2 1 13 13 O 1.42894 * 109.46877 * 181.76087 * 11 2 1 14 14 C 1.50699 * 109.47074 * 301.76201 * 11 2 1 15 15 O 1.21299 * 120.00303 * 254.95541 * 14 11 2 16 16 N 1.34776 * 119.99925 * 74.96014 * 14 11 2 17 17 C 1.40598 * 119.99993 * 174.83150 * 16 14 11 18 18 C 1.40644 * 126.08000 * 0.04736 * 17 16 14 19 19 N 1.30912 * 108.38396 * 179.70068 * 18 17 16 20 20 N 1.40064 * 108.40698 * 0.40566 * 19 18 17 21 21 C 1.37323 * 126.06919 * 179.85463 * 20 19 18 22 22 H 1.08003 * 119.99845 * 184.82167 * 21 20 19 23 23 C 1.38986 * 120.00130 * 4.54829 * 21 20 19 24 24 N 1.31297 * 119.99931 * 355.10108 * 23 21 20 25 25 Si 1.86803 * 120.00205 * 175.10247 * 23 21 20 26 26 H 1.48498 * 109.47014 * 94.99839 * 25 23 21 27 27 H 1.48499 * 109.46850 * 214.99453 * 25 23 21 28 28 H 1.48494 * 109.46890 * 334.99520 * 25 23 21 29 29 C 1.35681 * 126.08060 * 179.97438 * 17 16 14 30 30 H 1.09001 * 109.47533 * 67.60334 * 1 2 3 31 31 H 1.08993 * 109.47079 * 187.60705 * 1 2 3 32 32 H 1.09004 * 109.47387 * 307.60892 * 1 2 3 33 33 H 1.08002 * 119.98968 * 359.95874 * 5 4 2 34 34 H 1.07996 * 119.97185 * 180.02562 * 6 5 4 35 35 H 1.08008 * 119.98744 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.01115 * 179.97438 * 8 7 6 37 37 H 0.96699 * 114.00734 * 60.00623 * 13 11 2 38 38 H 0.97001 * 120.00104 * 354.83161 * 16 14 11 39 39 H 1.08000 * 125.81012 * 359.95772 * 18 17 16 40 40 H 0.96995 * 119.99948 * 179.97438 * 24 23 21 41 41 H 1.07997 * 126.24862 * 0.07032 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.6986 -2.0336 -1.4495 6 6 2.1587 -2.6853 -2.5783 7 6 2.9537 -2.0146 -3.4892 8 6 3.2895 -0.6919 -3.2719 9 6 2.8235 -0.0361 -2.1448 10 9 3.1461 1.2588 -1.9344 11 6 2.0400 -0.7212 1.2493 12 1 1.7027 -1.7575 1.2336 13 8 3.4683 -0.6854 1.2701 14 6 1.5023 -0.0364 2.4793 15 8 2.2299 0.6653 3.1498 16 7 0.2130 -0.2037 2.8345 17 6 -0.2613 0.3452 4.0388 18 6 0.4932 1.0886 4.9641 19 7 -0.2911 1.4339 5.9538 20 7 -1.5697 0.9191 5.7052 21 6 -2.6707 1.0639 6.5130 22 1 -3.5928 0.5593 6.2647 23 6 -2.5969 1.8553 7.6531 24 7 -1.4505 2.3863 8.0106 25 14 -4.1286 2.1635 8.6771 26 1 -4.1845 1.1835 9.7914 27 1 -4.0849 3.5407 9.2308 28 1 -5.3338 2.0113 7.8230 29 6 -1.5287 0.2532 4.5144 30 1 -0.3634 0.3915 -0.9501 31 1 -0.3633 -1.0186 0.1360 32 1 -0.3634 0.6272 0.8141 33 1 1.0782 -2.5587 -0.7382 34 1 1.8971 -3.7192 -2.7487 35 1 3.3130 -2.5249 -4.3707 36 1 3.9108 -0.1684 -3.9835 37 1 3.8393 0.2075 1.2847 38 1 -0.3877 -0.7029 2.2592 39 1 1.5404 1.3362 4.8718 40 1 -1.3991 2.9389 8.8060 41 1 -2.3542 -0.2547 4.0381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865056486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:59 Heat of formation + Delta-G solvation = -21.298550 kcal Electronic energy + Delta-G solvation = -27917.288887 eV Core-core repulsion = 23713.762752 eV Total energy + Delta-G solvation = -4203.526135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.09718 -40.46670 -39.55483 -38.77564 -36.56960 -34.85625 -33.88540 -33.09056 -30.82301 -30.36451 -29.90320 -28.03123 -26.71687 -24.94063 -24.08088 -22.87118 -21.32728 -20.96269 -20.23008 -19.47059 -18.16869 -17.66863 -17.35088 -16.83425 -16.17335 -15.85647 -15.77630 -15.49061 -15.18589 -15.02023 -14.46600 -14.32492 -14.15361 -13.77643 -13.64923 -13.38165 -13.13038 -12.97952 -12.80180 -12.55905 -12.35213 -12.13919 -11.88163 -11.67333 -11.47204 -11.31811 -11.26974 -11.13681 -10.95336 -10.55941 -10.54246 -10.15735 -9.32779 -9.18131 -9.06706 -8.85814 -8.78915 -8.07786 -6.72936 -6.57705 -4.24681 0.88649 0.92575 2.70675 2.98803 3.03913 3.09557 3.30114 3.48462 3.64093 3.84688 4.00567 4.12784 4.32474 4.39858 4.44591 4.62115 4.66526 4.78776 4.82778 4.95980 4.99978 5.04530 5.11081 5.17656 5.34516 5.50174 5.61709 5.70726 5.76146 5.87331 5.97569 6.08830 6.12362 6.21505 6.42257 6.61196 6.86149 6.93185 7.07530 7.21617 7.48898 7.83979 8.11620 8.25017 8.58588 8.78318 9.36081 9.65044 10.38494 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.002334 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.066548 B =11993.610011 C =12298.961231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.082 4.082 3 H 0.093 0.907 4 C -0.094 4.094 5 C -0.085 4.085 6 C -0.127 4.127 7 C -0.097 4.097 8 C -0.153 4.153 9 C 0.103 3.897 10 F -0.137 7.137 11 C 0.108 3.892 12 H 0.119 0.881 13 O -0.535 6.535 14 C 0.472 3.528 15 O -0.528 6.528 16 N -0.620 5.620 17 C -0.063 4.063 18 C -0.032 4.032 19 N -0.261 5.261 20 N -0.142 5.142 21 C -0.324 4.324 22 H 0.116 0.884 23 C 0.046 3.954 24 N -0.769 5.769 25 Si 0.934 3.066 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.263 1.263 29 C -0.083 4.083 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.384 0.616 38 H 0.397 0.603 39 H 0.175 0.825 40 H 0.275 0.725 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 -8.821 -21.370 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.101 4.101 3 H 0.112 0.888 4 C -0.095 4.095 5 C -0.103 4.103 6 C -0.145 4.145 7 C -0.115 4.115 8 C -0.172 4.172 9 C 0.084 3.916 10 F -0.116 7.116 11 C 0.044 3.956 12 H 0.136 0.864 13 O -0.340 6.340 14 C 0.257 3.743 15 O -0.405 6.405 16 N -0.265 5.265 17 C -0.169 4.169 18 C -0.208 4.208 19 N -0.092 5.092 20 N 0.091 4.909 21 C -0.456 4.456 22 H 0.134 0.866 23 C -0.171 4.171 24 N -0.395 5.395 25 Si 0.758 3.242 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.187 1.187 29 C -0.234 4.234 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.151 0.849 37 H 0.233 0.767 38 H 0.232 0.768 39 H 0.191 0.809 40 H 0.086 0.914 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.006 -8.154 -19.577 21.582 hybrid contribution -0.844 0.212 -0.663 1.094 sum 3.162 -7.942 -20.240 21.971 Atomic orbital electron populations 1.22068 0.92671 1.02946 1.03894 1.20756 0.97555 1.00408 0.91391 0.88822 1.19676 0.98888 0.95059 0.95914 1.20896 0.98969 0.92952 0.97475 1.21186 0.98457 1.00361 0.94526 1.20994 0.97532 0.93555 0.99452 1.21127 1.02639 0.95998 0.97400 1.17547 0.98926 0.79060 0.96086 1.91495 1.91067 1.34218 1.94821 1.21859 0.82935 1.00458 0.90324 0.86354 1.86548 1.16820 1.34246 1.96396 1.21152 0.82313 0.83247 0.87618 1.90616 1.57391 1.38526 1.53939 1.42796 1.09909 1.52971 1.20831 1.17290 0.93861 1.13805 0.91896 1.24085 1.00502 1.02778 0.93420 1.78260 0.87735 1.22034 1.21136 1.44554 1.07294 1.28371 1.10715 1.19872 0.88961 1.31568 1.05182 0.86606 1.25650 0.98460 0.95572 0.97430 1.70221 1.23845 1.23967 1.21515 0.85819 0.80294 0.78451 0.79638 1.19656 1.20038 1.18748 1.21257 0.97053 1.11752 0.93378 0.91389 0.91706 0.90268 0.85024 0.85325 0.85198 0.84875 0.76681 0.76802 0.80864 0.91446 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 7.44 37.16 0.28 -1.19 16 2 C -0.08 -0.87 2.32 -91.77 -0.21 -1.09 16 3 H 0.09 1.13 7.13 -51.93 -0.37 0.76 16 4 C -0.09 -0.94 4.47 -104.56 -0.47 -1.41 16 5 C -0.08 -0.70 8.76 -39.59 -0.35 -1.04 16 6 C -0.13 -0.90 10.04 -39.58 -0.40 -1.30 16 7 C -0.10 -0.69 10.04 -39.59 -0.40 -1.08 16 8 C -0.15 -1.30 10.03 -39.51 -0.40 -1.70 16 9 C 0.10 1.08 7.25 -39.42 -0.29 0.80 16 10 F -0.14 -1.63 16.19 2.25 0.04 -1.59 16 11 C 0.11 1.34 2.85 -27.88 -0.08 1.26 16 12 H 0.12 1.23 7.33 -51.93 -0.38 0.85 16 13 O -0.54 -7.35 12.75 -54.68 -0.70 -8.05 16 14 C 0.47 7.98 6.68 -10.99 -0.07 7.91 16 15 O -0.53 -11.18 13.49 -13.91 -0.19 -11.37 16 16 N -0.62 -10.48 4.31 -10.00 -0.04 -10.53 16 17 C -0.06 -1.42 6.90 -83.84 -0.58 -2.00 16 18 C -0.03 -0.85 10.85 -17.04 -0.18 -1.04 16 19 N -0.26 -7.58 10.41 30.80 0.32 -7.26 16 20 N -0.14 -3.86 3.74 -11.41 -0.04 -3.91 16 21 C -0.32 -8.50 10.24 -14.81 -0.15 -8.66 16 22 H 0.12 2.71 7.84 -52.48 -0.41 2.30 16 23 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 24 N -0.77 -21.50 11.83 55.49 0.66 -20.85 16 25 Si 0.93 18.83 29.56 -169.99 -5.02 13.81 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 28 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 29 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 30 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.45 7.33 -51.93 -0.38 0.07 16 32 H 0.08 0.88 6.25 -51.93 -0.32 0.56 16 33 H 0.13 0.84 7.20 -52.49 -0.38 0.46 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 35 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.38 4.77 8.69 45.56 0.40 5.17 16 38 H 0.40 5.07 6.78 -40.82 -0.28 4.80 16 39 H 0.17 4.56 5.94 -52.49 -0.31 4.25 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 LS Contribution 351.59 15.07 5.30 5.30 Total: -1.00 -34.59 351.59 -6.95 -41.54 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -3.69 Total: 14.47 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.58 Total: -11.56 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.89 Total: -42.54 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.88 Total: -19.42 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.59 -6.95 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.240 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds