Wall clock time and date at job start Tue Mar 31 2020 18:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46973 * 2 1 4 4 C 1.50699 * 109.47337 * 240.00581 * 2 1 3 5 5 C 1.38227 * 120.00534 * 299.99592 * 4 2 1 6 6 C 1.38227 * 120.02318 * 179.97438 * 5 4 2 7 7 C 1.38264 * 120.04805 * 0.02562 * 6 5 4 8 8 C 1.38180 * 120.03063 * 0.02562 * 7 6 5 9 9 C 1.38431 * 120.01832 * 119.72004 * 4 2 1 10 10 F 1.35095 * 120.02566 * 0.02562 * 9 4 2 11 11 C 1.53002 * 109.47260 * 119.99752 * 2 1 3 12 12 H 1.08997 * 109.46581 * 61.76236 * 11 2 1 13 13 O 1.42894 * 109.46877 * 181.76087 * 11 2 1 14 14 C 1.50699 * 109.47074 * 301.76201 * 11 2 1 15 15 O 1.21299 * 120.00303 * 254.95541 * 14 11 2 16 16 N 1.34776 * 119.99925 * 74.96014 * 14 11 2 17 17 C 1.40598 * 119.99993 * 174.83150 * 16 14 11 18 18 C 1.40644 * 126.08000 * 0.04736 * 17 16 14 19 19 N 1.30912 * 108.38396 * 179.70068 * 18 17 16 20 20 N 1.40064 * 108.40698 * 0.40566 * 19 18 17 21 21 C 1.37323 * 126.06919 * 179.85463 * 20 19 18 22 22 H 1.08003 * 119.99845 * 184.82167 * 21 20 19 23 23 C 1.38986 * 120.00130 * 4.54829 * 21 20 19 24 24 N 1.31297 * 119.99931 * 355.10108 * 23 21 20 25 25 Si 1.86803 * 120.00205 * 175.10247 * 23 21 20 26 26 H 1.48498 * 109.47014 * 94.99839 * 25 23 21 27 27 H 1.48499 * 109.46850 * 214.99453 * 25 23 21 28 28 H 1.48494 * 109.46890 * 334.99520 * 25 23 21 29 29 C 1.35681 * 126.08060 * 179.97438 * 17 16 14 30 30 H 1.09001 * 109.47533 * 67.60334 * 1 2 3 31 31 H 1.08993 * 109.47079 * 187.60705 * 1 2 3 32 32 H 1.09004 * 109.47387 * 307.60892 * 1 2 3 33 33 H 1.08002 * 119.98968 * 359.95874 * 5 4 2 34 34 H 1.07996 * 119.97185 * 180.02562 * 6 5 4 35 35 H 1.08008 * 119.98744 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.01115 * 179.97438 * 8 7 6 37 37 H 0.96699 * 114.00734 * 60.00623 * 13 11 2 38 38 H 0.97001 * 120.00104 * 354.83161 * 16 14 11 39 39 H 1.08000 * 125.81012 * 359.95772 * 18 17 16 40 40 H 0.96995 * 119.99948 * 179.97438 * 24 23 21 41 41 H 1.07997 * 126.24862 * 0.07032 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 6 1.6986 -2.0336 -1.4495 6 6 2.1587 -2.6853 -2.5783 7 6 2.9537 -2.0146 -3.4892 8 6 3.2895 -0.6919 -3.2719 9 6 2.8235 -0.0361 -2.1448 10 9 3.1461 1.2588 -1.9344 11 6 2.0400 -0.7212 1.2493 12 1 1.7027 -1.7575 1.2336 13 8 3.4683 -0.6854 1.2701 14 6 1.5023 -0.0364 2.4793 15 8 2.2299 0.6653 3.1498 16 7 0.2130 -0.2037 2.8345 17 6 -0.2613 0.3452 4.0388 18 6 0.4932 1.0886 4.9641 19 7 -0.2911 1.4339 5.9538 20 7 -1.5697 0.9191 5.7052 21 6 -2.6707 1.0639 6.5130 22 1 -3.5928 0.5593 6.2647 23 6 -2.5969 1.8553 7.6531 24 7 -1.4505 2.3863 8.0106 25 14 -4.1286 2.1635 8.6771 26 1 -4.1845 1.1835 9.7914 27 1 -4.0849 3.5407 9.2308 28 1 -5.3338 2.0113 7.8230 29 6 -1.5287 0.2532 4.5144 30 1 -0.3634 0.3915 -0.9501 31 1 -0.3633 -1.0186 0.1360 32 1 -0.3634 0.6272 0.8141 33 1 1.0782 -2.5587 -0.7382 34 1 1.8971 -3.7192 -2.7487 35 1 3.3130 -2.5249 -4.3707 36 1 3.9108 -0.1684 -3.9835 37 1 3.8393 0.2075 1.2847 38 1 -0.3877 -0.7029 2.2592 39 1 1.5404 1.3362 4.8718 40 1 -1.3991 2.9389 8.8060 41 1 -2.3542 -0.2547 4.0381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865056486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:58 Heat of formation + Delta-G solvation = -44.787165 kcal Electronic energy + Delta-G solvation = -27918.307430 eV Core-core repulsion = 23713.762752 eV Total energy + Delta-G solvation = -4204.544678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.89527 -41.91322 -40.95818 -39.85224 -37.71293 -36.19916 -35.35864 -34.61611 -32.26801 -31.41631 -30.83773 -29.58974 -27.95336 -26.66870 -24.93537 -23.57598 -22.93361 -22.27479 -21.37461 -21.24845 -19.53365 -18.94531 -18.43989 -17.72377 -17.42806 -17.08661 -17.04068 -16.58907 -16.51340 -16.11906 -15.69523 -15.49794 -15.31446 -15.08018 -14.94771 -14.73967 -14.45596 -14.09064 -13.67844 -13.53257 -13.39871 -13.25978 -13.08659 -12.92063 -12.87462 -12.82800 -12.75484 -12.12162 -12.07956 -11.91066 -11.75931 -11.53293 -11.00889 -10.82654 -10.53309 -10.10543 -9.81873 -9.54230 -8.53297 -8.47434 -6.24406 0.24977 0.32741 1.18018 1.40011 1.46252 1.58428 1.84589 2.01513 2.24588 2.48027 2.70978 2.88805 3.08655 3.20079 3.33893 3.54457 3.59678 3.84193 3.95287 4.02984 4.21974 4.28980 4.38333 4.44545 4.46805 4.56552 4.60056 4.78829 4.95283 5.00512 5.02729 5.07913 5.15910 5.22531 5.29123 5.31216 5.43664 5.46746 5.54693 5.95983 6.02241 6.29397 6.41013 6.70771 6.73416 7.31661 7.47136 7.67784 8.52240 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030163 B = 0.002334 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.066548 B =11993.610011 C =12298.961231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.072 4.072 3 H 0.069 0.931 4 C -0.106 4.106 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.095 4.095 8 C -0.161 4.161 9 C 0.071 3.929 10 F -0.156 7.156 11 C 0.122 3.878 12 H 0.151 0.849 13 O -0.545 6.545 14 C 0.470 3.530 15 O -0.574 6.574 16 N -0.607 5.607 17 C -0.046 4.046 18 C -0.062 4.062 19 N -0.312 5.312 20 N -0.168 5.168 21 C -0.353 4.353 22 H 0.143 0.857 23 C -0.008 4.008 24 N -0.826 5.826 25 Si 1.019 2.981 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.242 1.242 29 C -0.077 4.077 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.143 0.857 37 H 0.387 0.613 38 H 0.421 0.579 39 H 0.163 0.837 40 H 0.276 0.724 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 -11.737 -23.700 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.091 4.091 3 H 0.088 0.912 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.141 4.141 7 C -0.113 4.113 8 C -0.180 4.180 9 C 0.052 3.948 10 F -0.135 7.135 11 C 0.059 3.941 12 H 0.168 0.832 13 O -0.351 6.351 14 C 0.257 3.743 15 O -0.454 6.454 16 N -0.255 5.255 17 C -0.152 4.152 18 C -0.237 4.237 19 N -0.144 5.144 20 N 0.063 4.937 21 C -0.484 4.484 22 H 0.160 0.840 23 C -0.219 4.219 24 N -0.454 5.454 25 Si 0.838 3.162 26 H -0.190 1.190 27 H -0.204 1.204 28 H -0.165 1.165 29 C -0.228 4.228 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.172 0.828 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.161 0.839 37 H 0.236 0.764 38 H 0.260 0.740 39 H 0.180 0.820 40 H 0.085 0.915 41 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 1.871 -11.111 -21.974 24.694 hybrid contribution -0.059 1.029 -0.136 1.040 sum 1.812 -10.082 -22.110 24.367 Atomic orbital electron populations 1.22073 0.91371 1.04509 1.03469 1.20586 0.98546 0.99020 0.90996 0.91217 1.19629 0.99698 0.95963 0.95421 1.21219 0.99042 0.92102 0.98433 1.21592 0.97297 1.01608 0.93653 1.21394 0.96734 0.92835 1.00305 1.21379 1.02722 0.96890 0.96989 1.17945 1.00475 0.78776 0.97604 1.91444 1.91430 1.35528 1.95066 1.21981 0.82138 1.01574 0.88411 0.83150 1.86523 1.17627 1.34665 1.96240 1.22166 0.81699 0.82130 0.88275 1.90606 1.58568 1.40452 1.55729 1.42719 1.10566 1.52872 1.19325 1.17354 0.93180 1.11884 0.92783 1.24117 1.00347 1.04528 0.94751 1.78155 0.89358 1.23944 1.22940 1.44850 1.06938 1.29570 1.12331 1.20632 0.89620 1.32359 1.05788 0.83982 1.26903 1.01928 0.94607 0.98500 1.70408 1.26882 1.25582 1.22533 0.84583 0.76096 0.77892 0.77664 1.18981 1.20387 1.16470 1.22035 0.98330 1.10278 0.92109 0.90692 0.88545 0.92336 0.82772 0.82417 0.82419 0.83892 0.76374 0.73958 0.82024 0.91462 0.79158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 7.44 71.98 0.54 -2.00 16 2 C -0.07 -1.45 2.32 -11.54 -0.03 -1.48 16 3 H 0.07 1.73 7.13 -2.39 -0.02 1.72 16 4 C -0.11 -1.92 4.47 -19.82 -0.09 -2.01 16 5 C -0.09 -1.15 8.76 22.26 0.20 -0.95 16 6 C -0.12 -1.24 10.04 22.27 0.22 -1.02 16 7 C -0.09 -1.02 10.04 22.26 0.22 -0.80 16 8 C -0.16 -2.48 10.03 22.31 0.22 -2.26 16 9 C 0.07 1.45 7.25 22.37 0.16 1.61 16 10 F -0.16 -3.85 16.19 44.97 0.73 -3.12 16 11 C 0.12 2.83 2.85 29.85 0.09 2.91 16 12 H 0.15 2.55 7.33 -2.39 -0.02 2.54 16 13 O -0.55 -14.68 12.75 -130.39 -1.66 -16.34 16 14 C 0.47 15.73 6.68 87.66 0.59 16.32 16 15 O -0.57 -25.20 13.49 15.51 0.21 -24.99 16 16 N -0.61 -19.66 4.31 -303.93 -1.31 -20.97 16 17 C -0.05 -2.06 6.90 37.73 0.26 -1.80 16 18 C -0.06 -3.42 10.85 85.42 0.93 -2.50 16 19 N -0.31 -18.95 10.41 -56.47 -0.59 -19.54 16 20 N -0.17 -9.26 3.74 -190.01 -0.71 -9.97 16 21 C -0.35 -18.53 10.24 84.01 0.86 -17.67 16 22 H 0.14 6.40 7.84 -2.91 -0.02 6.37 16 23 C -0.01 -0.41 5.50 84.95 0.47 0.05 16 24 N -0.83 -48.07 11.83 21.66 0.26 -47.81 16 25 Si 1.02 38.48 29.56 68.60 2.03 40.51 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 27 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 28 H -0.24 -8.19 7.11 99.48 0.71 -7.48 16 29 C -0.08 -3.48 11.49 83.38 0.96 -2.52 16 30 H 0.07 1.13 8.13 -2.39 -0.02 1.12 16 31 H 0.10 0.93 7.33 -2.39 -0.02 0.91 16 32 H 0.06 1.20 6.25 -2.38 -0.01 1.19 16 33 H 0.15 1.18 7.20 -2.91 -0.02 1.16 16 34 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.39 9.95 8.69 -74.06 -0.64 9.31 16 38 H 0.42 9.42 6.78 -92.71 -0.63 8.79 16 39 H 0.16 9.10 5.94 -2.91 -0.02 9.09 16 40 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.19 6.55 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -81.09 351.59 4.38 -76.71 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.16 Total: 39.61 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: 5.59 Total: -14.10 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -2.35 Total: -98.29 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.45 Total: -41.32 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.73 Total: -3.12 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -81.09 4.38 -76.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865056486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.925 kcal (2) G-P(sol) polarization free energy of solvation -81.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds