Wall clock time and date at job start Tue Mar 31 2020 18:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47123 * 2 1 4 4 N 1.46501 * 109.47293 * 239.99587 * 2 1 3 5 5 C 1.34776 * 119.99860 * 84.72493 * 4 2 1 6 6 S 1.71198 * 119.99940 * 0.27322 * 5 4 2 7 7 N 1.34777 * 120.00236 * 180.27639 * 5 4 2 8 8 N 1.40097 * 119.99813 * 0.02562 * 7 5 4 9 9 C 1.34782 * 120.00191 * 179.97438 * 8 7 5 10 10 O 1.21612 * 119.99427 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00072 * 179.97438 * 9 8 7 12 12 C 1.39222 * 120.28352 * 355.34693 * 11 9 8 13 13 C 1.38225 * 120.09307 * 180.02562 * 12 11 9 14 14 C 1.38821 * 120.67425 * 359.97438 * 13 12 11 15 15 C 1.37599 * 120.57108 * 0.02575 * 14 13 12 16 16 C 1.40706 * 119.88262 * 359.66954 * 15 14 13 17 17 C 1.40891 * 120.33058 * 180.30088 * 16 15 14 18 18 H 1.08001 * 119.99965 * 215.84384 * 17 16 15 19 19 C 1.40274 * 119.99952 * 35.84482 * 17 16 15 20 20 N 1.30626 * 119.99658 * 8.97224 * 19 17 16 21 21 Si 1.86797 * 119.99870 * 188.97352 * 19 17 16 22 22 H 1.48503 * 109.47124 * 90.00243 * 21 19 17 23 23 H 1.48501 * 109.47165 * 209.99699 * 21 19 17 24 24 H 1.48499 * 109.47371 * 329.99877 * 21 19 17 25 25 C 1.53001 * 109.47029 * 120.00090 * 2 1 3 26 26 C 1.52999 * 117.49979 * 8.61867 * 25 2 1 27 27 C 1.53007 * 60.00248 * 252.51460 * 26 25 2 28 28 H 1.08999 * 109.46679 * 60.00592 * 1 2 3 29 29 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47204 * 300.00391 * 1 2 3 31 31 H 0.97001 * 120.00061 * 265.00645 * 4 2 1 32 32 H 0.96997 * 120.00292 * 179.97438 * 7 5 4 33 33 H 0.97003 * 120.00389 * 359.97438 * 8 7 5 34 34 H 1.08003 * 119.95571 * 359.97438 * 12 11 9 35 35 H 1.07996 * 119.66151 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.71644 * 179.97438 * 14 13 12 37 37 H 1.08007 * 120.05869 * 179.97438 * 15 14 13 38 38 H 0.97001 * 119.99900 * 180.02562 * 20 19 17 39 39 H 1.08995 * 115.55267 * 154.33093 * 25 2 1 40 40 H 1.08999 * 117.49828 * 0.02562 * 26 25 2 41 41 H 1.08997 * 117.49784 * 145.02654 * 26 25 2 42 42 H 1.08994 * 117.49833 * 252.50943 * 27 26 25 43 43 H 1.08996 * 117.51681 * 107.48152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1419 -0.0198 -2.3585 6 16 1.7347 1.6413 -2.4354 7 7 2.5859 -0.6565 -3.4603 8 7 2.9186 -2.0159 -3.3974 9 6 3.3621 -2.6529 -4.4993 10 8 3.4730 -2.0475 -5.5482 11 6 3.7127 -4.0833 -4.4330 12 6 3.6806 -4.7583 -3.2158 13 6 4.0106 -6.0994 -3.1581 14 6 4.3762 -6.7888 -4.3062 15 6 4.4172 -6.1488 -5.5236 16 6 4.0797 -4.7856 -5.6107 17 6 4.1123 -4.1226 -6.8535 18 1 4.4276 -3.0910 -6.9070 19 6 3.7353 -4.8023 -8.0212 20 7 3.1896 -5.9863 -7.9403 21 14 4.0136 -4.0142 -9.6917 22 1 5.3557 -4.3945 -10.2010 23 1 2.9727 -4.4845 -10.6406 24 1 3.9339 -2.5370 -9.5617 25 6 2.0400 -0.7213 1.2492 26 6 1.0104 -1.4541 2.1117 27 6 1.6357 -0.1494 2.6096 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2491 -1.6319 -1.1525 32 1 2.6744 -0.1737 -4.2969 33 1 2.8297 -2.4989 -2.5609 34 1 3.3983 -4.2333 -2.3152 35 1 3.9838 -6.6160 -2.2101 36 1 4.6315 -7.8364 -4.2432 37 1 4.7032 -6.6932 -6.4116 38 1 2.9292 -6.4565 -8.7477 39 1 3.0324 -1.1641 1.1643 40 1 -0.0302 -1.4227 1.7889 41 1 1.3253 -2.3793 2.5942 42 1 2.3619 -0.2164 3.4197 43 1 1.0068 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869219162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:19 Heat of formation + Delta-G solvation = 65.212659 kcal Electronic energy + Delta-G solvation = -25662.700747 eV Core-core repulsion = 22029.139196 eV Total energy + Delta-G solvation = -3633.561551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.26109 -39.18001 -37.88061 -36.81109 -34.93818 -33.96286 -32.09517 -30.28022 -29.97299 -29.26616 -25.81269 -25.33246 -23.70188 -22.77948 -22.21448 -21.29225 -21.16287 -19.96777 -18.95456 -17.95326 -17.58831 -16.65132 -15.98460 -15.84435 -15.46100 -15.40488 -14.93170 -14.70875 -14.44538 -14.30789 -13.90882 -13.43992 -13.20679 -12.93402 -12.61904 -12.37123 -12.27103 -11.86810 -11.72653 -11.36906 -11.31405 -11.30153 -11.20294 -10.90466 -10.85284 -10.77908 -10.72356 -10.39443 -10.22127 -9.96091 -9.48965 -8.91316 -8.65144 -7.92512 -7.65840 -7.59529 -7.53726 -7.04432 -4.67075 1.33890 1.50160 2.01475 2.29103 2.58540 2.59456 2.99421 3.03516 3.10344 3.44965 3.72425 3.81685 4.23390 4.42639 4.46335 4.53646 4.62151 4.73249 5.05716 5.16491 5.31286 5.31656 5.42524 5.49811 5.52415 5.61591 5.66902 5.74369 5.77451 6.02553 6.08215 6.10826 6.27160 6.33961 6.63854 6.79394 6.85237 6.94871 7.16514 7.26611 7.34693 7.50470 7.66464 7.80870 7.91059 8.38905 8.54251 8.60515 8.85560 9.90522 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.003097 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.381066 B = 9038.889295 C =10639.126509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.176 3.824 3 H 0.120 0.880 4 N -0.683 5.683 5 C 0.567 3.433 6 S -0.636 6.636 7 N -0.456 5.456 8 N -0.566 5.566 9 C 0.569 3.431 10 O -0.522 6.522 11 C -0.261 4.261 12 C -0.057 4.057 13 C -0.237 4.237 14 C -0.094 4.094 15 C -0.138 4.138 16 C 0.150 3.850 17 C -0.417 4.417 18 H 0.112 0.888 19 C 0.069 3.931 20 N -0.784 5.784 21 Si 0.918 3.082 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.255 1.255 25 C -0.174 4.174 26 C -0.183 4.183 27 C -0.163 4.163 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.394 0.606 32 H 0.457 0.543 33 H 0.411 0.589 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.286 0.714 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 2.570 14.999 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.072 3.928 3 H 0.138 0.862 4 N -0.316 5.316 5 C 0.203 3.797 6 S -0.512 6.512 7 N -0.181 5.181 8 N -0.320 5.320 9 C 0.365 3.635 10 O -0.397 6.397 11 C -0.268 4.268 12 C -0.076 4.076 13 C -0.256 4.256 14 C -0.113 4.113 15 C -0.157 4.157 16 C 0.145 3.855 17 C -0.444 4.444 18 H 0.130 0.870 19 C -0.151 4.151 20 N -0.408 5.408 21 Si 0.741 3.259 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.179 1.179 25 C -0.193 4.193 26 C -0.219 4.219 27 C -0.200 4.200 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.231 0.769 32 H 0.307 0.693 33 H 0.253 0.747 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.779 3.733 14.092 14.841 hybrid contribution 0.292 -1.363 -0.503 1.482 sum -2.487 2.370 13.589 14.016 Atomic orbital electron populations 1.22304 0.94192 1.02248 1.03868 1.20866 0.94675 0.97875 0.79421 0.86215 1.44973 1.65388 1.12998 1.08223 1.22314 0.82171 0.94148 0.81098 1.93510 1.72565 0.93064 1.92089 1.44685 1.60744 1.00489 1.12133 1.46015 1.72407 0.98179 1.15446 1.18827 0.75993 0.87623 0.81054 1.90730 1.53697 1.67232 1.28017 1.19006 1.21255 0.90583 0.95962 1.20556 0.98028 0.94597 0.94452 1.20297 1.13501 0.94512 0.97305 1.20844 0.99152 0.97901 0.93357 1.21379 1.02819 0.95342 0.96208 1.17415 0.85782 0.91097 0.91209 1.20387 1.33627 1.00419 0.90012 0.87001 1.26196 0.92527 0.94152 1.02218 1.69690 1.26982 1.11982 1.32109 0.86116 0.78955 0.81224 0.79566 1.19047 1.20094 1.17865 1.22547 1.00116 1.04968 0.91620 1.23235 0.99109 0.96255 1.03336 1.22947 1.03563 0.97861 0.95677 0.90402 0.92317 0.91050 0.76941 0.69294 0.74678 0.89702 0.88699 0.88662 0.86332 0.90282 0.87221 0.87673 0.88694 0.88434 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.03 37.16 0.30 -1.21 16 2 C 0.18 1.65 2.73 -67.93 -0.19 1.47 16 3 H 0.12 1.35 6.82 -51.93 -0.35 1.00 16 4 N -0.68 -7.28 5.04 -55.52 -0.28 -7.56 16 5 C 0.57 7.98 7.94 -86.92 -0.69 7.29 16 6 S -0.64 -10.83 28.12 -107.50 -3.02 -13.85 16 7 N -0.46 -6.94 6.26 29.96 0.19 -6.75 16 8 N -0.57 -8.81 6.21 30.44 0.19 -8.63 16 9 C 0.57 11.66 7.84 -12.52 -0.10 11.56 16 10 O -0.52 -12.33 13.36 5.27 0.07 -12.26 16 11 C -0.26 -5.65 5.92 -104.37 -0.62 -6.26 16 12 C -0.06 -1.05 9.52 -39.22 -0.37 -1.43 16 13 C -0.24 -4.40 10.03 -39.37 -0.39 -4.79 16 14 C -0.09 -1.88 10.01 -39.60 -0.40 -2.28 16 15 C -0.14 -3.18 8.62 -38.88 -0.34 -3.52 16 16 C 0.15 3.64 5.48 -106.54 -0.58 3.06 16 17 C -0.42 -10.55 7.78 -37.81 -0.29 -10.85 16 18 H 0.11 2.94 5.73 -52.49 -0.30 2.64 16 19 C 0.07 1.65 5.25 -17.30 -0.09 1.56 16 20 N -0.78 -18.84 11.25 55.56 0.63 -18.22 16 21 Si 0.92 18.43 29.57 -169.99 -5.03 13.40 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.17 -1.28 5.87 -90.61 -0.53 -1.81 16 26 C -0.18 -1.16 9.57 -26.73 -0.26 -1.41 16 27 C -0.16 -1.02 9.90 -26.72 -0.26 -1.29 16 28 H 0.08 0.89 7.47 -51.93 -0.39 0.51 16 29 H 0.06 0.49 6.97 -51.92 -0.36 0.13 16 30 H 0.07 0.53 7.07 -51.93 -0.37 0.16 16 31 H 0.39 3.55 6.52 -40.82 -0.27 3.29 16 32 H 0.46 7.55 7.98 -182.60 -1.46 6.10 16 33 H 0.41 5.15 4.75 -182.60 -0.87 4.28 16 34 H 0.08 1.19 6.42 -52.48 -0.34 0.86 16 35 H 0.09 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.12 2.80 6.72 -52.48 -0.35 2.45 16 38 H 0.29 6.25 8.29 -40.82 -0.34 5.92 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.11 0.65 5.85 -51.93 -0.30 0.35 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.60 7.61 -51.93 -0.40 0.20 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -28.55 364.39 -13.58 -42.13 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -7.00 Total: 16.15 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -4.82 Total: -9.91 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.72 Total: -41.15 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -3.02 Total: -13.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.55 -13.58 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869219162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.343 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds