Wall clock time and date at job start Tue Mar 31 2020 18:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47123 * 2 1 4 4 N 1.46501 * 109.47293 * 239.99587 * 2 1 3 5 5 C 1.34776 * 119.99860 * 84.72493 * 4 2 1 6 6 S 1.71198 * 119.99940 * 0.27322 * 5 4 2 7 7 N 1.34777 * 120.00236 * 180.27639 * 5 4 2 8 8 N 1.40097 * 119.99813 * 0.02562 * 7 5 4 9 9 C 1.34782 * 120.00191 * 179.97438 * 8 7 5 10 10 O 1.21612 * 119.99427 * 359.97438 * 9 8 7 11 11 C 1.47428 * 120.00072 * 179.97438 * 9 8 7 12 12 C 1.39222 * 120.28352 * 355.34693 * 11 9 8 13 13 C 1.38225 * 120.09307 * 180.02562 * 12 11 9 14 14 C 1.38821 * 120.67425 * 359.97438 * 13 12 11 15 15 C 1.37599 * 120.57108 * 0.02575 * 14 13 12 16 16 C 1.40706 * 119.88262 * 359.66954 * 15 14 13 17 17 C 1.40891 * 120.33058 * 180.30088 * 16 15 14 18 18 H 1.08001 * 119.99965 * 215.84384 * 17 16 15 19 19 C 1.40274 * 119.99952 * 35.84482 * 17 16 15 20 20 N 1.30626 * 119.99658 * 8.97224 * 19 17 16 21 21 Si 1.86797 * 119.99870 * 188.97352 * 19 17 16 22 22 H 1.48503 * 109.47124 * 90.00243 * 21 19 17 23 23 H 1.48501 * 109.47165 * 209.99699 * 21 19 17 24 24 H 1.48499 * 109.47371 * 329.99877 * 21 19 17 25 25 C 1.53001 * 109.47029 * 120.00090 * 2 1 3 26 26 C 1.52999 * 117.49979 * 8.61867 * 25 2 1 27 27 C 1.53007 * 60.00248 * 252.51460 * 26 25 2 28 28 H 1.08999 * 109.46679 * 60.00592 * 1 2 3 29 29 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47204 * 300.00391 * 1 2 3 31 31 H 0.97001 * 120.00061 * 265.00645 * 4 2 1 32 32 H 0.96997 * 120.00292 * 179.97438 * 7 5 4 33 33 H 0.97003 * 120.00389 * 359.97438 * 8 7 5 34 34 H 1.08003 * 119.95571 * 359.97438 * 12 11 9 35 35 H 1.07996 * 119.66151 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.71644 * 179.97438 * 14 13 12 37 37 H 1.08007 * 120.05869 * 179.97438 * 15 14 13 38 38 H 0.97001 * 119.99900 * 180.02562 * 20 19 17 39 39 H 1.08995 * 115.55267 * 154.33093 * 25 2 1 40 40 H 1.08999 * 117.49828 * 0.02562 * 26 25 2 41 41 H 1.08997 * 117.49784 * 145.02654 * 26 25 2 42 42 H 1.08994 * 117.49833 * 252.50943 * 27 26 25 43 43 H 1.08996 * 117.51681 * 107.48152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1419 -0.0198 -2.3585 6 16 1.7347 1.6413 -2.4354 7 7 2.5859 -0.6565 -3.4603 8 7 2.9186 -2.0159 -3.3974 9 6 3.3621 -2.6529 -4.4993 10 8 3.4730 -2.0475 -5.5482 11 6 3.7127 -4.0833 -4.4330 12 6 3.6806 -4.7583 -3.2158 13 6 4.0106 -6.0994 -3.1581 14 6 4.3762 -6.7888 -4.3062 15 6 4.4172 -6.1488 -5.5236 16 6 4.0797 -4.7856 -5.6107 17 6 4.1123 -4.1226 -6.8535 18 1 4.4276 -3.0910 -6.9070 19 6 3.7353 -4.8023 -8.0212 20 7 3.1896 -5.9863 -7.9403 21 14 4.0136 -4.0142 -9.6917 22 1 5.3557 -4.3945 -10.2010 23 1 2.9727 -4.4845 -10.6406 24 1 3.9339 -2.5370 -9.5617 25 6 2.0400 -0.7213 1.2492 26 6 1.0104 -1.4541 2.1117 27 6 1.6357 -0.1494 2.6096 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 2.2491 -1.6319 -1.1525 32 1 2.6744 -0.1737 -4.2969 33 1 2.8297 -2.4989 -2.5609 34 1 3.3983 -4.2333 -2.3152 35 1 3.9838 -6.6160 -2.2101 36 1 4.6315 -7.8364 -4.2432 37 1 4.7032 -6.6932 -6.4116 38 1 2.9292 -6.4565 -8.7477 39 1 3.0324 -1.1641 1.1643 40 1 -0.0302 -1.4227 1.7889 41 1 1.3253 -2.3793 2.5942 42 1 2.3619 -0.2164 3.4197 43 1 1.0068 0.7407 2.6146 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869219162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:18 Heat of formation + Delta-G solvation = 50.020739 kcal Electronic energy + Delta-G solvation = -25663.359519 eV Core-core repulsion = 22029.139196 eV Total energy + Delta-G solvation = -3634.220323 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58960 -40.31309 -39.09948 -38.22194 -36.09509 -35.59092 -33.48419 -31.83660 -31.26214 -30.47588 -27.45095 -26.22120 -25.02159 -23.74824 -23.13770 -22.76559 -22.45504 -21.12082 -20.12953 -19.29223 -19.13243 -17.76958 -17.30222 -17.05230 -16.94437 -16.56613 -16.04119 -15.99478 -15.82037 -15.53864 -15.07425 -14.92959 -14.55617 -14.22988 -14.15206 -13.55327 -13.13475 -12.99413 -12.95165 -12.89992 -12.60138 -12.49490 -12.41091 -12.29867 -12.02912 -11.93355 -11.81229 -11.56705 -11.30436 -11.19121 -10.95207 -10.59507 -9.88123 -9.51103 -9.30524 -8.97854 -8.89591 -8.75207 -6.45714 0.09626 0.16995 0.42300 0.97165 1.05398 1.33696 1.43719 1.48895 1.55258 2.10163 2.17476 2.71786 2.90525 3.22450 3.59668 3.62334 3.92795 3.97607 4.08747 4.14624 4.24382 4.33040 4.44786 4.54315 4.71454 4.76143 4.81245 4.87642 4.97875 5.02564 5.05566 5.15124 5.19548 5.24926 5.31332 5.32660 5.39822 5.52055 5.65965 5.75420 5.98361 6.03237 6.05717 6.26584 6.31942 6.64392 6.80771 6.88449 7.28165 8.21899 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.003097 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.381066 B = 9038.889295 C =10639.126509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.101 0.899 4 N -0.660 5.660 5 C 0.584 3.416 6 S -0.688 6.688 7 N -0.462 5.462 8 N -0.542 5.542 9 C 0.570 3.430 10 O -0.559 6.559 11 C -0.273 4.273 12 C -0.052 4.052 13 C -0.227 4.227 14 C -0.088 4.088 15 C -0.171 4.171 16 C 0.122 3.878 17 C -0.461 4.461 18 H 0.089 0.911 19 C 0.036 3.964 20 N -0.815 5.815 21 Si 0.973 3.027 22 H -0.255 1.255 23 H -0.265 1.265 24 H -0.272 1.272 25 C -0.180 4.180 26 C -0.174 4.174 27 C -0.161 4.161 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.407 0.593 32 H 0.451 0.549 33 H 0.429 0.571 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.291 0.709 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 1.362 18.530 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.071 3.929 3 H 0.119 0.881 4 N -0.291 5.291 5 C 0.218 3.782 6 S -0.565 6.565 7 N -0.186 5.186 8 N -0.297 5.297 9 C 0.365 3.635 10 O -0.436 6.436 11 C -0.280 4.280 12 C -0.070 4.070 13 C -0.246 4.246 14 C -0.106 4.106 15 C -0.190 4.190 16 C 0.118 3.882 17 C -0.490 4.490 18 H 0.107 0.893 19 C -0.181 4.181 20 N -0.441 5.441 21 Si 0.795 3.205 22 H -0.179 1.179 23 H -0.189 1.189 24 H -0.197 1.197 25 C -0.199 4.199 26 C -0.211 4.211 27 C -0.198 4.198 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.300 0.700 33 H 0.274 0.726 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.186 2.491 17.724 18.180 hybrid contribution 0.389 -0.990 -1.247 1.639 sum -2.797 1.501 16.477 16.780 Atomic orbital electron populations 1.22258 0.93617 1.02815 1.03410 1.20963 0.95043 0.97234 0.79645 0.88112 1.45078 1.63220 1.13479 1.07358 1.21929 0.81598 0.93101 0.81587 1.93649 1.74474 0.95719 1.92627 1.44634 1.61635 1.00033 1.12343 1.45425 1.70962 0.98359 1.14920 1.18740 0.75778 0.87576 0.81406 1.90726 1.55053 1.67982 1.29883 1.19319 1.20723 0.91270 0.96645 1.21039 0.96266 0.94886 0.94853 1.20838 1.10827 0.94608 0.98304 1.21238 0.97343 0.99278 0.92782 1.21300 1.05360 0.95308 0.97074 1.17768 0.86172 0.92180 0.92053 1.20313 1.37088 0.99823 0.91735 0.89282 1.26748 0.92126 0.94645 1.04537 1.69709 1.28551 1.12929 1.32870 0.85315 0.79543 0.79126 0.76512 1.17921 1.18893 1.19708 1.22442 1.00710 1.05889 0.90847 1.23301 0.98834 0.96623 1.02349 1.23051 1.03656 0.98093 0.95006 0.93105 0.91139 0.89334 0.75398 0.70035 0.72588 0.84569 0.84399 0.86042 0.88299 0.89811 0.86676 0.87443 0.87681 0.87468 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.03 71.98 0.58 -2.01 16 2 C 0.17 2.89 2.73 44.99 0.12 3.02 16 3 H 0.10 2.16 6.82 -2.39 -0.02 2.14 16 4 N -0.66 -12.38 5.04 -329.56 -1.66 -14.04 16 5 C 0.58 15.72 7.94 179.05 1.42 17.14 16 6 S -0.69 -23.50 28.12 -56.49 -1.59 -25.09 16 7 N -0.46 -13.64 6.26 -59.12 -0.37 -14.01 16 8 N -0.54 -15.81 6.21 -175.87 -1.09 -16.90 16 9 C 0.57 23.17 7.84 86.66 0.68 23.85 16 10 O -0.56 -27.33 13.36 -4.07 -0.05 -27.39 16 11 C -0.27 -11.55 5.92 -19.70 -0.12 -11.66 16 12 C -0.05 -1.69 9.52 22.50 0.21 -1.48 16 13 C -0.23 -7.37 10.03 22.41 0.22 -7.15 16 14 C -0.09 -3.33 10.01 22.26 0.22 -3.10 16 15 C -0.17 -7.98 8.62 22.72 0.20 -7.78 16 16 C 0.12 6.11 5.48 -21.11 -0.12 5.99 16 17 C -0.46 -24.65 7.78 23.41 0.18 -24.47 16 18 H 0.09 5.03 5.73 -2.91 -0.02 5.01 16 19 C 0.04 1.79 5.25 85.37 0.45 2.24 16 20 N -0.81 -40.90 11.25 21.88 0.25 -40.65 16 21 Si 0.97 39.69 29.57 68.60 2.03 41.72 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 C -0.18 -2.04 5.87 -10.79 -0.06 -2.11 16 26 C -0.17 -1.53 9.57 30.60 0.29 -1.24 16 27 C -0.16 -1.50 9.90 30.60 0.30 -1.19 16 28 H 0.05 1.12 7.47 -2.39 -0.02 1.10 16 29 H 0.07 0.96 6.97 -2.38 -0.02 0.94 16 30 H 0.09 1.11 7.07 -2.39 -0.02 1.09 16 31 H 0.41 5.73 6.52 -92.71 -0.60 5.12 16 32 H 0.45 15.07 7.98 -213.33 -1.70 13.37 16 33 H 0.43 9.06 4.75 -213.32 -1.01 8.04 16 34 H 0.14 2.96 6.42 -2.91 -0.02 2.94 16 35 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.12 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.10 4.90 6.72 -2.91 -0.02 4.88 16 38 H 0.29 13.23 8.29 -92.71 -0.77 12.47 16 39 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 0.92 5.85 -2.39 -0.01 0.90 16 41 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.93 7.61 -2.39 -0.02 0.91 16 Total: -1.00 -66.81 364.39 -0.13 -66.95 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -2.23 Total: 39.38 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.59 Total: -9.95 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -2.88 Total: -85.61 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: -23.50 SS G_CDS: -1.59 Total: -25.09 kcal Total: -66.81 -0.13 -66.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869219162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.966 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds