Wall clock time and date at job start Tue Mar 31 2020 18:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.47173 * 2 1 4 4 N 1.46504 * 109.47154 * 120.00518 * 2 1 3 5 5 C 1.34773 * 119.99694 * 274.99988 * 4 2 1 6 6 S 1.71203 * 120.00134 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00212 * 180.02562 * 5 4 2 8 8 N 1.40104 * 119.99803 * 359.97438 * 7 5 4 9 9 C 1.34772 * 120.00379 * 180.02562 * 8 7 5 10 10 O 1.21612 * 120.00021 * 0.02562 * 9 8 7 11 11 C 1.47428 * 120.00459 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28169 * 357.35381 * 11 9 8 13 13 C 1.38223 * 120.09211 * 180.30292 * 12 11 9 14 14 C 1.38821 * 120.67815 * 359.70092 * 13 12 11 15 15 C 1.37607 * 120.56726 * 0.02562 * 14 13 12 16 16 C 1.40697 * 119.88060 * 0.02562 * 15 14 13 17 17 C 1.40898 * 120.32675 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00026 * 145.90944 * 17 16 15 19 19 C 1.40272 * 119.99546 * 325.90728 * 17 16 15 20 20 N 1.30628 * 120.00483 * 341.10839 * 19 17 16 21 21 Si 1.86806 * 119.99712 * 161.11635 * 19 17 16 22 22 H 1.48502 * 109.47037 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.46805 * 299.99446 * 21 19 17 24 24 H 1.48492 * 109.47210 * 59.99541 * 21 19 17 25 25 C 1.53004 * 109.46810 * 239.99968 * 2 1 3 26 26 C 1.53002 * 117.49713 * 128.62325 * 25 2 1 27 27 C 1.53003 * 117.49510 * 60.00153 * 25 2 1 28 28 H 1.08992 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46614 * 299.99597 * 1 2 3 30 30 H 1.09003 * 109.47019 * 59.99394 * 1 2 3 31 31 H 0.96995 * 120.00230 * 94.99151 * 4 2 1 32 32 H 0.96998 * 120.00682 * 179.97438 * 7 5 4 33 33 H 0.97003 * 120.00008 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.95562 * 0.02562 * 12 11 9 35 35 H 1.08007 * 119.66166 * 179.71756 * 13 12 11 36 36 H 1.07993 * 119.71958 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.05609 * 180.02562 * 15 14 13 38 38 H 0.97002 * 119.99423 * 354.71963 * 20 19 17 39 39 H 1.08999 * 115.55400 * 274.33311 * 25 2 1 40 40 H 1.09002 * 117.49729 * 0.02562 * 26 25 2 41 41 H 1.08994 * 117.49742 * 145.01877 * 26 25 2 42 42 H 1.08996 * 117.49563 * 214.97441 * 27 25 2 43 43 H 1.08993 * 117.50027 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 16 1.7406 1.6428 2.4339 7 7 2.5969 -0.6537 3.4574 8 7 2.9301 -2.0130 3.3945 9 6 3.3793 -2.6485 4.4948 10 8 3.4951 -2.0420 5.5425 11 6 3.7305 -4.0788 4.4284 12 6 3.5485 -4.7922 3.2468 13 6 3.8733 -6.1346 3.1908 14 6 4.3884 -6.7858 4.3033 15 6 4.5847 -6.1059 5.4835 16 6 4.2613 -4.7392 5.5673 17 6 4.4580 -4.0341 6.7712 18 1 4.7498 -2.9946 6.7466 19 6 4.2747 -4.6823 8.0015 20 7 3.5834 -5.7891 8.0601 21 14 5.0190 -3.9625 9.5564 22 1 4.6834 -4.8307 10.7136 23 1 6.4945 -3.8843 9.4085 24 1 4.4713 -2.6010 9.7830 25 6 2.0400 -0.7213 -1.2493 26 6 3.0742 0.0051 -2.1117 27 6 1.6357 -0.1494 -2.6096 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6319 1.1526 32 1 2.6899 -0.1698 4.2929 33 1 2.8375 -2.4969 2.5588 34 1 3.1489 -4.2973 2.3741 35 1 3.7250 -6.6825 2.2719 36 1 4.6371 -7.8349 4.2422 37 1 4.9863 -6.6206 6.3439 38 1 3.1329 -6.1220 7.2682 39 1 2.1267 -1.8045 -1.1644 40 1 3.3915 0.9967 -1.7889 41 1 3.8415 -0.6002 -2.5942 42 1 1.4568 -0.8565 -3.4196 43 1 1.0068 0.7408 -2.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869219163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:23 Heat of formation + Delta-G solvation = 56.409884 kcal Electronic energy + Delta-G solvation = -25657.339741 eV Core-core repulsion = 22023.396472 eV Total energy + Delta-G solvation = -3633.943268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.28837 -39.13652 -37.93320 -36.92376 -35.04799 -34.23422 -32.20309 -30.46095 -29.85349 -29.35581 -25.67586 -25.00325 -23.64192 -22.66202 -22.32516 -21.53512 -21.25457 -20.34643 -19.11263 -18.18303 -18.02087 -16.73359 -16.05232 -15.86292 -15.25839 -15.01082 -14.68800 -14.61866 -14.46736 -14.33987 -14.13755 -13.86466 -13.30022 -13.02362 -12.65490 -12.55954 -12.34857 -12.13037 -11.76499 -11.41651 -11.30853 -11.18444 -11.15813 -11.03419 -10.91248 -10.74638 -10.51277 -10.46668 -10.27269 -9.94531 -9.31690 -9.04283 -8.68930 -8.12880 -7.91082 -7.66155 -7.58389 -7.41069 -4.76316 1.29921 1.45571 1.88694 2.24610 2.48508 2.56293 3.08954 3.16423 3.28981 3.41305 3.60701 3.87066 4.17051 4.35716 4.42854 4.51578 4.59806 4.78173 5.08661 5.12952 5.15056 5.28236 5.33371 5.40698 5.48950 5.53986 5.63414 5.73322 5.76662 5.87440 6.02610 6.08997 6.17243 6.29382 6.41706 6.66530 6.74622 6.97614 7.14728 7.22130 7.32854 7.42409 7.54870 7.65249 7.84584 7.93045 8.40184 8.55083 8.76355 9.78335 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.003031 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.765432 B = 9235.639266 C =10678.580661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.175 3.825 3 H 0.118 0.882 4 N -0.682 5.682 5 C 0.567 3.433 6 S -0.635 6.635 7 N -0.456 5.456 8 N -0.566 5.566 9 C 0.568 3.432 10 O -0.520 6.520 11 C -0.266 4.266 12 C -0.043 4.043 13 C -0.252 4.252 14 C -0.073 4.073 15 C -0.192 4.192 16 C 0.121 3.879 17 C -0.457 4.457 18 H 0.108 0.892 19 C 0.031 3.969 20 N -0.781 5.781 21 Si 1.070 2.930 22 H -0.272 1.272 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.173 4.173 26 C -0.175 4.175 27 C -0.163 4.163 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.392 0.608 32 H 0.457 0.543 33 H 0.411 0.589 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.300 0.700 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 3.278 -15.680 16.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.135 0.865 4 N -0.315 5.315 5 C 0.203 3.797 6 S -0.511 6.511 7 N -0.181 5.181 8 N -0.321 5.321 9 C 0.364 3.636 10 O -0.395 6.395 11 C -0.273 4.273 12 C -0.062 4.062 13 C -0.271 4.271 14 C -0.092 4.092 15 C -0.211 4.211 16 C 0.116 3.884 17 C -0.483 4.483 18 H 0.126 0.874 19 C -0.192 4.192 20 N -0.403 5.403 21 Si 0.892 3.108 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.192 4.192 26 C -0.212 4.212 27 C -0.201 4.201 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.229 0.771 32 H 0.307 0.693 33 H 0.252 0.748 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.368 4.306 -13.294 14.173 hybrid contribution 0.026 -1.398 -2.022 2.458 sum -2.342 2.908 -15.316 15.764 Atomic orbital electron populations 1.22152 0.93793 1.02256 1.03810 1.20959 0.94873 0.97718 0.79371 0.86472 1.44974 1.65332 1.12880 1.08330 1.22316 0.82141 0.94168 0.81074 1.93513 1.72545 0.92962 1.92042 1.44688 1.60647 1.00444 1.12336 1.46002 1.72257 0.98285 1.15506 1.18775 0.76042 0.87635 0.81174 1.90752 1.53468 1.67199 1.28096 1.18918 1.19566 0.90663 0.98157 1.20620 0.96531 0.94470 0.94541 1.20257 1.13707 0.94665 0.98498 1.20791 0.97188 0.97879 0.93360 1.21300 1.06797 0.95419 0.97571 1.17419 0.87817 0.91124 0.92077 1.21305 1.34594 1.01440 0.90974 0.87433 1.27376 0.94334 0.93340 1.04154 1.70413 1.17640 1.16413 1.35833 0.83551 0.77018 0.76763 0.73456 1.19675 1.19719 1.19511 1.22468 1.05563 0.99415 0.91708 1.23101 0.92574 1.02310 1.03181 1.22942 0.98279 1.03249 0.95585 0.92713 0.90515 0.91004 0.77065 0.69279 0.74756 0.89589 0.88500 0.88441 0.87131 0.88608 0.87483 0.88175 0.88578 0.88391 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.27 37.16 0.34 -1.12 16 2 C 0.17 1.64 2.57 -67.92 -0.17 1.46 16 3 H 0.12 1.31 6.57 -51.93 -0.34 0.97 16 4 N -0.68 -7.24 5.04 -55.52 -0.28 -7.52 16 5 C 0.57 7.96 7.94 -86.92 -0.69 7.27 16 6 S -0.63 -10.75 28.14 -107.50 -3.02 -13.78 16 7 N -0.46 -6.93 6.26 29.96 0.19 -6.74 16 8 N -0.57 -8.78 6.21 30.43 0.19 -8.59 16 9 C 0.57 11.63 7.85 -12.52 -0.10 11.54 16 10 O -0.52 -12.36 13.38 5.27 0.07 -12.29 16 11 C -0.27 -5.71 5.92 -104.37 -0.62 -6.33 16 12 C -0.04 -0.77 9.53 -39.22 -0.37 -1.15 16 13 C -0.25 -4.59 10.03 -39.37 -0.39 -4.99 16 14 C -0.07 -1.44 10.01 -39.60 -0.40 -1.83 16 15 C -0.19 -4.31 7.85 -38.88 -0.31 -4.62 16 16 C 0.12 2.90 5.18 -106.54 -0.55 2.35 16 17 C -0.46 -11.54 7.67 -37.81 -0.29 -11.83 16 18 H 0.11 2.83 5.90 -52.49 -0.31 2.52 16 19 C 0.03 0.75 5.05 -17.30 -0.09 0.66 16 20 N -0.78 -19.43 12.56 55.56 0.70 -18.73 16 21 Si 1.07 21.05 29.98 -169.99 -5.10 15.95 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.17 -1.25 5.35 -90.62 -0.48 -1.74 16 26 C -0.17 -1.23 10.18 -26.73 -0.27 -1.50 16 27 C -0.16 -1.00 9.73 -26.73 -0.26 -1.26 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.88 7.49 -51.93 -0.39 0.49 16 30 H 0.07 0.54 7.29 -51.93 -0.38 0.16 16 31 H 0.39 3.49 6.47 -40.82 -0.26 3.23 16 32 H 0.46 7.56 7.98 -182.60 -1.46 6.10 16 33 H 0.41 5.09 4.74 -182.59 -0.87 4.22 16 34 H 0.09 1.19 6.40 -52.49 -0.34 0.85 16 35 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.11 2.55 6.92 -52.49 -0.36 2.19 16 38 H 0.30 7.58 6.52 -40.82 -0.27 7.31 16 39 H 0.11 0.70 8.07 -51.93 -0.42 0.29 16 40 H 0.10 0.75 8.05 -51.93 -0.42 0.34 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.10 0.58 7.61 -51.93 -0.40 0.19 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -28.70 367.56 -13.48 -42.18 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -7.11 Total: 17.07 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -4.65 Total: -13.09 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.79 Total: -41.58 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.07 Total: -12.29 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.10 Total: 15.95 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -3.02 Total: -13.78 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.70 -13.48 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869219163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.590 kcal (2) G-P(sol) polarization free energy of solvation -28.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds