Wall clock time and date at job start Tue Mar 31 2020 18:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08992 * 109.47173 * 2 1 4 4 N 1.46504 * 109.47154 * 120.00518 * 2 1 3 5 5 C 1.34773 * 119.99694 * 274.99988 * 4 2 1 6 6 S 1.71203 * 120.00134 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00212 * 180.02562 * 5 4 2 8 8 N 1.40104 * 119.99803 * 359.97438 * 7 5 4 9 9 C 1.34772 * 120.00379 * 180.02562 * 8 7 5 10 10 O 1.21612 * 120.00021 * 0.02562 * 9 8 7 11 11 C 1.47428 * 120.00459 * 180.02562 * 9 8 7 12 12 C 1.39227 * 120.28169 * 357.35381 * 11 9 8 13 13 C 1.38223 * 120.09211 * 180.30292 * 12 11 9 14 14 C 1.38821 * 120.67815 * 359.70092 * 13 12 11 15 15 C 1.37607 * 120.56726 * 0.02562 * 14 13 12 16 16 C 1.40697 * 119.88060 * 0.02562 * 15 14 13 17 17 C 1.40898 * 120.32675 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00026 * 145.90944 * 17 16 15 19 19 C 1.40272 * 119.99546 * 325.90728 * 17 16 15 20 20 N 1.30628 * 120.00483 * 341.10839 * 19 17 16 21 21 Si 1.86806 * 119.99712 * 161.11635 * 19 17 16 22 22 H 1.48502 * 109.47037 * 180.02562 * 21 19 17 23 23 H 1.48501 * 109.46805 * 299.99446 * 21 19 17 24 24 H 1.48492 * 109.47210 * 59.99541 * 21 19 17 25 25 C 1.53004 * 109.46810 * 239.99968 * 2 1 3 26 26 C 1.53002 * 117.49713 * 128.62325 * 25 2 1 27 27 C 1.53003 * 117.49510 * 60.00153 * 25 2 1 28 28 H 1.08992 * 109.47173 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46614 * 299.99597 * 1 2 3 30 30 H 1.09003 * 109.47019 * 59.99394 * 1 2 3 31 31 H 0.96995 * 120.00230 * 94.99151 * 4 2 1 32 32 H 0.96998 * 120.00682 * 179.97438 * 7 5 4 33 33 H 0.97003 * 120.00008 * 0.02562 * 8 7 5 34 34 H 1.07996 * 119.95562 * 0.02562 * 12 11 9 35 35 H 1.08007 * 119.66166 * 179.71756 * 13 12 11 36 36 H 1.07993 * 119.71958 * 180.02562 * 14 13 12 37 37 H 1.07998 * 120.05609 * 180.02562 * 15 14 13 38 38 H 0.97002 * 119.99423 * 354.71963 * 20 19 17 39 39 H 1.08999 * 115.55400 * 274.33311 * 25 2 1 40 40 H 1.09002 * 117.49729 * 0.02562 * 26 25 2 41 41 H 1.08994 * 117.49742 * 145.01877 * 26 25 2 42 42 H 1.08996 * 117.49563 * 214.97441 * 27 25 2 43 43 H 1.08993 * 117.50027 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3571 6 16 1.7406 1.6428 2.4339 7 7 2.5969 -0.6537 3.4574 8 7 2.9301 -2.0130 3.3945 9 6 3.3793 -2.6485 4.4948 10 8 3.4951 -2.0420 5.5425 11 6 3.7305 -4.0788 4.4284 12 6 3.5485 -4.7922 3.2468 13 6 3.8733 -6.1346 3.1908 14 6 4.3884 -6.7858 4.3033 15 6 4.5847 -6.1059 5.4835 16 6 4.2613 -4.7392 5.5673 17 6 4.4580 -4.0341 6.7712 18 1 4.7498 -2.9946 6.7466 19 6 4.2747 -4.6823 8.0015 20 7 3.5834 -5.7891 8.0601 21 14 5.0190 -3.9625 9.5564 22 1 4.6834 -4.8307 10.7136 23 1 6.4945 -3.8843 9.4085 24 1 4.4713 -2.6010 9.7830 25 6 2.0400 -0.7213 -1.2493 26 6 3.0742 0.0051 -2.1117 27 6 1.6357 -0.1494 -2.6096 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 2.2490 -1.6319 1.1526 32 1 2.6899 -0.1698 4.2929 33 1 2.8375 -2.4969 2.5588 34 1 3.1489 -4.2973 2.3741 35 1 3.7250 -6.6825 2.2719 36 1 4.6371 -7.8349 4.2422 37 1 4.9863 -6.6206 6.3439 38 1 3.1329 -6.1220 7.2682 39 1 2.1267 -1.8045 -1.1644 40 1 3.3915 0.9967 -1.7889 41 1 3.8415 -0.6002 -2.5942 42 1 1.4568 -0.8565 -3.4196 43 1 1.0068 0.7408 -2.6145 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869219163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:22 Heat of formation + Delta-G solvation = 41.108012 kcal Electronic energy + Delta-G solvation = -25658.003280 eV Core-core repulsion = 22023.396472 eV Total energy + Delta-G solvation = -3634.606807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65067 -40.32758 -39.17310 -38.24461 -36.22239 -35.81613 -33.58931 -31.79592 -31.28985 -30.66117 -27.32135 -25.97287 -24.96815 -23.66446 -23.15192 -22.84712 -22.60879 -21.54099 -20.39337 -19.65714 -19.35421 -17.92342 -17.29564 -17.02233 -16.61608 -16.53623 -16.11064 -15.92221 -15.58254 -15.38626 -15.29679 -15.24934 -14.65595 -14.26426 -14.15222 -13.85070 -13.43656 -13.03640 -13.00057 -12.77717 -12.59313 -12.56923 -12.28967 -12.10927 -12.00910 -11.98401 -11.85050 -11.59274 -11.33648 -11.03436 -10.99205 -10.71622 -9.93261 -9.71075 -9.57839 -9.20681 -9.00464 -8.92909 -6.55957 0.04360 0.12324 0.32085 0.85606 1.01395 1.46487 1.51898 1.59539 1.74768 1.99057 2.26532 2.65979 2.85352 3.17137 3.45687 3.52842 3.89049 3.94210 4.07426 4.11529 4.14901 4.34974 4.38875 4.42543 4.60230 4.66084 4.80224 4.80977 4.83374 4.93235 5.03109 5.04865 5.10608 5.28451 5.32879 5.33139 5.35723 5.51306 5.58569 5.69042 5.83670 5.88658 5.97457 6.12195 6.25048 6.27465 6.68680 6.79132 7.20200 7.98189 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.003031 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.765432 B = 9235.639266 C =10678.580661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.173 3.827 3 H 0.098 0.902 4 N -0.659 5.659 5 C 0.584 3.416 6 S -0.686 6.686 7 N -0.462 5.462 8 N -0.542 5.542 9 C 0.568 3.432 10 O -0.558 6.558 11 C -0.277 4.277 12 C -0.039 4.039 13 C -0.237 4.237 14 C -0.067 4.067 15 C -0.221 4.221 16 C 0.101 3.899 17 C -0.506 4.506 18 H 0.085 0.915 19 C 0.001 3.999 20 N -0.810 5.810 21 Si 1.111 2.889 22 H -0.266 1.266 23 H -0.259 1.259 24 H -0.272 1.272 25 C -0.174 4.174 26 C -0.183 4.183 27 C -0.151 4.151 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.406 0.594 32 H 0.451 0.549 33 H 0.429 0.571 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.286 0.714 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.823 1.981 -19.571 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.070 3.930 3 H 0.116 0.884 4 N -0.291 5.291 5 C 0.218 3.782 6 S -0.563 6.563 7 N -0.187 5.187 8 N -0.296 5.296 9 C 0.363 3.637 10 O -0.436 6.436 11 C -0.284 4.284 12 C -0.057 4.057 13 C -0.255 4.255 14 C -0.086 4.086 15 C -0.240 4.240 16 C 0.096 3.904 17 C -0.534 4.534 18 H 0.103 0.897 19 C -0.216 4.216 20 N -0.433 5.433 21 Si 0.929 3.071 22 H -0.190 1.190 23 H -0.183 1.183 24 H -0.197 1.197 25 C -0.193 4.193 26 C -0.220 4.220 27 C -0.189 4.189 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.300 0.700 33 H 0.274 0.726 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.144 0.856 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.831 2.983 -17.294 17.777 hybrid contribution 0.099 -0.997 -1.227 1.584 sum -2.733 1.986 -18.522 18.827 Atomic orbital electron populations 1.22102 0.93224 1.02832 1.03358 1.21070 0.95230 0.97097 0.79634 0.88375 1.45076 1.63152 1.13400 1.07446 1.21931 0.81575 0.93130 0.81567 1.93656 1.74432 0.95621 1.92573 1.44641 1.61551 1.00001 1.12547 1.45398 1.70770 0.98453 1.14976 1.18709 0.75828 0.87623 0.81519 1.90748 1.54827 1.67973 1.30034 1.19257 1.18891 0.91458 0.98817 1.21117 0.95165 0.94661 0.94791 1.20844 1.10598 0.94795 0.99297 1.21219 0.95494 0.99306 0.92568 1.21239 1.08909 0.95316 0.98548 1.17794 0.87606 0.92184 0.92779 1.21197 1.39016 1.00713 0.92455 0.89738 1.28375 0.93755 0.93197 1.06293 1.70508 1.19838 1.18024 1.34953 0.83057 0.77139 0.75969 0.70965 1.18986 1.18340 1.19712 1.22423 1.06066 0.99943 0.90854 1.23141 0.93399 1.01944 1.03488 1.23042 0.97382 1.03425 0.95035 0.91521 0.93207 0.89301 0.75446 0.70042 0.72600 0.84340 0.84051 0.85590 0.89069 0.90118 0.85830 0.89308 0.87686 0.86790 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.27 71.98 0.67 -1.80 16 2 C 0.17 2.82 2.57 44.99 0.12 2.94 16 3 H 0.10 2.08 6.57 -2.39 -0.02 2.06 16 4 N -0.66 -12.15 5.04 -329.55 -1.66 -13.81 16 5 C 0.58 15.59 7.94 179.06 1.42 17.02 16 6 S -0.69 -23.30 28.14 -56.49 -1.59 -24.89 16 7 N -0.46 -13.58 6.26 -59.12 -0.37 -13.95 16 8 N -0.54 -15.61 6.21 -175.88 -1.09 -16.70 16 9 C 0.57 23.01 7.85 86.66 0.68 23.69 16 10 O -0.56 -27.42 13.38 -4.07 -0.05 -27.48 16 11 C -0.28 -11.60 5.92 -19.70 -0.12 -11.72 16 12 C -0.04 -1.23 9.53 22.50 0.21 -1.02 16 13 C -0.24 -7.41 10.03 22.41 0.22 -7.18 16 14 C -0.07 -2.46 10.01 22.26 0.22 -2.24 16 15 C -0.22 -10.05 7.85 22.72 0.18 -9.87 16 16 C 0.10 4.96 5.18 -21.11 -0.11 4.86 16 17 C -0.51 -27.05 7.67 23.42 0.18 -26.87 16 18 H 0.08 4.78 5.90 -2.91 -0.02 4.76 16 19 C 0.00 0.03 5.05 85.37 0.43 0.47 16 20 N -0.81 -42.51 12.56 21.88 0.27 -42.24 16 21 Si 1.11 44.73 29.98 68.60 2.06 46.78 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 25 C -0.17 -1.89 5.35 -10.79 -0.06 -1.95 16 26 C -0.18 -2.05 10.18 30.60 0.31 -1.74 16 27 C -0.15 -1.33 9.73 30.60 0.30 -1.03 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 1.08 7.49 -2.38 -0.02 1.07 16 30 H 0.09 1.10 7.29 -2.39 -0.02 1.08 16 31 H 0.41 5.45 6.47 -92.71 -0.60 4.85 16 32 H 0.45 15.04 7.98 -213.32 -1.70 13.34 16 33 H 0.43 8.81 4.74 -213.31 -1.01 7.80 16 34 H 0.14 2.88 6.40 -2.91 -0.02 2.86 16 35 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 36 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.09 4.42 6.92 -2.91 -0.02 4.40 16 38 H 0.29 15.31 6.52 -92.71 -0.60 14.70 16 39 H 0.12 0.99 8.07 -2.39 -0.02 0.97 16 40 H 0.09 1.21 8.05 -2.39 -0.02 1.19 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.10 0.88 7.61 -2.39 -0.02 0.86 16 Total: -1.00 -68.02 367.56 0.16 -67.85 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -2.07 Total: 40.88 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.66 Total: -16.46 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.85 Total: -86.70 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.05 Total: -27.48 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.06 Total: 46.78 kcal Atomic # 16 Polarization: -23.30 SS G_CDS: -1.59 Total: -24.89 kcal Total: -68.02 0.16 -67.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869219163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.963 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds