Wall clock time and date at job start Tue Mar 31 2020 18:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46991 * 2 1 4 4 C 1.46502 * 120.00092 * 274.84874 * 3 2 1 5 5 C 1.50701 * 109.47059 * 263.30896 * 4 3 2 6 6 H 1.07992 * 120.00256 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99623 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99862 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00044 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46809 * 59.99768 * 9 7 5 11 11 H 1.48497 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46657 * 300.00302 * 9 7 5 13 13 C 1.34775 * 120.00014 * 94.85627 * 3 2 1 14 14 O 1.21365 * 119.99664 * 354.71515 * 13 3 2 15 15 C 1.49347 * 120.00537 * 174.71928 * 13 3 2 16 16 O 1.21383 * 119.99331 * 0.56446 * 15 13 3 17 17 N 1.34769 * 120.00469 * 180.56398 * 15 13 3 18 18 C 1.39836 * 120.00146 * 185.73846 * 17 15 13 19 19 C 1.38597 * 119.97056 * 23.87793 * 18 17 15 20 20 C 1.39556 * 119.79410 * 179.72664 * 19 18 17 21 21 C 1.43207 * 120.13554 * 180.27323 * 20 19 18 22 22 N 9.20508 * 100.66699 * 355.96437 * 2 1 3 23 23 C 1.39910 * 119.73480 * 0.54520 * 20 19 18 24 24 F 1.35102 * 120.03668 * 179.74792 * 23 20 19 25 25 C 1.38268 * 119.92839 * 359.47669 * 23 20 19 26 26 C 1.38164 * 120.21093 * 0.25197 * 25 23 20 27 27 C 1.50700 * 119.86680 * 180.02562 * 26 25 23 28 28 H 1.09004 * 109.46887 * 300.00062 * 1 2 3 29 29 H 1.08995 * 109.46905 * 59.99488 * 1 2 3 30 30 H 1.08993 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00413 * 2 1 3 32 32 H 1.08995 * 109.47547 * 120.00115 * 2 1 3 33 33 H 1.08991 * 109.46979 * 23.31295 * 4 3 2 34 34 H 1.08999 * 109.46714 * 143.30969 * 4 3 2 35 35 H 0.97007 * 119.99812 * 179.97438 * 8 7 5 36 36 H 0.97004 * 120.00247 * 5.73844 * 17 15 13 37 37 H 1.08005 * 120.10019 * 0.02562 * 19 18 17 38 38 H 1.08008 * 119.89738 * 180.22711 * 25 23 20 39 39 H 1.09000 * 109.47246 * 89.99838 * 27 26 25 40 40 H 1.09002 * 109.46839 * 210.00122 * 27 26 25 41 41 H 1.08998 * 109.46951 * 329.99547 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1614 2.1077 -1.2642 5 6 3.5905 2.0209 -1.7345 6 1 4.3192 1.4786 -1.1504 7 6 3.9674 2.6330 -2.9110 8 7 3.0798 3.2930 -3.6225 9 14 5.7387 2.5249 -3.4944 10 1 6.1070 1.1007 -3.6969 11 1 5.8836 3.2613 -4.7757 12 1 6.6335 3.1273 -2.4738 13 6 2.3361 1.9837 1.1630 14 8 2.1279 1.4177 2.2162 15 6 2.9443 3.3476 1.1558 16 8 3.1430 3.9179 0.1028 17 7 3.2726 3.9453 2.3182 18 6 3.7296 5.2669 2.3203 19 6 3.3973 6.1161 1.2766 20 6 3.8507 7.4359 1.2853 21 6 3.5068 8.3213 0.2135 22 7 3.2339 9.0236 -0.6366 23 6 4.6473 7.8891 2.3424 24 9 5.0938 9.1641 2.3544 25 6 4.9726 7.0322 3.3776 26 6 4.5176 5.7276 3.3693 27 6 4.8763 4.8005 4.5019 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5048 1.6656 -2.0135 34 1 1.8907 3.1529 -1.1152 35 1 3.3451 3.7240 -4.4501 36 1 3.1918 3.4588 3.1536 37 1 2.7853 5.7589 0.4616 38 1 5.5845 7.3836 4.1953 39 1 4.1174 4.8685 5.2814 40 1 4.9258 3.7765 4.1314 41 1 5.8450 5.0857 4.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873815770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:12 Heat of formation + Delta-G solvation = -39.729462 kcal Electronic energy + Delta-G solvation = -28554.655393 eV Core-core repulsion = 24350.330034 eV Total energy + Delta-G solvation = -4204.325359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.08289 -40.96723 -39.46982 -37.88484 -36.60701 -35.80239 -34.40289 -32.95422 -32.71209 -30.60285 -29.77839 -27.94426 -27.14756 -25.09020 -23.43106 -23.11693 -22.58044 -21.50273 -19.63216 -19.14995 -17.52939 -17.34308 -16.75108 -16.44292 -16.16057 -15.90425 -15.63943 -15.28681 -14.97907 -14.37845 -14.24833 -14.12143 -13.78211 -13.73321 -13.56137 -13.51330 -13.38663 -13.10257 -13.06223 -12.42762 -12.37898 -12.19962 -12.09132 -11.89095 -11.79129 -11.72458 -11.40045 -11.01666 -10.86771 -10.69562 -10.55726 -10.30919 -10.04622 -9.76839 -9.14499 -8.80834 -8.38009 -8.10441 -7.94127 -6.08363 -4.11073 0.46070 0.94515 1.92850 2.57115 2.74035 2.82257 3.29139 3.34922 3.36318 3.57264 3.70390 3.79984 3.95414 3.98700 4.40674 4.45598 4.57203 4.82475 4.94235 5.18528 5.23376 5.28663 5.33225 5.44462 5.56329 5.61261 5.67624 5.72856 5.81909 5.91964 6.08145 6.09449 6.19781 6.22118 6.48450 6.59115 6.69625 7.16136 7.27788 7.36874 7.50472 7.78958 7.96715 8.09699 8.16077 8.51129 8.88104 9.52129 11.00288 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.004631 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.891126 B = 6044.702805 C = 7687.580132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.556 5.556 4 C 0.229 3.771 5 C -0.517 4.517 6 H 0.054 0.946 7 C 0.072 3.928 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.508 3.492 14 O -0.560 6.560 15 C 0.487 3.513 16 O -0.422 6.422 17 N -0.656 5.656 18 C 0.156 3.844 19 C -0.056 4.056 20 C -0.040 4.040 21 C 0.256 3.744 22 N -0.402 5.402 23 C 0.121 3.879 24 F -0.132 7.132 25 C -0.132 4.132 26 C -0.065 4.065 27 C -0.121 4.121 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.263 0.737 36 H 0.420 0.580 37 H 0.171 0.829 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 1.304 16.461 16.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.110 3.890 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.131 4.131 8 N -0.527 5.527 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.442 6.442 15 C 0.269 3.731 16 O -0.289 6.289 17 N -0.304 5.304 18 C 0.059 3.941 19 C -0.079 4.079 20 C -0.045 4.045 21 C -0.059 4.059 22 N -0.077 5.077 23 C 0.098 3.902 24 F -0.110 7.110 25 C -0.151 4.151 26 C -0.069 4.069 27 C -0.178 4.178 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.259 0.741 37 H 0.188 0.812 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.029 2.564 14.604 14.828 hybrid contribution 1.276 -0.261 0.108 1.307 sum 1.247 2.304 14.712 14.944 Atomic orbital electron populations 1.22103 0.96115 1.01684 1.02323 1.21460 0.94051 0.82600 1.03125 1.48327 1.58481 1.13525 1.08242 1.19947 0.97844 0.93227 0.77990 1.21119 0.94130 1.33687 1.06656 0.92826 1.24785 0.97201 0.94766 0.96395 1.69888 1.33776 1.33961 1.15059 0.86669 0.85282 0.78037 0.78095 1.20321 1.21202 1.20237 1.19604 0.80477 0.86264 0.84677 1.90661 1.56317 1.66252 1.30940 1.20564 0.80711 0.88283 0.83590 1.90974 1.45504 1.63597 1.28860 1.43305 1.64881 1.11080 1.11113 1.17370 0.96673 0.84455 0.95606 1.21495 0.97990 0.89144 0.99232 1.15769 1.04208 0.92522 0.91982 1.25213 0.94215 0.93353 0.93168 1.81211 1.07927 1.09242 1.09310 1.17491 0.97646 0.79790 0.95266 1.91524 1.87288 1.35787 1.96400 1.20642 1.03299 0.92467 0.98710 1.19628 0.95786 0.94676 0.96775 1.20854 1.02790 0.98496 0.95637 0.92660 0.92178 0.91971 0.89835 0.90466 0.94745 0.91892 0.92681 0.74114 0.81211 0.83373 0.90034 0.90713 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.81 6.11 -4.04 -0.02 1.78 16 3 N -0.56 -10.93 2.48 -175.61 -0.43 -11.36 16 4 C 0.23 5.34 4.79 -5.19 -0.02 5.32 16 5 C -0.52 -13.44 7.76 -34.44 -0.27 -13.71 16 6 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 7 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 8 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.51 9.55 7.67 -11.63 -0.09 9.46 16 14 O -0.56 -10.37 16.04 5.48 0.09 -10.28 16 15 C 0.49 8.72 7.53 -11.64 -0.09 8.63 16 16 O -0.42 -9.01 9.22 5.47 0.05 -8.96 16 17 N -0.66 -8.92 4.97 -10.32 -0.05 -8.97 16 18 C 0.16 2.00 6.42 -83.77 -0.54 1.46 16 19 C -0.06 -0.83 8.43 -38.96 -0.33 -1.15 16 20 C -0.04 -0.56 5.74 -106.85 -0.61 -1.18 16 21 C 0.26 4.21 14.97 -22.47 -0.34 3.87 16 22 N -0.40 -7.38 18.54 41.84 0.78 -6.60 16 23 C 0.12 1.44 7.28 -38.94 -0.28 1.16 16 24 F -0.13 -1.65 16.80 2.25 0.04 -1.61 16 25 C -0.13 -1.23 9.65 -39.60 -0.38 -1.61 16 26 C -0.06 -0.63 5.90 -104.35 -0.62 -1.25 16 27 C -0.12 -0.81 9.43 36.01 0.34 -0.47 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 32 H 0.08 1.21 7.36 -51.93 -0.38 0.83 16 33 H 0.03 0.84 8.02 -51.93 -0.42 0.42 16 34 H 0.06 1.59 5.85 -51.93 -0.30 1.29 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.42 4.71 6.82 -40.82 -0.28 4.43 16 37 H 0.17 2.93 5.71 -52.48 -0.30 2.64 16 38 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.54 6.95 -51.93 -0.36 0.18 16 41 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -30.96 363.22 -5.85 -36.81 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.54 Total: 1.42 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: -2.97 Total: 12.24 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: 1.03 Total: -51.43 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.14 Total: -19.24 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.96 -5.85 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873815770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.916 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds