Wall clock time and date at job start Tue Mar 31 2020 18:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46991 * 2 1 4 4 C 1.46502 * 120.00092 * 274.84874 * 3 2 1 5 5 C 1.50701 * 109.47059 * 263.30896 * 4 3 2 6 6 H 1.07992 * 120.00256 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99623 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99862 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00044 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46809 * 59.99768 * 9 7 5 11 11 H 1.48497 * 109.47202 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46657 * 300.00302 * 9 7 5 13 13 C 1.34775 * 120.00014 * 94.85627 * 3 2 1 14 14 O 1.21365 * 119.99664 * 354.71515 * 13 3 2 15 15 C 1.49347 * 120.00537 * 174.71928 * 13 3 2 16 16 O 1.21383 * 119.99331 * 0.56446 * 15 13 3 17 17 N 1.34769 * 120.00469 * 180.56398 * 15 13 3 18 18 C 1.39836 * 120.00146 * 185.73846 * 17 15 13 19 19 C 1.38597 * 119.97056 * 23.87793 * 18 17 15 20 20 C 1.39556 * 119.79410 * 179.72664 * 19 18 17 21 21 C 1.43207 * 120.13554 * 180.27323 * 20 19 18 22 22 N 9.20508 * 100.66699 * 355.96437 * 2 1 3 23 23 C 1.39910 * 119.73480 * 0.54520 * 20 19 18 24 24 F 1.35102 * 120.03668 * 179.74792 * 23 20 19 25 25 C 1.38268 * 119.92839 * 359.47669 * 23 20 19 26 26 C 1.38164 * 120.21093 * 0.25197 * 25 23 20 27 27 C 1.50700 * 119.86680 * 180.02562 * 26 25 23 28 28 H 1.09004 * 109.46887 * 300.00062 * 1 2 3 29 29 H 1.08995 * 109.46905 * 59.99488 * 1 2 3 30 30 H 1.08993 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47056 * 240.00413 * 2 1 3 32 32 H 1.08995 * 109.47547 * 120.00115 * 2 1 3 33 33 H 1.08991 * 109.46979 * 23.31295 * 4 3 2 34 34 H 1.08999 * 109.46714 * 143.30969 * 4 3 2 35 35 H 0.97007 * 119.99812 * 179.97438 * 8 7 5 36 36 H 0.97004 * 120.00247 * 5.73844 * 17 15 13 37 37 H 1.08005 * 120.10019 * 0.02562 * 19 18 17 38 38 H 1.08008 * 119.89738 * 180.22711 * 25 23 20 39 39 H 1.09000 * 109.47246 * 89.99838 * 27 26 25 40 40 H 1.09002 * 109.46839 * 210.00122 * 27 26 25 41 41 H 1.08998 * 109.46951 * 329.99547 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1614 2.1077 -1.2642 5 6 3.5905 2.0209 -1.7345 6 1 4.3192 1.4786 -1.1504 7 6 3.9674 2.6330 -2.9110 8 7 3.0798 3.2930 -3.6225 9 14 5.7387 2.5249 -3.4944 10 1 6.1070 1.1007 -3.6969 11 1 5.8836 3.2613 -4.7757 12 1 6.6335 3.1273 -2.4738 13 6 2.3361 1.9837 1.1630 14 8 2.1279 1.4177 2.2162 15 6 2.9443 3.3476 1.1558 16 8 3.1430 3.9179 0.1028 17 7 3.2726 3.9453 2.3182 18 6 3.7296 5.2669 2.3203 19 6 3.3973 6.1161 1.2766 20 6 3.8507 7.4359 1.2853 21 6 3.5068 8.3213 0.2135 22 7 3.2339 9.0236 -0.6366 23 6 4.6473 7.8891 2.3424 24 9 5.0938 9.1641 2.3544 25 6 4.9726 7.0322 3.3776 26 6 4.5176 5.7276 3.3693 27 6 4.8763 4.8005 4.5019 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5048 1.6656 -2.0135 34 1 1.8907 3.1529 -1.1152 35 1 3.3451 3.7240 -4.4501 36 1 3.1918 3.4588 3.1536 37 1 2.7853 5.7589 0.4616 38 1 5.5845 7.3836 4.1953 39 1 4.1174 4.8685 5.2814 40 1 4.9258 3.7765 4.1314 41 1 5.8450 5.0857 4.9120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873815770.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:11 Heat of formation + Delta-G solvation = -58.143084 kcal Electronic energy + Delta-G solvation = -28555.453868 eV Core-core repulsion = 24350.330034 eV Total energy + Delta-G solvation = -4205.123834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.08164 -42.24765 -40.72892 -39.24204 -37.92728 -37.30182 -35.66443 -34.67645 -33.88374 -32.03721 -30.82480 -29.04640 -28.75531 -26.42774 -25.00566 -24.51902 -23.56178 -22.72904 -20.92634 -20.36022 -18.95873 -18.61109 -18.39211 -17.68048 -17.55723 -16.94940 -16.86821 -16.72799 -16.55700 -16.01311 -15.51209 -15.19526 -15.11266 -14.88798 -14.64574 -14.62067 -14.47095 -14.38104 -14.25513 -14.18280 -13.66506 -13.52007 -13.33862 -13.15698 -12.88261 -12.78143 -12.74845 -12.70136 -12.44633 -12.28372 -12.03844 -11.79690 -11.68147 -11.47930 -10.62349 -10.22124 -9.99495 -9.63102 -9.12572 -8.15015 -6.22541 -0.56601 -0.09526 0.56407 1.29301 1.37137 1.39728 1.44031 1.45992 1.66396 2.21358 2.38361 2.51930 2.59844 2.68060 2.98275 3.20037 3.38082 3.59064 3.72616 4.01031 4.17634 4.23555 4.37114 4.53938 4.56135 4.61755 4.76483 4.78076 4.87711 4.91969 4.96459 5.03701 5.15089 5.21448 5.26951 5.31911 5.40552 5.55005 5.69889 5.75639 6.06522 6.11812 6.21962 6.32596 6.75758 6.82382 7.07225 7.43665 8.92446 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009581 B = 0.004631 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.891126 B = 6044.702805 C = 7687.580132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.104 3.896 3 N -0.565 5.565 4 C 0.248 3.752 5 C -0.512 4.512 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.922 5.922 9 Si 0.944 3.056 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.279 1.279 13 C 0.506 3.494 14 O -0.554 6.554 15 C 0.486 3.514 16 O -0.466 6.466 17 N -0.634 5.634 18 C 0.136 3.864 19 C -0.069 4.069 20 C -0.063 4.063 21 C 0.270 3.730 22 N -0.450 5.450 23 C 0.130 3.870 24 F -0.133 7.133 25 C -0.113 4.113 26 C -0.036 4.036 27 C -0.124 4.124 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.042 0.958 35 H 0.260 0.740 36 H 0.434 0.566 37 H 0.136 0.864 38 H 0.194 0.806 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 0.366 19.991 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.018 4.018 3 N -0.295 5.295 4 C 0.127 3.873 5 C -0.550 4.550 6 H 0.067 0.933 7 C -0.177 4.177 8 N -0.563 5.563 9 Si 0.770 3.230 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.289 3.711 14 O -0.435 6.435 15 C 0.268 3.732 16 O -0.336 6.336 17 N -0.283 5.283 18 C 0.040 3.960 19 C -0.092 4.092 20 C -0.068 4.068 21 C -0.045 4.045 22 N -0.125 5.125 23 C 0.107 3.893 24 F -0.112 7.112 25 C -0.131 4.131 26 C -0.039 4.039 27 C -0.180 4.180 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.275 0.725 37 H 0.154 0.846 38 H 0.211 0.789 39 H 0.126 0.874 40 H 0.089 0.911 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.619 1.603 18.206 18.348 hybrid contribution 0.770 0.018 -0.784 1.099 sum 2.389 1.620 17.423 17.660 Atomic orbital electron populations 1.22033 0.94252 1.03505 1.01500 1.21693 0.95615 0.80885 1.03564 1.48279 1.59296 1.14678 1.07257 1.19426 0.96200 0.92435 0.79193 1.21330 0.95112 1.32472 1.06132 0.93306 1.25483 1.00473 0.94835 0.96906 1.70005 1.35398 1.35379 1.15472 0.85826 0.81284 0.78570 0.77302 1.18822 1.21391 1.20428 1.19787 0.80239 0.86662 0.84460 1.90649 1.56105 1.66347 1.30416 1.20517 0.80476 0.87918 0.84247 1.90987 1.47688 1.64372 1.30570 1.43042 1.63671 1.11352 1.10279 1.17499 0.98309 0.83660 0.96507 1.21184 0.98673 0.89957 0.99434 1.15791 1.06345 0.92049 0.92583 1.25733 0.93026 0.92776 0.92975 1.81192 1.09745 1.10906 1.10698 1.17656 0.96618 0.79983 0.95028 1.91529 1.87142 1.36106 1.96374 1.21089 1.02249 0.91352 0.98445 1.20025 0.92774 0.95236 0.95888 1.21051 1.05048 0.97204 0.94732 0.93047 0.93358 0.88804 0.89941 0.89400 0.96150 0.94012 0.93068 0.72493 0.84589 0.78897 0.87423 0.91147 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.10 3.33 6.11 86.38 0.53 3.86 16 3 N -0.56 -22.43 2.48 -827.86 -2.05 -24.48 16 4 C 0.25 12.02 4.79 85.63 0.41 12.43 16 5 C -0.51 -27.18 7.76 25.60 0.20 -26.98 16 6 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 7 C 0.02 1.24 5.46 84.66 0.46 1.70 16 8 N -0.92 -54.30 13.29 21.45 0.28 -54.01 16 9 Si 0.94 44.37 29.54 68.60 2.03 46.39 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.51 18.94 7.67 87.24 0.67 19.60 16 14 O -0.55 -19.68 16.04 -3.29 -0.05 -19.73 16 15 C 0.49 17.68 7.53 87.24 0.66 18.33 16 16 O -0.47 -20.84 9.22 -3.35 -0.03 -20.87 16 17 N -0.63 -16.59 4.97 -304.92 -1.52 -18.11 16 18 C 0.14 3.32 6.42 38.14 0.24 3.56 16 19 C -0.07 -2.12 8.43 22.67 0.19 -1.93 16 20 C -0.06 -1.79 5.74 -21.31 -0.12 -1.91 16 21 C 0.27 9.32 14.97 88.33 1.32 10.65 16 22 N -0.45 -17.49 18.54 19.01 0.35 -17.14 16 23 C 0.13 2.83 7.28 22.68 0.17 3.00 16 24 F -0.13 -3.07 16.80 44.97 0.76 -2.31 16 25 C -0.11 -1.60 9.65 22.26 0.21 -1.38 16 26 C -0.04 -0.56 5.90 -19.69 -0.12 -0.67 16 27 C -0.12 -1.00 9.43 71.24 0.67 -0.33 16 28 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 32 H 0.09 2.62 7.36 -2.39 -0.02 2.61 16 33 H 0.02 1.04 8.02 -2.39 -0.02 1.02 16 34 H 0.04 2.24 5.85 -2.39 -0.01 2.23 16 35 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 36 H 0.43 8.72 6.82 -92.71 -0.63 8.09 16 37 H 0.14 5.15 5.71 -2.91 -0.02 5.14 16 38 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.07 0.71 6.95 -2.39 -0.02 0.69 16 41 H 0.11 0.40 8.08 -2.39 -0.02 0.38 16 Total: -1.00 -70.76 363.22 6.47 -64.29 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.47 Total: 9.49 kcal Atomic # 6 Polarization: 30.26 SS G_CDS: 6.23 Total: 36.49 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -2.93 Total: -113.74 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -0.08 Total: -40.61 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.76 Total: -2.31 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -70.76 6.47 -64.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873815770.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.143 kcal (2) G-P(sol) polarization free energy of solvation -70.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds