Wall clock time and date at job start Tue Mar 31 2020 18:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.75148 * 2 1 4 4 C 1.53817 * 109.69220 * 120.66833 * 2 1 3 5 5 N 1.46964 * 108.57527 * 169.28860 * 4 2 1 6 6 C 1.34780 * 120.59529 * 124.66829 * 5 4 2 7 7 O 1.21706 * 119.99972 * 175.00486 * 6 5 4 8 8 C 1.46583 * 119.99755 * 354.99972 * 6 5 4 9 9 S 1.75833 * 125.45831 * 48.31042 * 8 6 5 10 10 C 1.70613 * 91.56226 * 179.90995 * 9 8 6 11 11 C 1.33817 * 110.95672 * 0.35584 * 10 9 8 12 12 C 1.36643 * 125.45895 * 228.61448 * 8 6 5 13 13 C 1.50700 * 123.35305 * 359.97438 * 12 8 6 14 14 C 1.47204 * 109.46915 * 85.00145 * 13 12 8 15 15 N 4.95156 * 131.81308 * 15.16159 * 2 1 3 16 16 C 1.46964 * 118.81364 * 304.64597 * 5 4 2 17 17 C 1.53374 * 108.63849 * 55.22429 * 16 5 4 18 18 H 1.08996 * 109.75478 * 190.74984 * 17 16 5 19 19 C 1.53002 * 109.60680 * 70.32243 * 17 16 5 20 20 N 1.46964 * 108.63308 * 310.57929 * 17 16 5 21 21 C 1.36928 * 120.59518 * 235.19710 * 20 17 16 22 22 H 1.08007 * 120.00197 * 119.30976 * 21 20 17 23 23 C 1.38809 * 120.00415 * 299.31619 * 21 20 17 24 24 N 1.31624 * 119.99814 * 344.86134 * 23 21 20 25 25 Si 1.86796 * 120.00607 * 164.86614 * 23 21 20 26 26 H 1.48492 * 109.47556 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47121 * 300.00269 * 25 23 21 28 28 H 1.48507 * 109.46894 * 59.99626 * 25 23 21 29 29 H 1.09004 * 109.47475 * 162.24445 * 1 2 3 30 30 H 1.09007 * 109.46962 * 282.24157 * 1 2 3 31 31 H 1.09005 * 109.47166 * 42.24019 * 1 2 3 32 32 H 1.08992 * 109.74347 * 49.49770 * 4 2 1 33 33 H 1.09000 * 109.67473 * 289.03026 * 4 2 1 34 34 H 1.08003 * 124.51863 * 180.11007 * 10 9 8 35 35 H 1.07994 * 122.44594 * 179.70044 * 11 10 9 36 36 H 1.09003 * 109.47483 * 205.00040 * 13 12 8 37 37 H 1.09000 * 109.46991 * 325.00631 * 13 12 8 38 38 H 1.09006 * 109.60721 * 295.48302 * 16 5 4 39 39 H 1.09002 * 109.75279 * 175.05557 * 16 5 4 40 40 H 1.09005 * 109.47232 * 300.85756 * 19 17 16 41 41 H 1.09001 * 109.47143 * 60.85118 * 19 17 16 42 42 H 1.08995 * 109.46936 * 180.86038 * 19 17 16 43 43 H 0.97003 * 120.00233 * 175.11560 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0483 -0.7387 1.2457 5 7 3.4948 -0.9510 1.0960 6 6 4.3533 -0.5154 2.0393 7 8 5.5388 -0.7760 1.9502 8 6 3.8591 0.2721 3.1726 9 16 2.4733 -0.1394 4.1736 10 6 2.6896 1.2575 5.1289 11 6 3.7352 1.9739 4.6996 12 6 4.3979 1.4467 3.6167 13 6 5.5996 2.0989 2.9829 14 6 5.1660 2.9247 1.8440 15 7 4.8312 3.5621 0.9652 16 6 3.9885 -1.6471 -0.1005 17 6 3.4697 -0.9135 -1.3435 18 1 3.6612 -1.5142 -2.2325 19 6 4.1761 0.4374 -1.4746 20 7 2.0232 -0.7012 -1.1938 21 6 1.1510 -1.1436 -2.1522 22 1 0.3913 -1.8680 -1.8980 23 6 1.2432 -0.6613 -3.4505 24 7 1.9510 0.4195 -3.7023 25 14 0.3629 -1.5458 -4.8404 26 1 0.6175 -0.8353 -6.1192 27 1 0.8675 -2.9390 -4.9386 28 1 -1.0969 -1.5662 -4.5681 29 1 -0.3634 -0.9787 -0.3134 30 1 -0.3633 0.2179 1.0044 31 1 -0.3634 0.7608 -0.6909 32 1 1.5451 -1.7010 1.3391 33 1 1.8569 -0.1379 2.1348 34 1 2.0636 1.5296 5.9659 35 1 4.0360 2.8986 5.1692 36 1 6.1013 2.7283 3.7179 37 1 6.2880 1.3298 2.6327 38 1 3.6234 -2.6741 -0.1029 39 1 5.0785 -1.6463 -0.1036 40 1 3.9881 1.0339 -0.5818 41 1 5.2486 0.2773 -1.5853 42 1 3.7948 0.9633 -2.3498 43 1 2.0742 0.7164 -4.6175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880452818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:34 Heat of formation + Delta-G solvation = 56.325138 kcal Electronic energy + Delta-G solvation = -27643.591236 eV Core-core repulsion = 24009.644293 eV Total energy + Delta-G solvation = -3633.946943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.05919 -38.45284 -37.09366 -36.15769 -34.02904 -32.66044 -31.63968 -31.37968 -28.99871 -27.89922 -26.26864 -25.54276 -24.02073 -23.55902 -21.44688 -20.54003 -19.15765 -18.73076 -17.94940 -17.35693 -16.42831 -15.89816 -15.75689 -15.02112 -14.96356 -14.72853 -14.30005 -14.18698 -13.75516 -13.56256 -13.51206 -13.18047 -13.03657 -12.80611 -12.45885 -12.32241 -11.97842 -11.93724 -11.76148 -11.63544 -11.39714 -11.16311 -11.08219 -10.93362 -10.80047 -10.62016 -10.49052 -10.36246 -10.09886 -9.98234 -9.80654 -9.41951 -8.91534 -8.54912 -8.42561 -8.21219 -6.31932 -5.69690 -3.73050 0.49484 1.27438 1.76520 2.25477 2.89773 2.96493 3.05523 3.31315 3.38302 3.39050 3.46147 4.20154 4.40001 4.63976 4.66918 4.97811 5.09505 5.16769 5.25751 5.30669 5.51120 5.62700 5.66682 5.76242 5.88403 5.93739 6.09161 6.12307 6.16374 6.24487 6.29493 6.41425 6.47904 6.53672 6.75702 6.81324 6.94776 7.09150 7.20812 7.31727 7.64002 7.71416 7.76362 7.86205 8.35884 8.64059 9.18478 9.63330 10.46281 11.13247 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.004337 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.230558 B = 6455.009978 C = 6958.897927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.159 3.841 3 H 0.030 0.970 4 C 0.080 3.920 5 N -0.580 5.580 6 C 0.580 3.420 7 O -0.540 6.540 8 C -0.235 4.235 9 S 0.234 5.766 10 C -0.252 4.252 11 C -0.132 4.132 12 C -0.052 4.052 13 C 0.029 3.971 14 C 0.200 3.800 15 N -0.415 5.415 16 C 0.097 3.903 17 C 0.177 3.823 18 H 0.076 0.924 19 C -0.154 4.154 20 N -0.570 5.570 21 C -0.278 4.278 22 H 0.052 0.948 23 C 0.041 3.959 24 N -0.868 5.868 25 Si 0.891 3.109 26 H -0.291 1.291 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.030 0.970 41 H 0.023 0.977 42 H 0.088 0.912 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 0.144 18.257 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 H 0.047 0.953 4 C -0.045 4.045 5 N -0.310 5.310 6 C 0.366 3.634 7 O -0.420 6.420 8 C -0.356 4.356 9 S 0.503 5.497 10 C -0.389 4.389 11 C -0.163 4.163 12 C -0.068 4.068 13 C -0.013 4.013 14 C -0.119 4.119 15 N -0.091 5.091 16 C -0.027 4.027 17 C 0.069 3.931 18 H 0.094 0.906 19 C -0.213 4.213 20 N -0.293 5.293 21 C -0.408 4.408 22 H 0.069 0.931 23 C -0.163 4.163 24 N -0.505 5.505 25 Si 0.719 3.281 26 H -0.217 1.217 27 H -0.205 1.205 28 H -0.204 1.204 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.186 0.814 35 H 0.164 0.836 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.107 0.893 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.528 -0.097 16.748 16.818 hybrid contribution 0.604 0.726 -0.370 1.015 sum 2.132 0.629 16.378 16.528 Atomic orbital electron populations 1.21672 0.94994 1.03253 0.98753 1.20901 0.93426 0.93757 0.86715 0.95270 1.22946 0.79586 1.01315 1.00644 1.47884 1.07301 1.55370 1.20427 1.16997 0.85897 0.79288 0.81204 1.90768 1.15630 1.58373 1.77260 1.24609 1.03557 1.02642 1.04818 1.83317 1.24142 1.22374 1.19863 1.25325 1.04230 1.02290 1.07102 1.19774 0.96695 1.02130 0.97698 1.18800 0.97740 0.93814 0.96445 1.17906 0.95414 0.97286 0.90651 1.28865 0.94375 0.94148 0.94501 1.81282 1.07303 1.10376 1.10143 1.22489 0.99548 0.95547 0.85078 1.20789 0.84912 0.94112 0.93246 0.90586 1.22164 0.96956 0.99407 1.02738 1.43797 1.00513 1.64939 1.20027 1.18604 1.13823 1.19658 0.88732 0.93071 1.25794 0.97011 0.93842 0.99703 1.70007 1.40989 1.20275 1.19272 0.86619 0.80093 0.79651 0.81693 1.21655 1.20542 1.20435 0.91472 0.94679 0.92440 0.91114 0.91029 0.81380 0.83649 0.86185 0.85127 0.91777 0.89954 0.95132 0.95759 0.89321 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.57 37.16 0.32 -2.12 16 2 C 0.16 3.29 3.25 -67.25 -0.22 3.07 16 3 H 0.03 0.70 7.38 -51.93 -0.38 0.31 16 4 C 0.08 1.37 5.42 -3.36 -0.02 1.35 16 5 N -0.58 -10.44 2.59 -173.78 -0.45 -10.89 16 6 C 0.58 9.99 7.19 -12.89 -0.09 9.90 16 7 O -0.54 -10.28 15.08 5.18 0.08 -10.20 16 8 C -0.24 -3.29 5.43 -36.79 -0.20 -3.49 16 9 S 0.23 2.51 20.05 -107.50 -2.16 0.35 16 10 C -0.25 -2.23 10.92 29.18 0.32 -1.91 16 11 C -0.13 -1.24 9.96 -41.41 -0.41 -1.65 16 12 C -0.05 -0.62 5.11 -105.48 -0.54 -1.16 16 13 C 0.03 0.32 5.70 -30.67 -0.17 0.14 16 14 C 0.20 2.99 15.42 -20.76 -0.32 2.67 16 15 N -0.41 -7.65 18.54 42.16 0.78 -6.87 16 16 C 0.10 1.85 5.95 -3.60 -0.02 1.83 16 17 C 0.18 3.94 2.80 -67.48 -0.19 3.75 16 18 H 0.08 1.81 7.88 -51.93 -0.41 1.40 16 19 C -0.15 -3.56 9.09 37.16 0.34 -3.22 16 20 N -0.57 -13.31 2.39 -156.76 -0.37 -13.68 16 21 C -0.28 -7.06 7.56 -15.06 -0.11 -7.17 16 22 H 0.05 1.30 6.99 -52.48 -0.37 0.94 16 23 C 0.04 1.08 5.25 -17.43 -0.09 0.99 16 24 N -0.87 -24.13 11.65 55.49 0.65 -23.49 16 25 Si 0.89 20.55 29.58 -169.99 -5.03 15.52 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 1.30 6.55 -51.93 -0.34 0.96 16 30 H 0.03 0.53 8.03 -51.93 -0.42 0.12 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.16 8.12 -51.93 -0.42 0.73 16 33 H 0.07 1.07 4.00 -31.40 -0.13 0.95 16 34 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.12 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.13 1.55 6.63 -51.93 -0.34 1.21 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.57 7.00 -51.93 -0.36 1.20 16 40 H 0.03 0.71 7.00 -51.93 -0.36 0.35 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 2.33 6.44 -51.93 -0.33 2.00 16 43 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -31.31 361.84 -8.01 -39.32 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.54 Total: 1.51 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.42 Total: 2.99 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.60 Total: -54.93 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.08 Total: -10.20 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.16 Total: 0.35 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.31 -8.01 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.642 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds