Wall clock time and date at job start Tue Mar 31 2020 18:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.75148 * 2 1 4 4 C 1.53817 * 109.69220 * 120.66833 * 2 1 3 5 5 N 1.46964 * 108.57527 * 169.28860 * 4 2 1 6 6 C 1.34780 * 120.59529 * 124.66829 * 5 4 2 7 7 O 1.21706 * 119.99972 * 175.00486 * 6 5 4 8 8 C 1.46583 * 119.99755 * 354.99972 * 6 5 4 9 9 S 1.75833 * 125.45831 * 48.31042 * 8 6 5 10 10 C 1.70613 * 91.56226 * 179.90995 * 9 8 6 11 11 C 1.33817 * 110.95672 * 0.35584 * 10 9 8 12 12 C 1.36643 * 125.45895 * 228.61448 * 8 6 5 13 13 C 1.50700 * 123.35305 * 359.97438 * 12 8 6 14 14 C 1.47204 * 109.46915 * 85.00145 * 13 12 8 15 15 N 4.95156 * 131.81308 * 15.16159 * 2 1 3 16 16 C 1.46964 * 118.81364 * 304.64597 * 5 4 2 17 17 C 1.53374 * 108.63849 * 55.22429 * 16 5 4 18 18 H 1.08996 * 109.75478 * 190.74984 * 17 16 5 19 19 C 1.53002 * 109.60680 * 70.32243 * 17 16 5 20 20 N 1.46964 * 108.63308 * 310.57929 * 17 16 5 21 21 C 1.36928 * 120.59518 * 235.19710 * 20 17 16 22 22 H 1.08007 * 120.00197 * 119.30976 * 21 20 17 23 23 C 1.38809 * 120.00415 * 299.31619 * 21 20 17 24 24 N 1.31624 * 119.99814 * 344.86134 * 23 21 20 25 25 Si 1.86796 * 120.00607 * 164.86614 * 23 21 20 26 26 H 1.48492 * 109.47556 * 179.97438 * 25 23 21 27 27 H 1.48498 * 109.47121 * 300.00269 * 25 23 21 28 28 H 1.48507 * 109.46894 * 59.99626 * 25 23 21 29 29 H 1.09004 * 109.47475 * 162.24445 * 1 2 3 30 30 H 1.09007 * 109.46962 * 282.24157 * 1 2 3 31 31 H 1.09005 * 109.47166 * 42.24019 * 1 2 3 32 32 H 1.08992 * 109.74347 * 49.49770 * 4 2 1 33 33 H 1.09000 * 109.67473 * 289.03026 * 4 2 1 34 34 H 1.08003 * 124.51863 * 180.11007 * 10 9 8 35 35 H 1.07994 * 122.44594 * 179.70044 * 11 10 9 36 36 H 1.09003 * 109.47483 * 205.00040 * 13 12 8 37 37 H 1.09000 * 109.46991 * 325.00631 * 13 12 8 38 38 H 1.09006 * 109.60721 * 295.48302 * 16 5 4 39 39 H 1.09002 * 109.75279 * 175.05557 * 16 5 4 40 40 H 1.09005 * 109.47232 * 300.85756 * 19 17 16 41 41 H 1.09001 * 109.47143 * 60.85118 * 19 17 16 42 42 H 1.08995 * 109.46936 * 180.86038 * 19 17 16 43 43 H 0.97003 * 120.00233 * 175.11560 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0483 -0.7387 1.2457 5 7 3.4948 -0.9510 1.0960 6 6 4.3533 -0.5154 2.0393 7 8 5.5388 -0.7760 1.9502 8 6 3.8591 0.2721 3.1726 9 16 2.4733 -0.1394 4.1736 10 6 2.6896 1.2575 5.1289 11 6 3.7352 1.9739 4.6996 12 6 4.3979 1.4467 3.6167 13 6 5.5996 2.0989 2.9829 14 6 5.1660 2.9247 1.8440 15 7 4.8312 3.5621 0.9652 16 6 3.9885 -1.6471 -0.1005 17 6 3.4697 -0.9135 -1.3435 18 1 3.6612 -1.5142 -2.2325 19 6 4.1761 0.4374 -1.4746 20 7 2.0232 -0.7012 -1.1938 21 6 1.1510 -1.1436 -2.1522 22 1 0.3913 -1.8680 -1.8980 23 6 1.2432 -0.6613 -3.4505 24 7 1.9510 0.4195 -3.7023 25 14 0.3629 -1.5458 -4.8404 26 1 0.6175 -0.8353 -6.1192 27 1 0.8675 -2.9390 -4.9386 28 1 -1.0969 -1.5662 -4.5681 29 1 -0.3634 -0.9787 -0.3134 30 1 -0.3633 0.2179 1.0044 31 1 -0.3634 0.7608 -0.6909 32 1 1.5451 -1.7010 1.3391 33 1 1.8569 -0.1379 2.1348 34 1 2.0636 1.5296 5.9659 35 1 4.0360 2.8986 5.1692 36 1 6.1013 2.7283 3.7179 37 1 6.2880 1.3298 2.6327 38 1 3.6234 -2.6741 -0.1029 39 1 5.0785 -1.6463 -0.1036 40 1 3.9881 1.0339 -0.5818 41 1 5.2486 0.2773 -1.5853 42 1 3.7948 0.9633 -2.3498 43 1 2.0742 0.7164 -4.6175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880452818.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:34 Heat of formation + Delta-G solvation = 38.310135 kcal Electronic energy + Delta-G solvation = -27644.372425 eV Core-core repulsion = 24009.644293 eV Total energy + Delta-G solvation = -3634.728132 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.37033 -39.58402 -38.54024 -37.36714 -35.67197 -34.31670 -33.48101 -32.31402 -30.17222 -29.70086 -27.77232 -27.05835 -25.56561 -24.78145 -22.89843 -21.97416 -20.65079 -19.89033 -19.25721 -18.36446 -17.97775 -17.30834 -16.95873 -16.78381 -16.33498 -16.08507 -15.79425 -15.34864 -15.28739 -15.04623 -14.72923 -14.50956 -14.38340 -14.10321 -13.69290 -13.64761 -13.59019 -13.37256 -13.06427 -12.96876 -12.83020 -12.75383 -12.66166 -12.40854 -12.33898 -12.25766 -12.21492 -11.88918 -11.77049 -11.72947 -11.37422 -10.96692 -10.48691 -9.86994 -9.65391 -9.33246 -8.29612 -7.61702 -5.76492 -0.39707 0.39198 0.98707 1.43450 1.46547 1.48600 1.54552 1.67006 1.78995 1.84722 2.17161 2.48930 3.18854 3.24601 3.46252 3.52898 3.87746 4.07977 4.11897 4.17560 4.29363 4.37480 4.44110 4.50583 4.56975 4.62774 4.69450 4.70365 4.72868 4.82063 4.85756 5.01316 5.04632 5.12103 5.21976 5.31803 5.37255 5.40721 5.48960 5.64211 5.67488 5.79343 6.40011 6.56616 6.61506 7.02269 7.26236 7.71378 8.51212 9.11717 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.004337 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.230558 B = 6455.009978 C = 6958.897927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.156 3.844 3 H -0.008 1.008 4 C 0.094 3.906 5 N -0.590 5.590 6 C 0.581 3.419 7 O -0.566 6.566 8 C -0.288 4.288 9 S 0.248 5.752 10 C -0.229 4.229 11 C -0.139 4.139 12 C -0.044 4.044 13 C 0.028 3.972 14 C 0.227 3.773 15 N -0.487 5.487 16 C 0.109 3.891 17 C 0.178 3.822 18 H 0.054 0.946 19 C -0.134 4.134 20 N -0.583 5.583 21 C -0.275 4.275 22 H 0.055 0.945 23 C -0.008 4.008 24 N -0.904 5.904 25 Si 0.952 3.048 26 H -0.300 1.300 27 H -0.274 1.274 28 H -0.271 1.271 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.205 0.795 35 H 0.180 0.820 36 H 0.174 0.826 37 H 0.122 0.878 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.019 0.981 41 H 0.033 0.967 42 H 0.053 0.947 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 -0.263 21.992 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 H 0.010 0.990 4 C -0.031 4.031 5 N -0.321 5.321 6 C 0.369 3.631 7 O -0.448 6.448 8 C -0.408 4.408 9 S 0.517 5.483 10 C -0.366 4.366 11 C -0.168 4.168 12 C -0.061 4.061 13 C -0.014 4.014 14 C -0.091 4.091 15 N -0.164 5.164 16 C -0.014 4.014 17 C 0.070 3.930 18 H 0.072 0.928 19 C -0.194 4.194 20 N -0.306 5.306 21 C -0.405 4.405 22 H 0.073 0.927 23 C -0.209 4.209 24 N -0.544 5.544 25 Si 0.779 3.221 26 H -0.227 1.227 27 H -0.199 1.199 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.222 0.778 35 H 0.197 0.803 36 H 0.192 0.808 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.619 -0.524 20.517 20.533 hybrid contribution 0.904 0.899 -1.382 1.880 sum 1.523 0.375 19.135 19.199 Atomic orbital electron populations 1.21587 0.93542 1.02061 1.00599 1.20975 0.94661 0.92082 0.87344 0.99045 1.22822 0.79053 1.01807 0.99429 1.47927 1.07864 1.55949 1.20312 1.17436 0.85380 0.78607 0.81631 1.90736 1.16710 1.59179 1.78143 1.24442 1.06698 1.04129 1.05559 1.83197 1.22275 1.23221 1.19584 1.25794 1.03714 1.00333 1.06786 1.20065 0.96515 1.03358 0.96877 1.19099 0.97409 0.92998 0.96611 1.18279 0.95412 0.97326 0.90339 1.29625 0.92485 0.92874 0.94083 1.81309 1.09668 1.13126 1.12315 1.22146 0.99324 0.95624 0.84350 1.20680 0.84800 0.93326 0.94165 0.92801 1.21938 0.97417 0.99626 1.00375 1.44003 1.00625 1.65331 1.20691 1.18849 1.13549 1.18906 0.89196 0.92744 1.26476 0.97956 0.94450 1.01971 1.70171 1.43219 1.22018 1.18986 0.85651 0.79325 0.78521 0.78607 1.22672 1.19934 1.19620 0.91823 0.90457 0.95176 0.89761 0.88486 0.77829 0.80260 0.80843 0.86027 0.90722 0.90075 0.96229 0.94838 0.92820 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 8.57 71.98 0.62 -3.84 16 2 C 0.16 6.50 3.25 45.18 0.15 6.64 16 3 H -0.01 -0.40 7.38 -2.39 -0.02 -0.42 16 4 C 0.09 3.07 5.42 86.57 0.47 3.54 16 5 N -0.59 -21.03 2.59 -821.94 -2.13 -23.16 16 6 C 0.58 19.62 7.19 86.42 0.62 20.24 16 7 O -0.57 -21.46 15.08 -4.37 -0.07 -21.53 16 8 C -0.29 -7.44 5.43 24.08 0.13 -7.31 16 9 S 0.25 4.44 20.05 -56.49 -1.13 3.31 16 10 C -0.23 -2.87 10.92 66.81 0.73 -2.14 16 11 C -0.14 -1.93 9.96 21.08 0.21 -1.72 16 12 C -0.04 -0.91 5.11 -20.42 -0.10 -1.01 16 13 C 0.03 0.54 5.70 28.04 0.16 0.70 16 14 C 0.23 6.68 15.42 89.44 1.38 8.05 16 15 N -0.49 -18.43 18.54 20.01 0.37 -18.06 16 16 C 0.11 4.24 5.95 86.42 0.51 4.75 16 17 C 0.18 8.21 2.80 45.03 0.13 8.33 16 18 H 0.05 2.69 7.88 -2.39 -0.02 2.67 16 19 C -0.13 -6.57 9.09 71.98 0.65 -5.91 16 20 N -0.58 -27.90 2.39 -649.87 -1.55 -29.45 16 21 C -0.27 -14.15 7.56 84.03 0.64 -13.52 16 22 H 0.06 2.76 6.99 -2.91 -0.02 2.74 16 23 C -0.01 -0.42 5.25 84.86 0.45 0.03 16 24 N -0.90 -52.61 11.65 21.65 0.25 -52.36 16 25 Si 0.95 43.12 29.58 68.60 2.03 45.15 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 29 H 0.06 2.40 6.55 -2.38 -0.02 2.38 16 30 H 0.08 2.17 8.03 -2.38 -0.02 2.15 16 31 H 0.03 1.24 8.14 -2.38 -0.02 1.23 16 32 H 0.08 2.56 8.12 -2.39 -0.02 2.54 16 33 H 0.10 2.69 4.00 -15.44 -0.06 2.63 16 34 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.17 1.49 8.12 -2.39 -0.02 1.47 16 37 H 0.12 2.74 6.63 -2.39 -0.02 2.72 16 38 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 39 H 0.08 3.15 7.00 -2.39 -0.02 3.13 16 40 H 0.02 0.95 7.00 -2.38 -0.02 0.93 16 41 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.05 3.00 6.44 -2.39 -0.02 2.98 16 43 H 0.25 14.22 8.32 -92.71 -0.77 13.45 16 Total: -1.00 -73.32 361.84 5.49 -67.83 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.99 Total: 11.42 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.73 Total: 16.84 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -3.06 Total: -123.03 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.07 Total: -21.53 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.13 Total: 3.31 kcal Total: -73.32 5.49 -67.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452818.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.143 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds