Wall clock time and date at job start Tue Mar 31 2020 18:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.74649 * 2 1 4 4 C 1.53373 * 109.60818 * 239.57597 * 2 1 3 5 5 N 1.46969 * 108.63325 * 190.83078 * 4 2 1 6 6 C 1.34767 * 120.59390 * 235.25015 * 5 4 2 7 7 O 1.21703 * 120.00084 * 184.18562 * 6 5 4 8 8 C 1.46592 * 120.00099 * 4.17859 * 6 5 4 9 9 S 1.75826 * 125.45634 * 43.25041 * 8 6 5 10 10 C 1.70613 * 91.56180 * 179.97438 * 9 8 6 11 11 C 1.33820 * 110.95668 * 0.30310 * 10 9 8 12 12 C 1.36651 * 125.45513 * 223.55479 * 8 6 5 13 13 C 1.50694 * 123.35601 * 359.94071 * 12 8 6 14 14 C 1.47205 * 109.47086 * 85.00063 * 13 12 8 15 15 N 6.67302 * 111.85266 * 238.63735 * 2 1 3 16 16 C 1.46969 * 118.81182 * 55.22532 * 5 4 2 17 17 C 1.53375 * 108.63526 * 304.77640 * 16 5 4 18 18 H 1.08999 * 109.60839 * 289.68044 * 17 16 5 19 19 C 1.53000 * 109.60798 * 169.16989 * 17 16 5 20 20 N 1.46966 * 109.60656 * 120.42924 * 2 1 3 21 21 C 1.36929 * 120.59930 * 354.95292 * 20 2 1 22 22 H 1.08000 * 120.00637 * 127.08629 * 21 20 2 23 23 C 1.38819 * 119.99516 * 307.08801 * 21 20 2 24 24 N 1.31624 * 119.99963 * 337.89952 * 23 21 20 25 25 Si 1.86797 * 119.99770 * 157.90739 * 23 21 20 26 26 H 1.48494 * 109.47575 * 59.99594 * 25 23 21 27 27 H 1.48504 * 109.47085 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47073 * 299.99151 * 25 23 21 29 29 H 1.08993 * 109.46990 * 308.52103 * 1 2 3 30 30 H 1.09001 * 109.46991 * 68.52368 * 1 2 3 31 31 H 1.08996 * 109.46708 * 188.51805 * 1 2 3 32 32 H 1.08999 * 109.61094 * 310.57251 * 4 2 1 33 33 H 1.08997 * 109.61033 * 70.91421 * 4 2 1 34 34 H 1.08003 * 124.52413 * 180.02562 * 10 9 8 35 35 H 1.07997 * 122.45069 * 179.78304 * 11 10 9 36 36 H 1.08995 * 109.47610 * 204.99929 * 13 12 8 37 37 H 1.09000 * 109.47197 * 325.00368 * 13 12 8 38 38 H 1.08995 * 109.60836 * 185.03211 * 16 5 4 39 39 H 1.08998 * 109.60506 * 64.51510 * 16 5 4 40 40 H 1.08997 * 109.47099 * 59.99888 * 19 17 16 41 41 H 1.09004 * 109.46779 * 179.97438 * 19 17 16 42 42 H 1.08999 * 109.46830 * 299.99229 * 19 17 16 43 43 H 0.97000 * 119.99535 * 185.05743 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0448 -0.7316 -1.2458 5 7 3.4909 -0.9488 -1.0989 6 6 4.3493 -0.5124 -2.0417 7 8 5.5362 -0.7643 -1.9475 8 6 3.8533 0.2656 -3.1809 9 16 2.6728 1.5655 -3.0916 10 6 2.7493 1.8136 -4.7779 11 6 3.6067 0.9596 -5.3490 12 6 4.2301 0.0927 -4.4830 13 6 5.2295 -0.9447 -4.9257 14 6 4.5434 -2.2309 -5.1306 15 7 4.0139 -3.2234 -5.2886 16 6 3.9841 -1.6500 0.0948 17 6 3.4693 -0.9184 1.3406 18 1 3.9757 0.0421 1.4361 19 6 3.7371 -1.7698 2.5834 20 7 2.0232 -0.7012 1.1937 21 6 1.1512 -1.1439 2.1521 22 1 1.1776 -2.1752 2.4715 23 6 0.2329 -0.2669 2.7132 24 7 0.4547 1.0300 2.6772 25 14 -1.3172 -0.9274 3.5194 26 1 -0.9470 -1.8260 4.6422 27 1 -2.1263 0.2046 4.0382 28 1 -2.1107 -1.6860 2.5192 29 1 -0.3633 0.6400 0.8040 30 1 -0.3633 0.3763 -0.9563 31 1 -0.3632 -1.0163 0.1522 32 1 1.5385 -1.6922 -1.3413 33 1 1.8513 -0.1265 -2.1315 34 1 2.1783 2.5575 -5.3137 35 1 3.7956 0.9521 -6.4123 36 1 5.6931 -0.6274 -5.8597 37 1 5.9967 -1.0601 -4.1601 38 1 5.0741 -1.6500 0.0948 39 1 3.6158 -2.6759 0.0947 40 1 4.8089 -1.9421 2.6817 41 1 3.3709 -1.2476 3.4673 42 1 3.2227 -2.7258 2.4865 43 1 -0.1486 1.6380 3.1326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880452819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:38 Heat of formation + Delta-G solvation = 62.780098 kcal Electronic energy + Delta-G solvation = -27253.793309 eV Core-core repulsion = 23620.126274 eV Total energy + Delta-G solvation = -3633.667035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.04660 -38.49071 -37.16715 -36.32051 -34.26307 -33.14599 -31.47288 -31.29595 -29.16348 -27.76729 -26.18647 -25.71045 -24.25878 -23.47994 -20.98178 -20.43558 -19.36694 -19.01150 -17.89727 -17.45143 -16.34103 -16.04329 -15.88111 -15.06263 -14.95854 -14.72614 -14.45077 -14.29712 -13.85368 -13.74310 -13.46523 -13.33581 -13.04901 -12.80419 -12.57813 -12.27034 -12.09339 -11.96852 -11.69647 -11.65091 -11.49976 -11.33372 -11.09829 -10.82015 -10.81161 -10.58615 -10.51482 -10.40501 -10.13309 -9.98923 -9.87188 -9.61820 -8.91511 -8.49002 -8.41411 -8.07693 -6.43320 -5.88746 -3.61084 0.49252 1.33955 1.84673 2.23445 2.73908 2.77228 3.11770 3.26812 3.33275 3.34577 3.37611 4.07357 4.33772 4.62987 4.66158 4.93623 5.05458 5.11571 5.19378 5.29345 5.47441 5.61662 5.65241 5.76537 5.87384 5.99992 6.04123 6.05993 6.12637 6.15926 6.28116 6.37652 6.49580 6.53215 6.64269 6.76712 6.86170 7.04401 7.20127 7.30574 7.51590 7.56412 7.73226 7.81504 8.33132 8.51906 9.07638 9.61757 10.38821 11.06735 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.004130 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.397028 B = 6778.699359 C = 7502.265708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.186 3.814 3 H 0.034 0.966 4 C 0.074 3.926 5 N -0.586 5.586 6 C 0.581 3.419 7 O -0.543 6.543 8 C -0.245 4.245 9 S 0.262 5.738 10 C -0.257 4.257 11 C -0.137 4.137 12 C -0.053 4.053 13 C 0.027 3.973 14 C 0.213 3.787 15 N -0.433 5.433 16 C 0.100 3.900 17 C 0.156 3.844 18 H 0.031 0.969 19 C -0.126 4.126 20 N -0.574 5.574 21 C -0.270 4.270 22 H 0.054 0.946 23 C 0.042 3.958 24 N -0.874 5.874 25 Si 0.885 3.115 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.277 1.277 29 H 0.094 0.906 30 H 0.024 0.976 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.135 0.865 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.037 0.963 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 2.969 -13.440 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.079 3.921 3 H 0.051 0.949 4 C -0.051 4.051 5 N -0.315 5.315 6 C 0.367 3.633 7 O -0.423 6.423 8 C -0.366 4.366 9 S 0.532 5.468 10 C -0.394 4.394 11 C -0.168 4.168 12 C -0.070 4.070 13 C -0.015 4.015 14 C -0.105 4.105 15 N -0.110 5.110 16 C -0.023 4.023 17 C 0.049 3.951 18 H 0.048 0.952 19 C -0.184 4.184 20 N -0.299 5.299 21 C -0.400 4.400 22 H 0.072 0.928 23 C -0.161 4.161 24 N -0.513 5.513 25 Si 0.713 3.287 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.203 1.203 29 H 0.113 0.887 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.186 0.814 35 H 0.162 0.838 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.238 2.228 -12.391 13.284 hybrid contribution -0.079 -0.316 -0.808 0.871 sum 4.158 1.912 -13.200 13.971 Atomic orbital electron populations 1.22053 0.94790 1.03195 1.00488 1.20591 0.93985 0.93365 0.84141 0.94866 1.23096 0.79223 1.01808 1.00956 1.47951 1.07514 1.55525 1.20551 1.17016 0.85832 0.79302 0.81118 1.90748 1.15441 1.59252 1.76851 1.24637 1.07466 1.06569 0.97901 1.83846 1.34380 1.26715 1.01867 1.25471 1.06090 1.06362 1.01524 1.19744 0.99038 0.96877 1.01101 1.18775 0.99132 0.98136 0.90950 1.17967 0.95411 0.82706 1.05389 1.28956 0.93942 0.94457 0.93192 1.81202 1.08703 1.11969 1.09125 1.22433 0.99516 0.95755 0.84619 1.20886 0.87267 0.95581 0.91351 0.95176 1.21634 0.98273 1.00046 0.98464 1.43963 0.99430 1.67520 1.18963 1.18603 1.11795 0.92753 1.16843 0.92817 1.25538 0.99781 0.95178 0.95586 1.70062 1.36749 1.01911 1.42602 0.86696 0.83964 0.78425 0.79656 1.20412 1.21477 1.20314 0.88727 0.95684 0.92693 0.91260 0.91051 0.81376 0.83783 0.86096 0.84766 0.89831 0.91735 0.94352 0.91322 0.92817 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 7.81 37.16 0.29 -2.77 16 2 C 0.19 3.90 3.26 -67.48 -0.22 3.68 16 3 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 4 C 0.07 1.34 5.48 -3.59 -0.02 1.32 16 5 N -0.59 -10.71 2.95 -174.06 -0.51 -11.23 16 6 C 0.58 10.10 7.27 -12.90 -0.09 10.01 16 7 O -0.54 -10.22 14.82 5.19 0.08 -10.14 16 8 C -0.24 -3.50 5.46 -36.79 -0.20 -3.70 16 9 S 0.26 3.24 20.00 -107.50 -2.15 1.09 16 10 C -0.26 -2.45 10.92 29.18 0.32 -2.13 16 11 C -0.14 -1.29 9.96 -41.41 -0.41 -1.70 16 12 C -0.05 -0.62 5.11 -105.48 -0.54 -1.16 16 13 C 0.03 0.27 5.70 -30.67 -0.17 0.09 16 14 C 0.21 2.78 15.42 -20.76 -0.32 2.46 16 15 N -0.43 -6.88 18.54 42.15 0.78 -6.09 16 16 C 0.10 1.86 5.90 -3.59 -0.02 1.84 16 17 C 0.16 3.22 3.65 -67.48 -0.25 2.97 16 18 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 19 C -0.13 -2.38 8.18 37.16 0.30 -2.08 16 20 N -0.57 -13.13 2.75 -157.01 -0.43 -13.56 16 21 C -0.27 -6.67 6.66 -15.06 -0.10 -6.77 16 22 H 0.05 1.36 7.14 -52.49 -0.37 0.98 16 23 C 0.04 1.05 3.21 -17.43 -0.06 0.99 16 24 N -0.87 -23.04 11.73 55.49 0.65 -22.39 16 25 Si 0.88 19.83 29.61 -169.99 -5.03 14.80 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.09 2.22 4.95 -51.93 -0.26 1.96 16 30 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 31 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 32 H 0.07 1.29 8.12 -51.93 -0.42 0.86 16 33 H 0.07 1.14 3.92 -30.27 -0.12 1.02 16 34 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 0.68 8.12 -51.93 -0.42 0.26 16 37 H 0.13 1.47 6.45 -51.93 -0.34 1.13 16 38 H 0.08 1.51 7.01 -51.93 -0.36 1.15 16 39 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 1.43 7.75 -51.93 -0.40 1.02 16 42 H 0.05 1.01 7.42 -51.93 -0.39 0.62 16 43 H 0.26 6.62 8.32 -40.82 -0.34 6.28 16 LS Contribution 359.19 15.07 5.41 5.41 Total: -1.00 -29.69 359.19 -8.26 -37.95 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.56 Total: 1.11 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.49 Total: 3.06 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.49 Total: -53.27 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -2.15 Total: 1.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.69 -8.26 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.733 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds