Wall clock time and date at job start Tue Mar 31 2020 18:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.74649 * 2 1 4 4 C 1.53373 * 109.60818 * 239.57597 * 2 1 3 5 5 N 1.46969 * 108.63325 * 190.83078 * 4 2 1 6 6 C 1.34767 * 120.59390 * 235.25015 * 5 4 2 7 7 O 1.21703 * 120.00084 * 184.18562 * 6 5 4 8 8 C 1.46592 * 120.00099 * 4.17859 * 6 5 4 9 9 S 1.75826 * 125.45634 * 43.25041 * 8 6 5 10 10 C 1.70613 * 91.56180 * 179.97438 * 9 8 6 11 11 C 1.33820 * 110.95668 * 0.30310 * 10 9 8 12 12 C 1.36651 * 125.45513 * 223.55479 * 8 6 5 13 13 C 1.50694 * 123.35601 * 359.94071 * 12 8 6 14 14 C 1.47205 * 109.47086 * 85.00063 * 13 12 8 15 15 N 6.67302 * 111.85266 * 238.63735 * 2 1 3 16 16 C 1.46969 * 118.81182 * 55.22532 * 5 4 2 17 17 C 1.53375 * 108.63526 * 304.77640 * 16 5 4 18 18 H 1.08999 * 109.60839 * 289.68044 * 17 16 5 19 19 C 1.53000 * 109.60798 * 169.16989 * 17 16 5 20 20 N 1.46966 * 109.60656 * 120.42924 * 2 1 3 21 21 C 1.36929 * 120.59930 * 354.95292 * 20 2 1 22 22 H 1.08000 * 120.00637 * 127.08629 * 21 20 2 23 23 C 1.38819 * 119.99516 * 307.08801 * 21 20 2 24 24 N 1.31624 * 119.99963 * 337.89952 * 23 21 20 25 25 Si 1.86797 * 119.99770 * 157.90739 * 23 21 20 26 26 H 1.48494 * 109.47575 * 59.99594 * 25 23 21 27 27 H 1.48504 * 109.47085 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47073 * 299.99151 * 25 23 21 29 29 H 1.08993 * 109.46990 * 308.52103 * 1 2 3 30 30 H 1.09001 * 109.46991 * 68.52368 * 1 2 3 31 31 H 1.08996 * 109.46708 * 188.51805 * 1 2 3 32 32 H 1.08999 * 109.61094 * 310.57251 * 4 2 1 33 33 H 1.08997 * 109.61033 * 70.91421 * 4 2 1 34 34 H 1.08003 * 124.52413 * 180.02562 * 10 9 8 35 35 H 1.07997 * 122.45069 * 179.78304 * 11 10 9 36 36 H 1.08995 * 109.47610 * 204.99929 * 13 12 8 37 37 H 1.09000 * 109.47197 * 325.00368 * 13 12 8 38 38 H 1.08995 * 109.60836 * 185.03211 * 16 5 4 39 39 H 1.08998 * 109.60506 * 64.51510 * 16 5 4 40 40 H 1.08997 * 109.47099 * 59.99888 * 19 17 16 41 41 H 1.09004 * 109.46779 * 179.97438 * 19 17 16 42 42 H 1.08999 * 109.46830 * 299.99229 * 19 17 16 43 43 H 0.97000 * 119.99535 * 185.05743 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0448 -0.7316 -1.2458 5 7 3.4909 -0.9488 -1.0989 6 6 4.3493 -0.5124 -2.0417 7 8 5.5362 -0.7643 -1.9475 8 6 3.8533 0.2656 -3.1809 9 16 2.6728 1.5655 -3.0916 10 6 2.7493 1.8136 -4.7779 11 6 3.6067 0.9596 -5.3490 12 6 4.2301 0.0927 -4.4830 13 6 5.2295 -0.9447 -4.9257 14 6 4.5434 -2.2309 -5.1306 15 7 4.0139 -3.2234 -5.2886 16 6 3.9841 -1.6500 0.0948 17 6 3.4693 -0.9184 1.3406 18 1 3.9757 0.0421 1.4361 19 6 3.7371 -1.7698 2.5834 20 7 2.0232 -0.7012 1.1937 21 6 1.1512 -1.1439 2.1521 22 1 1.1776 -2.1752 2.4715 23 6 0.2329 -0.2669 2.7132 24 7 0.4547 1.0300 2.6772 25 14 -1.3172 -0.9274 3.5194 26 1 -0.9470 -1.8260 4.6422 27 1 -2.1263 0.2046 4.0382 28 1 -2.1107 -1.6860 2.5192 29 1 -0.3633 0.6400 0.8040 30 1 -0.3633 0.3763 -0.9563 31 1 -0.3632 -1.0163 0.1522 32 1 1.5385 -1.6922 -1.3413 33 1 1.8513 -0.1265 -2.1315 34 1 2.1783 2.5575 -5.3137 35 1 3.7956 0.9521 -6.4123 36 1 5.6931 -0.6274 -5.8597 37 1 5.9967 -1.0601 -4.1601 38 1 5.0741 -1.6500 0.0948 39 1 3.6158 -2.6759 0.0947 40 1 4.8089 -1.9421 2.6817 41 1 3.3709 -1.2476 3.4673 42 1 3.2227 -2.7258 2.4865 43 1 -0.1486 1.6380 3.1326 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880452819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:38 Heat of formation + Delta-G solvation = 46.189201 kcal Electronic energy + Delta-G solvation = -27254.512744 eV Core-core repulsion = 23620.126274 eV Total energy + Delta-G solvation = -3634.386470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.35913 -39.63908 -38.58806 -37.36901 -35.87271 -34.77294 -33.10335 -32.33063 -30.31455 -29.42919 -27.63772 -27.31548 -25.67527 -24.64987 -22.28950 -22.05249 -20.96301 -19.97726 -19.21566 -18.39601 -17.94195 -17.52938 -16.94878 -16.75394 -16.35341 -16.18255 -15.82567 -15.39918 -15.30713 -14.94457 -14.72787 -14.68292 -14.42102 -13.97778 -13.79039 -13.49649 -13.41331 -13.31650 -13.25540 -13.01270 -12.86768 -12.74708 -12.51626 -12.35292 -12.31956 -12.25787 -12.15624 -11.83273 -11.70805 -11.62033 -11.53108 -11.02416 -10.22890 -9.88796 -9.68224 -9.38365 -8.32293 -7.76943 -5.55904 -0.44779 0.38283 1.00034 1.40562 1.46050 1.50349 1.54710 1.68019 1.76941 1.88341 2.06502 2.48811 3.17616 3.21558 3.42688 3.50095 3.86262 4.05753 4.12642 4.15665 4.30320 4.36871 4.43708 4.46467 4.55202 4.62881 4.70754 4.76141 4.78920 4.86986 4.94388 4.95271 5.02712 5.17203 5.26881 5.34365 5.37239 5.38284 5.59108 5.60423 5.75159 5.89839 6.34973 6.53592 6.58194 6.97556 7.22175 7.76762 8.51129 9.13440 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016243 B = 0.004130 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.397028 B = 6778.699359 C = 7502.265708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.188 3.812 3 H 0.011 0.989 4 C 0.089 3.911 5 N -0.598 5.598 6 C 0.581 3.419 7 O -0.564 6.564 8 C -0.289 4.289 9 S 0.221 5.779 10 C -0.228 4.228 11 C -0.136 4.136 12 C -0.034 4.034 13 C 0.028 3.972 14 C 0.235 3.765 15 N -0.488 5.488 16 C 0.111 3.889 17 C 0.153 3.847 18 H 0.006 0.994 19 C -0.115 4.115 20 N -0.590 5.590 21 C -0.271 4.271 22 H 0.047 0.953 23 C 0.010 3.990 24 N -0.904 5.904 25 Si 0.935 3.065 26 H -0.278 1.278 27 H -0.292 1.292 28 H -0.273 1.273 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.202 0.798 35 H 0.186 0.814 36 H 0.175 0.825 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 3.385 -16.451 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 H 0.029 0.971 4 C -0.036 4.036 5 N -0.327 5.327 6 C 0.370 3.630 7 O -0.446 6.446 8 C -0.409 4.409 9 S 0.491 5.509 10 C -0.366 4.366 11 C -0.165 4.165 12 C -0.052 4.052 13 C -0.014 4.014 14 C -0.082 4.082 15 N -0.166 5.166 16 C -0.013 4.013 17 C 0.046 3.954 18 H 0.023 0.977 19 C -0.173 4.173 20 N -0.314 5.314 21 C -0.401 4.401 22 H 0.064 0.936 23 C -0.191 4.191 24 N -0.544 5.544 25 Si 0.762 3.238 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.199 1.199 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.219 0.781 35 H 0.203 0.797 36 H 0.193 0.807 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.480 2.636 -15.416 16.268 hybrid contribution -0.063 -0.362 0.031 0.369 sum 4.416 2.274 -15.385 16.167 Atomic orbital electron populations 1.21922 0.94681 1.01950 1.01250 1.20524 0.94109 0.92381 0.84894 0.97150 1.22848 0.79100 1.01332 1.00348 1.48019 1.07741 1.56081 1.20902 1.17437 0.85392 0.78735 0.81481 1.90718 1.16194 1.60108 1.77535 1.24414 1.10319 1.08329 0.97865 1.83984 1.34693 1.27045 1.05148 1.25846 1.05310 1.06218 0.99178 1.20122 0.98100 0.95611 1.02706 1.19160 0.98059 0.97829 0.90178 1.18281 0.94511 0.80829 1.07747 1.29469 0.92757 0.94472 0.91502 1.81228 1.10440 1.13681 1.11256 1.22184 0.99575 0.95423 0.84145 1.20949 0.86132 0.95022 0.93298 0.97665 1.21519 1.00148 0.99150 0.96510 1.44213 1.00143 1.67597 1.19495 1.18680 1.12027 0.92393 1.16982 0.93579 1.25982 1.01649 0.95181 0.96246 1.70162 1.37545 1.02819 1.43905 0.85898 0.81324 0.77645 0.78899 1.20335 1.21842 1.19860 0.91292 0.92522 0.93745 0.91877 0.88603 0.78061 0.79693 0.80726 0.85634 0.89397 0.91623 0.91368 0.93775 0.92813 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.86 7.81 71.98 0.56 -5.30 16 2 C 0.19 8.02 3.26 45.03 0.15 8.17 16 3 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 4 C 0.09 3.20 5.48 86.41 0.47 3.68 16 5 N -0.60 -22.02 2.95 -822.81 -2.43 -24.45 16 6 C 0.58 20.04 7.27 86.42 0.63 20.66 16 7 O -0.56 -21.13 14.82 -4.36 -0.06 -21.20 16 8 C -0.29 -7.81 5.46 24.08 0.13 -7.68 16 9 S 0.22 5.11 20.00 -56.49 -1.13 3.98 16 10 C -0.23 -3.35 10.92 66.81 0.73 -2.62 16 11 C -0.14 -1.87 9.96 21.08 0.21 -1.66 16 12 C -0.03 -0.68 5.11 -20.42 -0.10 -0.78 16 13 C 0.03 0.45 5.70 28.04 0.16 0.61 16 14 C 0.24 5.62 15.42 89.44 1.38 7.00 16 15 N -0.49 -14.93 18.54 20.01 0.37 -14.56 16 16 C 0.11 4.17 5.90 86.42 0.51 4.68 16 17 C 0.15 6.49 3.65 45.03 0.16 6.65 16 18 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 19 C -0.12 -4.43 8.18 71.98 0.59 -3.84 16 20 N -0.59 -27.73 2.75 -650.66 -1.79 -29.52 16 21 C -0.27 -13.69 6.66 84.04 0.56 -13.13 16 22 H 0.05 2.38 7.14 -2.91 -0.02 2.36 16 23 C 0.01 0.49 3.21 84.86 0.27 0.76 16 24 N -0.90 -49.04 11.73 21.65 0.25 -48.79 16 25 Si 0.93 41.34 29.61 68.60 2.03 43.37 16 26 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 27 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 29 H 0.07 3.29 4.95 -2.39 -0.01 3.28 16 30 H 0.06 1.94 8.13 -2.39 -0.02 1.92 16 31 H 0.04 1.91 7.50 -2.39 -0.02 1.89 16 32 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 33 H 0.10 3.00 3.92 -16.16 -0.06 2.94 16 34 H 0.20 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.18 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.13 2.45 6.45 -2.39 -0.02 2.43 16 38 H 0.09 3.21 7.01 -2.39 -0.02 3.20 16 39 H 0.07 2.44 8.12 -2.39 -0.02 2.42 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.04 1.88 7.75 -2.38 -0.02 1.86 16 42 H 0.05 2.04 7.42 -2.39 -0.02 2.02 16 43 H 0.25 13.45 8.32 -92.71 -0.77 12.68 16 Total: -1.00 -67.58 359.19 4.64 -62.94 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.98 Total: 11.03 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.41 Total: 17.19 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -3.59 Total: -117.31 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.06 Total: -21.20 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -1.13 Total: 3.98 kcal Total: -67.58 4.64 -62.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.131 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds