Wall clock time and date at job start Tue Mar 31 2020 18:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.60779 * 2 1 4 4 C 1.53367 * 109.61094 * 239.65635 * 2 1 3 5 5 N 1.46962 * 108.63523 * 190.83211 * 4 2 1 6 6 C 1.34782 * 120.59256 * 235.20516 * 5 4 2 7 7 O 1.21697 * 119.99491 * 184.58920 * 6 5 4 8 8 C 1.46574 * 120.00131 * 4.58831 * 6 5 4 9 9 S 1.75826 * 125.45992 * 309.90747 * 8 6 5 10 10 C 1.70612 * 91.56627 * 179.97438 * 9 8 6 11 11 C 1.33815 * 110.95534 * 0.02562 * 10 9 8 12 12 C 1.36651 * 125.46010 * 129.88069 * 8 6 5 13 13 C 1.50701 * 123.34566 * 359.75285 * 12 8 6 14 14 C 1.47198 * 109.47073 * 85.00039 * 13 12 8 15 15 N 7.45233 * 146.81264 * 286.68812 * 2 1 3 16 16 C 1.46966 * 118.81372 * 55.47681 * 5 4 2 17 17 C 1.53818 * 108.39730 * 304.48846 * 16 5 4 18 18 H 1.08994 * 109.66994 * 169.38195 * 17 16 5 19 19 C 1.53002 * 109.73724 * 289.84415 * 17 16 5 20 20 N 1.46960 * 108.57875 * 49.63442 * 17 16 5 21 21 C 1.36934 * 120.59263 * 124.67294 * 20 17 16 22 22 H 1.08002 * 120.00280 * 209.39644 * 21 20 17 23 23 C 1.38811 * 120.00294 * 29.39524 * 21 20 17 24 24 N 1.31621 * 120.00002 * 16.61521 * 23 21 20 25 25 Si 1.86798 * 120.00185 * 196.61219 * 23 21 20 26 26 H 1.48501 * 109.47312 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46821 * 120.00126 * 25 23 21 28 28 H 1.48497 * 109.47184 * 240.00008 * 25 23 21 29 29 H 1.08998 * 109.46823 * 180.34433 * 1 2 3 30 30 H 1.08996 * 109.47227 * 300.34582 * 1 2 3 31 31 H 1.09003 * 109.46895 * 60.34107 * 1 2 3 32 32 H 1.08999 * 109.60749 * 71.08678 * 4 2 1 33 33 H 1.09001 * 109.60709 * 310.57864 * 4 2 1 34 34 H 1.08003 * 124.52550 * 179.97438 * 10 9 8 35 35 H 1.07996 * 122.45460 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.46899 * 204.99485 * 13 12 8 37 37 H 1.08997 * 109.47519 * 324.99328 * 13 12 8 38 38 H 1.09004 * 109.60395 * 64.26435 * 16 5 4 39 39 H 1.08994 * 109.61203 * 184.77799 * 16 5 4 40 40 H 1.09007 * 109.46538 * 179.15908 * 19 17 16 41 41 H 1.08999 * 109.47105 * 299.15493 * 19 17 16 42 42 H 1.08997 * 109.47241 * 59.15839 * 19 17 16 43 43 H 0.96995 * 120.00195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 6 2.0448 -0.7298 -1.2468 5 7 3.4909 -0.9473 -1.1002 6 6 4.3493 -0.5103 -2.0429 7 8 5.5351 -0.7686 -1.9527 8 6 3.8546 0.2761 -3.1767 9 16 2.4978 -0.1605 -4.2062 10 6 2.6921 1.2532 -5.1414 11 6 3.7155 1.9882 -4.6908 12 6 4.3737 1.4662 -3.6026 13 6 5.5473 2.1421 -2.9415 14 6 6.8000 1.5942 -3.4867 15 7 7.7668 1.1714 -3.9074 16 6 3.9837 -1.6551 0.0898 17 6 3.4693 -0.9203 1.3394 18 1 3.6602 -1.5255 2.2255 19 6 4.1801 0.4278 1.4754 20 7 2.0233 -0.7029 1.1927 21 6 1.1511 -1.1469 2.1505 22 1 0.1446 -1.4267 1.8764 23 6 1.5605 -1.2373 3.4738 24 7 2.6448 -0.6062 3.8718 25 14 0.5726 -2.2546 4.6897 26 1 -0.5932 -2.8597 3.9969 27 1 1.4306 -3.3313 5.2463 28 1 0.0955 -1.3821 5.7925 29 1 -0.3633 -1.0276 0.0062 30 1 -0.3633 0.5192 0.8868 31 1 -0.3633 0.5085 -0.8931 32 1 1.8541 -0.1221 -2.1313 33 1 1.5384 -1.6902 -1.3436 34 1 2.0723 1.5190 -5.9850 35 1 4.0027 2.9236 -5.1478 36 1 5.5052 3.2141 -3.1346 37 1 5.5105 1.9649 -1.8667 38 1 3.6121 -2.6798 0.0859 39 1 5.0736 -1.6585 0.0883 40 1 3.8016 0.9511 2.3535 41 1 5.2522 0.2639 1.5840 42 1 3.9927 1.0287 0.5855 43 1 2.9307 -0.6690 4.7965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880452820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:43 Heat of formation + Delta-G solvation = 61.917880 kcal Electronic energy + Delta-G solvation = -27381.635822 eV Core-core repulsion = 23747.931398 eV Total energy + Delta-G solvation = -3633.704424 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.07388 -38.49937 -37.16520 -36.17362 -34.11573 -32.80769 -31.59591 -31.31386 -28.98755 -27.94914 -26.38418 -25.59471 -24.05794 -23.59589 -21.44115 -20.58471 -19.22256 -18.73013 -17.98639 -17.32856 -16.50014 -16.04503 -15.66829 -15.19219 -14.89854 -14.74838 -14.34258 -14.09981 -13.77523 -13.65431 -13.47421 -13.22697 -13.04946 -12.81423 -12.50343 -12.35017 -12.05144 -11.96742 -11.77517 -11.57408 -11.48455 -11.26827 -11.08051 -10.99771 -10.80699 -10.66706 -10.63460 -10.19805 -10.11552 -9.86973 -9.76009 -9.50003 -8.93775 -8.59677 -8.50890 -8.25294 -6.69470 -5.86032 -3.31427 0.48186 1.23647 1.74310 2.20516 2.93028 2.94607 3.05300 3.32160 3.39487 3.41914 3.42954 4.17694 4.41005 4.61867 4.63317 4.95133 5.06591 5.11738 5.26933 5.29895 5.41910 5.56324 5.57881 5.72489 5.81104 5.93586 6.05978 6.08418 6.12679 6.17445 6.21654 6.30012 6.42728 6.56295 6.69956 6.82070 6.87002 6.95953 7.01412 7.51941 7.60256 7.69611 7.73664 7.81521 8.36406 8.37961 9.12636 9.74332 10.31078 11.20893 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.004030 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.196983 B = 6945.979275 C = 7859.992747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.157 3.843 3 H 0.033 0.967 4 C 0.082 3.918 5 N -0.582 5.582 6 C 0.576 3.424 7 O -0.533 6.533 8 C -0.232 4.232 9 S 0.231 5.769 10 C -0.252 4.252 11 C -0.131 4.131 12 C -0.056 4.056 13 C 0.036 3.964 14 C 0.222 3.778 15 N -0.433 5.433 16 C 0.093 3.907 17 C 0.180 3.820 18 H 0.107 0.893 19 C -0.139 4.139 20 N -0.580 5.580 21 C -0.254 4.254 22 H 0.072 0.928 23 C 0.007 3.993 24 N -0.896 5.896 25 Si 0.899 3.101 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.029 0.971 42 H 0.022 0.978 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 5.484 -15.002 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.050 3.950 3 H 0.050 0.950 4 C -0.044 4.044 5 N -0.313 5.313 6 C 0.361 3.639 7 O -0.412 6.412 8 C -0.353 4.353 9 S 0.500 5.500 10 C -0.389 4.389 11 C -0.162 4.162 12 C -0.071 4.071 13 C -0.006 4.006 14 C -0.097 4.097 15 N -0.109 5.109 16 C -0.030 4.030 17 C 0.072 3.928 18 H 0.125 0.875 19 C -0.198 4.198 20 N -0.302 5.302 21 C -0.384 4.384 22 H 0.090 0.910 23 C -0.192 4.192 24 N -0.540 5.540 25 Si 0.729 3.271 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.218 1.218 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.186 0.814 35 H 0.164 0.836 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.040 3.468 -15.466 15.980 hybrid contribution -0.040 0.944 0.811 1.245 sum -2.080 4.411 -14.654 15.445 Atomic orbital electron populations 1.21773 0.95152 1.01790 1.00685 1.20730 0.93316 0.93970 0.87008 0.94970 1.22787 0.79872 1.01307 1.00399 1.47945 1.07138 1.55203 1.20976 1.17021 0.85963 0.79627 0.81240 1.90839 1.15601 1.57856 1.76904 1.24661 1.04013 1.01844 1.04796 1.83318 1.26163 1.20801 1.19678 1.25295 1.04739 1.01650 1.07206 1.19767 0.96846 1.02410 0.97168 1.18801 0.97428 0.94141 0.96777 1.17762 0.82265 0.99601 1.00934 1.28595 0.94071 0.93479 0.93523 1.81135 1.12081 1.08347 1.09374 1.22691 0.99681 0.95494 0.85148 1.20829 0.82930 0.94993 0.94007 0.87493 1.21981 0.97677 0.99280 1.00862 1.44159 1.01890 1.64328 1.19867 1.19196 0.95853 1.36957 0.86367 0.91034 1.25065 0.98046 0.99289 0.96832 1.69995 1.25586 1.42329 1.16045 0.86284 0.79535 0.79950 0.81308 1.20323 1.21635 1.21817 0.92461 0.91502 0.94036 0.90754 0.91193 0.81363 0.83610 0.86129 0.86297 0.91956 0.89924 0.90477 0.95229 0.95928 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.95 37.16 0.30 -1.90 16 2 C 0.16 2.86 3.22 -67.48 -0.22 2.65 16 3 H 0.03 0.63 7.41 -51.93 -0.38 0.24 16 4 C 0.08 1.28 5.46 -3.60 -0.02 1.26 16 5 N -0.58 -10.03 2.58 -173.79 -0.45 -10.48 16 6 C 0.58 9.79 6.92 -12.90 -0.09 9.71 16 7 O -0.53 -10.67 15.54 5.19 0.08 -10.58 16 8 C -0.23 -3.16 5.35 -36.80 -0.20 -3.36 16 9 S 0.23 2.40 20.21 -107.50 -2.17 0.23 16 10 C -0.25 -2.14 10.92 29.18 0.32 -1.82 16 11 C -0.13 -1.18 9.96 -41.41 -0.41 -1.59 16 12 C -0.06 -0.64 5.11 -105.47 -0.54 -1.18 16 13 C 0.04 0.38 5.44 -30.67 -0.17 0.22 16 14 C 0.22 3.14 14.80 -20.76 -0.31 2.84 16 15 N -0.43 -7.36 18.54 42.15 0.78 -6.58 16 16 C 0.09 1.77 5.99 -3.36 -0.02 1.75 16 17 C 0.18 3.88 2.35 -67.25 -0.16 3.73 16 18 H 0.11 2.65 6.05 -51.93 -0.31 2.33 16 19 C -0.14 -2.94 8.96 37.16 0.33 -2.60 16 20 N -0.58 -12.74 2.68 -156.76 -0.42 -13.16 16 21 C -0.25 -6.18 8.58 -15.06 -0.13 -6.31 16 22 H 0.07 1.70 6.22 -52.49 -0.33 1.38 16 23 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 24 N -0.90 -23.66 10.14 55.49 0.56 -23.10 16 25 Si 0.90 20.30 29.59 -169.99 -5.03 15.27 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.06 0.93 7.32 -51.93 -0.38 0.55 16 30 H 0.07 1.19 7.72 -51.93 -0.40 0.79 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.98 4.15 -34.35 -0.14 0.84 16 33 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 34 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.76 8.12 -51.93 -0.42 0.34 16 37 H 0.12 1.37 7.79 -51.93 -0.40 0.96 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.61 6.99 -51.93 -0.36 1.25 16 40 H 0.08 1.84 7.16 -51.92 -0.37 1.47 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.44 7.02 -51.93 -0.36 0.08 16 43 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 359.47 15.07 5.42 5.42 Total: -1.00 -30.48 359.47 -8.17 -38.65 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.54 Total: 0.87 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.40 Total: 3.47 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.47 Total: -53.32 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Atomic # 16 Polarization: 2.40 SS G_CDS: -2.17 Total: 0.23 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.48 -8.17 -38.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.570 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds