Wall clock time and date at job start Tue Mar 31 2020 18:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.60779 * 2 1 4 4 C 1.53367 * 109.61094 * 239.65635 * 2 1 3 5 5 N 1.46962 * 108.63523 * 190.83211 * 4 2 1 6 6 C 1.34782 * 120.59256 * 235.20516 * 5 4 2 7 7 O 1.21697 * 119.99491 * 184.58920 * 6 5 4 8 8 C 1.46574 * 120.00131 * 4.58831 * 6 5 4 9 9 S 1.75826 * 125.45992 * 309.90747 * 8 6 5 10 10 C 1.70612 * 91.56627 * 179.97438 * 9 8 6 11 11 C 1.33815 * 110.95534 * 0.02562 * 10 9 8 12 12 C 1.36651 * 125.46010 * 129.88069 * 8 6 5 13 13 C 1.50701 * 123.34566 * 359.75285 * 12 8 6 14 14 C 1.47198 * 109.47073 * 85.00039 * 13 12 8 15 15 N 7.45233 * 146.81264 * 286.68812 * 2 1 3 16 16 C 1.46966 * 118.81372 * 55.47681 * 5 4 2 17 17 C 1.53818 * 108.39730 * 304.48846 * 16 5 4 18 18 H 1.08994 * 109.66994 * 169.38195 * 17 16 5 19 19 C 1.53002 * 109.73724 * 289.84415 * 17 16 5 20 20 N 1.46960 * 108.57875 * 49.63442 * 17 16 5 21 21 C 1.36934 * 120.59263 * 124.67294 * 20 17 16 22 22 H 1.08002 * 120.00280 * 209.39644 * 21 20 17 23 23 C 1.38811 * 120.00294 * 29.39524 * 21 20 17 24 24 N 1.31621 * 120.00002 * 16.61521 * 23 21 20 25 25 Si 1.86798 * 120.00185 * 196.61219 * 23 21 20 26 26 H 1.48501 * 109.47312 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46821 * 120.00126 * 25 23 21 28 28 H 1.48497 * 109.47184 * 240.00008 * 25 23 21 29 29 H 1.08998 * 109.46823 * 180.34433 * 1 2 3 30 30 H 1.08996 * 109.47227 * 300.34582 * 1 2 3 31 31 H 1.09003 * 109.46895 * 60.34107 * 1 2 3 32 32 H 1.08999 * 109.60749 * 71.08678 * 4 2 1 33 33 H 1.09001 * 109.60709 * 310.57864 * 4 2 1 34 34 H 1.08003 * 124.52550 * 179.97438 * 10 9 8 35 35 H 1.07996 * 122.45460 * 180.02562 * 11 10 9 36 36 H 1.09002 * 109.46899 * 204.99485 * 13 12 8 37 37 H 1.08997 * 109.47519 * 324.99328 * 13 12 8 38 38 H 1.09004 * 109.60395 * 64.26435 * 16 5 4 39 39 H 1.08994 * 109.61203 * 184.77799 * 16 5 4 40 40 H 1.09007 * 109.46538 * 179.15908 * 19 17 16 41 41 H 1.08999 * 109.47105 * 299.15493 * 19 17 16 42 42 H 1.08997 * 109.47241 * 59.15839 * 19 17 16 43 43 H 0.96995 * 120.00195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8959 1.0268 0.0000 4 6 2.0448 -0.7298 -1.2468 5 7 3.4909 -0.9473 -1.1002 6 6 4.3493 -0.5103 -2.0429 7 8 5.5351 -0.7686 -1.9527 8 6 3.8546 0.2761 -3.1767 9 16 2.4978 -0.1605 -4.2062 10 6 2.6921 1.2532 -5.1414 11 6 3.7155 1.9882 -4.6908 12 6 4.3737 1.4662 -3.6026 13 6 5.5473 2.1421 -2.9415 14 6 6.8000 1.5942 -3.4867 15 7 7.7668 1.1714 -3.9074 16 6 3.9837 -1.6551 0.0898 17 6 3.4693 -0.9203 1.3394 18 1 3.6602 -1.5255 2.2255 19 6 4.1801 0.4278 1.4754 20 7 2.0233 -0.7029 1.1927 21 6 1.1511 -1.1469 2.1505 22 1 0.1446 -1.4267 1.8764 23 6 1.5605 -1.2373 3.4738 24 7 2.6448 -0.6062 3.8718 25 14 0.5726 -2.2546 4.6897 26 1 -0.5932 -2.8597 3.9969 27 1 1.4306 -3.3313 5.2463 28 1 0.0955 -1.3821 5.7925 29 1 -0.3633 -1.0276 0.0062 30 1 -0.3633 0.5192 0.8868 31 1 -0.3633 0.5085 -0.8931 32 1 1.8541 -0.1221 -2.1313 33 1 1.5384 -1.6902 -1.3436 34 1 2.0723 1.5190 -5.9850 35 1 4.0027 2.9236 -5.1478 36 1 5.5052 3.2141 -3.1346 37 1 5.5105 1.9649 -1.8667 38 1 3.6121 -2.6798 0.0859 39 1 5.0736 -1.6585 0.0883 40 1 3.8016 0.9511 2.3535 41 1 5.2522 0.2639 1.5840 42 1 3.9927 1.0287 0.5855 43 1 2.9307 -0.6690 4.7965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880452820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:42 Heat of formation + Delta-G solvation = 44.730679 kcal Electronic energy + Delta-G solvation = -27382.381115 eV Core-core repulsion = 23747.931398 eV Total energy + Delta-G solvation = -3634.449717 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35490 -39.57877 -38.55185 -37.28700 -35.69386 -34.33196 -33.21489 -32.30397 -30.11230 -29.61841 -27.75498 -27.02342 -25.51899 -24.75197 -22.79450 -21.91823 -20.61350 -19.85339 -19.21161 -18.32556 -17.95282 -17.26816 -16.95904 -16.85003 -16.17149 -15.88489 -15.74832 -15.32001 -15.25100 -15.00478 -14.72430 -14.41808 -14.30909 -14.08668 -13.63592 -13.54649 -13.48709 -13.34416 -13.03164 -12.86552 -12.80804 -12.74497 -12.50159 -12.34477 -12.27922 -12.22919 -11.95041 -11.84847 -11.70222 -11.49821 -11.38887 -10.97561 -10.44909 -9.87534 -9.66327 -9.34324 -8.48518 -7.76356 -5.22492 -0.37519 0.37460 1.00124 1.40517 1.49855 1.54881 1.61643 1.77631 1.85377 1.92958 2.13558 2.57667 3.23318 3.38616 3.50418 3.56696 3.87730 4.13929 4.15623 4.21554 4.34274 4.39464 4.48691 4.60038 4.62240 4.68863 4.70021 4.72973 4.84001 4.89742 4.99621 5.04709 5.11539 5.20473 5.29910 5.35024 5.38324 5.46015 5.60876 5.75228 5.77815 5.88705 6.44023 6.49688 6.62913 7.06652 7.24597 7.93767 8.46579 9.28095 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.004030 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.196983 B = 6945.979275 C = 7859.992747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.151 3.849 3 H 0.023 0.977 4 C 0.092 3.908 5 N -0.587 5.587 6 C 0.580 3.420 7 O -0.573 6.573 8 C -0.285 4.285 9 S 0.243 5.757 10 C -0.227 4.227 11 C -0.137 4.137 12 C -0.045 4.045 13 C 0.033 3.967 14 C 0.242 3.758 15 N -0.491 5.491 16 C 0.106 3.894 17 C 0.182 3.818 18 H 0.071 0.929 19 C -0.121 4.121 20 N -0.593 5.593 21 C -0.248 4.248 22 H 0.078 0.922 23 C -0.044 4.044 24 N -0.923 5.923 25 Si 0.953 3.047 26 H -0.266 1.266 27 H -0.300 1.300 28 H -0.299 1.299 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.205 0.795 35 H 0.181 0.819 36 H 0.172 0.828 37 H 0.108 0.892 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.031 0.969 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 6.917 -18.243 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.045 3.955 3 H 0.041 0.959 4 C -0.033 4.033 5 N -0.317 5.317 6 C 0.368 3.632 7 O -0.455 6.455 8 C -0.405 4.405 9 S 0.513 5.487 10 C -0.364 4.364 11 C -0.167 4.167 12 C -0.062 4.062 13 C -0.009 4.009 14 C -0.075 4.075 15 N -0.169 5.169 16 C -0.019 4.019 17 C 0.074 3.926 18 H 0.089 0.911 19 C -0.180 4.180 20 N -0.316 5.316 21 C -0.378 4.378 22 H 0.096 0.904 23 C -0.240 4.240 24 N -0.569 5.569 25 Si 0.783 3.217 26 H -0.191 1.191 27 H -0.227 1.227 28 H -0.227 1.227 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.222 0.778 35 H 0.198 0.802 36 H 0.190 0.810 37 H 0.126 0.874 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.266 4.900 -18.744 19.838 hybrid contribution 0.599 0.563 1.693 1.882 sum -3.667 5.463 -17.051 18.277 Atomic orbital electron populations 1.21705 0.93311 1.01930 1.01689 1.20949 0.94882 0.93329 0.86361 0.95932 1.22763 0.78667 1.01731 1.00099 1.47956 1.08010 1.55337 1.20440 1.17456 0.85236 0.78864 0.81671 1.90811 1.17350 1.59258 1.78036 1.24431 1.07369 1.03164 1.05545 1.83236 1.24378 1.21762 1.19358 1.25765 1.04145 0.99650 1.06876 1.20056 0.96594 1.03772 0.96250 1.19099 0.96907 0.93283 0.96910 1.18118 0.80419 1.02351 0.99997 1.29260 0.94106 0.91995 0.92121 1.81145 1.13998 1.10356 1.11424 1.22294 0.99022 0.95292 0.85242 1.20624 0.83435 0.94671 0.93829 0.91070 1.21755 0.97558 0.98965 0.99700 1.44348 1.01660 1.64988 1.20649 1.19485 0.96171 1.35425 0.86687 0.90414 1.25656 0.99147 1.00768 0.98403 1.70143 1.27146 1.44052 1.15598 0.85427 0.78557 0.78302 0.79412 1.19077 1.22700 1.22677 0.92649 0.93639 0.89941 0.87678 0.90746 0.77822 0.80197 0.81041 0.87382 0.92103 0.90807 0.93506 0.94989 0.94946 0.94594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 7.95 71.98 0.57 -3.29 16 2 C 0.15 5.32 3.22 45.03 0.15 5.46 16 3 H 0.02 0.86 7.41 -2.39 -0.02 0.84 16 4 C 0.09 2.69 5.46 86.41 0.47 3.16 16 5 N -0.59 -19.97 2.58 -821.97 -2.12 -22.09 16 6 C 0.58 19.39 6.92 86.42 0.60 19.99 16 7 O -0.57 -23.30 15.54 -4.34 -0.07 -23.36 16 8 C -0.28 -7.10 5.35 24.07 0.13 -6.97 16 9 S 0.24 4.15 20.21 -56.49 -1.14 3.01 16 10 C -0.23 -2.60 10.92 66.81 0.73 -1.87 16 11 C -0.14 -1.75 9.96 21.08 0.21 -1.54 16 12 C -0.04 -0.88 5.11 -20.42 -0.10 -0.98 16 13 C 0.03 0.61 5.44 28.04 0.15 0.76 16 14 C 0.24 6.62 14.80 89.44 1.32 7.94 16 15 N -0.49 -16.71 18.54 20.01 0.37 -16.34 16 16 C 0.11 4.14 5.99 86.57 0.52 4.66 16 17 C 0.18 8.14 2.35 45.18 0.11 8.24 16 18 H 0.07 3.72 6.05 -2.39 -0.01 3.70 16 19 C -0.12 -5.28 8.96 71.98 0.64 -4.64 16 20 N -0.59 -26.28 2.68 -649.87 -1.74 -28.03 16 21 C -0.25 -12.10 8.58 84.03 0.72 -11.38 16 22 H 0.08 3.65 6.22 -2.91 -0.02 3.64 16 23 C -0.04 -2.27 4.92 84.86 0.42 -1.85 16 24 N -0.92 -50.80 10.14 21.65 0.22 -50.58 16 25 Si 0.95 42.62 29.59 68.60 2.03 44.65 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 29 H 0.05 1.68 7.32 -2.39 -0.02 1.66 16 30 H 0.04 1.55 7.72 -2.39 -0.02 1.54 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.11 2.44 4.15 -13.57 -0.06 2.38 16 33 H 0.07 2.13 8.12 -2.39 -0.02 2.12 16 34 H 0.20 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.17 1.39 8.12 -2.39 -0.02 1.37 16 37 H 0.11 2.35 7.79 -2.39 -0.02 2.33 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.07 3.01 6.99 -2.39 -0.02 2.99 16 40 H 0.05 2.32 7.16 -2.38 -0.02 2.30 16 41 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.03 1.30 7.02 -2.39 -0.02 1.29 16 43 H 0.24 13.37 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -70.65 359.47 5.17 -65.47 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.99 Total: 9.60 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.64 Total: 17.68 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -3.28 Total: -117.04 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.07 Total: -23.36 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.14 Total: 3.01 kcal Total: -70.65 5.17 -65.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880452820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.202 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds