Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.78779 * 2 1 4 4 C 1.53701 * 109.79558 * 239.32038 * 2 1 3 5 5 N 1.46894 * 109.25871 * 294.41843 * 4 2 1 6 6 C 1.39517 * 110.99883 * 172.60378 * 5 4 2 7 7 C 1.39492 * 120.83986 * 64.03100 * 6 5 4 8 8 F 1.35100 * 120.44770 * 359.97156 * 7 6 5 9 9 C 1.38336 * 119.09418 * 179.74760 * 7 6 5 10 10 F 1.35097 * 119.58579 * 180.25135 * 9 7 6 11 11 N 1.32201 * 120.82038 * 0.53311 * 9 7 6 12 12 C 1.32208 * 121.85160 * 359.71485 * 11 9 7 13 13 F 1.35097 * 119.58978 * 180.02562 * 12 11 9 14 14 C 1.38333 * 120.81825 * 0.02562 * 12 11 9 15 15 F 1.35098 * 120.44628 * 179.97438 * 14 12 11 16 16 C 1.46891 * 111.27264 * 296.76097 * 5 4 2 17 17 C 1.53241 * 109.34415 * 63.10078 * 16 5 4 18 18 H 1.09001 * 109.62569 * 65.87962 * 17 16 5 19 19 C 1.52993 * 109.63063 * 186.46649 * 17 16 5 20 20 N 1.47079 * 109.62806 * 120.49117 * 2 1 3 21 21 C 1.36935 * 120.87961 * 248.51796 * 20 2 1 22 22 H 1.07994 * 120.00402 * 201.67546 * 21 20 2 23 23 C 1.38818 * 120.00008 * 21.67725 * 21 20 2 24 24 N 1.31617 * 120.00230 * 220.53391 * 23 21 20 25 25 Si 1.86798 * 119.99546 * 40.25747 * 23 21 20 26 26 H 1.48497 * 109.47284 * 270.27254 * 25 23 21 27 27 H 1.48503 * 109.47342 * 30.27541 * 25 23 21 28 28 H 1.48504 * 109.47242 * 150.27448 * 25 23 21 29 29 H 1.08994 * 109.46996 * 299.51426 * 1 2 3 30 30 H 1.09003 * 109.47131 * 59.51052 * 1 2 3 31 31 H 1.08999 * 109.47239 * 179.50886 * 1 2 3 32 32 H 1.09003 * 109.64853 * 174.41342 * 4 2 1 33 33 H 1.08998 * 109.41944 * 54.29207 * 4 2 1 34 34 H 1.09001 * 109.49352 * 303.14095 * 16 5 4 35 35 H 1.08998 * 109.49871 * 183.06595 * 16 5 4 36 36 H 1.09003 * 109.47289 * 179.03530 * 19 17 16 37 37 H 1.09001 * 109.46795 * 299.02307 * 19 17 16 38 38 H 1.09000 * 109.47895 * 59.02501 * 19 17 16 39 39 H 0.97001 * 119.99977 * 354.50422 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0505 -0.7379 -1.2438 5 7 1.6752 -2.1555 -1.1585 6 6 1.9825 -2.8261 -2.3428 7 6 3.3048 -2.9599 -2.7664 8 9 4.3141 -2.4397 -2.0344 9 6 3.5688 -3.6364 -3.9438 10 9 4.8461 -3.7762 -4.3607 11 7 2.5862 -4.1431 -4.6687 12 6 1.3206 -4.0325 -4.3030 13 9 0.3527 -4.5682 -5.0785 14 6 0.9750 -3.3750 -3.1360 15 9 -0.3208 -3.2659 -2.7696 16 6 2.3100 -2.8065 -0.0049 17 6 1.8056 -2.1544 1.2869 18 1 0.7416 -2.3575 1.4082 19 6 2.5795 -2.7149 2.4818 20 7 2.0241 -0.7029 1.1937 21 6 2.6655 -0.0231 2.1945 22 1 3.3179 -0.5512 2.8740 23 6 2.4771 1.3450 2.3356 24 7 3.4972 2.1229 2.6302 25 14 0.7773 2.0829 2.0998 26 1 0.5905 2.4496 0.6730 27 1 -0.2530 1.0889 2.4944 28 1 0.6431 3.2969 2.9445 29 1 -0.3633 0.5062 0.8943 30 1 -0.3633 0.5214 -0.8856 31 1 -0.3633 -1.0276 -0.0088 32 1 3.1360 -0.6514 -1.2938 33 1 1.6087 -0.2977 -2.1377 34 1 3.3919 -2.6912 -0.0720 35 1 2.0565 -3.8665 -0.0002 36 1 2.2305 -2.2370 3.3972 37 1 2.4157 -3.7905 2.5484 38 1 3.6433 -2.5168 2.3511 39 1 4.3633 1.7331 2.8270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = -71.186386 kcal Electronic energy + Delta-G solvation = -30548.942781 eV Core-core repulsion = 25801.396607 eV Total energy + Delta-G solvation = -4747.546174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.116 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.06848 -49.96291 -49.13746 -49.00110 -40.66546 -38.93989 -35.68756 -32.98401 -32.40220 -31.06140 -30.59135 -28.14674 -26.60078 -25.83387 -24.25092 -23.60316 -22.57531 -21.10368 -19.84096 -19.01335 -18.82869 -18.65498 -17.64465 -17.19268 -17.02713 -16.43197 -16.40393 -16.18078 -15.71778 -15.39001 -15.04776 -14.95290 -14.84884 -14.69819 -14.29564 -14.15193 -13.98727 -13.50649 -13.23259 -12.82899 -12.74851 -12.41838 -12.22084 -11.79073 -11.45192 -11.31175 -11.21870 -11.01417 -10.62255 -10.59277 -10.43176 -10.09471 -9.83295 -9.42522 -9.32562 -9.24155 -8.79301 -8.22129 -7.23852 -6.39605 -3.23678 -0.14370 0.00576 2.13657 2.42175 2.83295 3.08072 3.37173 3.38986 3.50994 3.66532 3.78875 4.05593 4.44505 4.52216 4.68309 4.72065 5.08916 5.14631 5.35365 5.39658 5.47820 5.70291 5.74601 5.75973 5.84586 5.96162 6.06802 6.12029 6.20468 6.28943 6.41195 6.46866 6.65897 6.67655 6.72109 6.93564 6.97493 7.03761 7.96276 8.35496 8.96720 9.59876 10.17682 10.97897 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.004416 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.311424 B = 6338.546017 C = 6929.871697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.171 3.829 3 H 0.090 0.910 4 C 0.044 3.956 5 N -0.487 5.487 6 C 0.134 3.866 7 C 0.021 3.979 8 F -0.095 7.095 9 C 0.318 3.682 10 F -0.086 7.086 11 N -0.500 5.500 12 C 0.315 3.685 13 F -0.085 7.085 14 C 0.073 3.927 15 F -0.089 7.089 16 C 0.041 3.959 17 C 0.174 3.826 18 H 0.039 0.961 19 C -0.135 4.135 20 N -0.589 5.589 21 C -0.367 4.367 22 H 0.077 0.923 23 C -0.004 4.004 24 N -0.892 5.892 25 Si 1.040 2.960 26 H -0.291 1.291 27 H -0.285 1.285 28 H -0.302 1.302 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.275 -11.895 -11.714 17.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.063 3.937 3 H 0.108 0.892 4 C -0.083 4.083 5 N -0.208 5.208 6 C 0.029 3.971 7 C -0.006 4.006 8 F -0.073 7.073 9 C 0.162 3.838 10 F -0.065 7.065 11 N -0.219 5.219 12 C 0.160 3.840 13 F -0.063 7.063 14 C 0.048 3.952 15 F -0.067 7.067 16 C -0.086 4.086 17 C 0.067 3.933 18 H 0.057 0.943 19 C -0.193 4.193 20 N -0.313 5.313 21 C -0.494 4.494 22 H 0.094 0.906 23 C -0.208 4.208 24 N -0.530 5.530 25 Si 0.873 3.127 26 H -0.219 1.219 27 H -0.212 1.212 28 H -0.230 1.230 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.361 -10.883 -12.346 17.026 hybrid contribution 1.374 -1.140 0.381 1.826 sum -2.988 -12.023 -11.966 17.224 Atomic orbital electron populations 1.22595 0.97919 1.02231 1.01013 1.20837 0.92568 0.95935 0.84391 0.89182 1.23089 0.99894 0.84039 1.01239 1.59678 1.59143 1.03724 0.98299 1.19297 0.87971 0.95526 0.94314 1.19191 0.86894 1.02187 0.92316 1.91639 1.56954 1.83761 1.74960 1.17315 0.80362 0.96579 0.89543 1.91734 1.31558 1.93346 1.89851 1.66308 0.98817 1.22779 1.34007 1.17201 0.83282 0.95812 0.87743 1.91735 1.57822 1.83211 1.73563 1.17902 0.80844 1.02545 0.93860 1.91637 1.30649 1.93664 1.90783 1.23035 0.97827 0.97435 0.90285 1.20457 0.96871 0.85614 0.90381 0.94298 1.21772 1.00723 0.98033 0.98795 1.44647 1.67281 1.01721 1.17608 1.20028 1.23459 0.92865 1.13037 0.90555 1.25922 1.03379 0.92684 0.98838 1.70957 1.00879 1.36464 1.44690 0.84320 0.77562 0.74805 0.76026 1.21876 1.21246 1.23021 0.92293 0.93535 0.91906 0.92682 0.90950 0.92693 0.91161 0.91369 0.93962 0.92568 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 8.14 37.16 0.30 -3.04 16 2 C 0.17 3.45 2.28 -67.25 -0.15 3.30 16 3 H 0.09 2.05 5.36 -51.93 -0.28 1.77 16 4 C 0.04 0.75 4.67 -3.46 -0.02 0.73 16 5 N -0.49 -7.52 3.96 -170.23 -0.67 -8.19 16 6 C 0.13 1.78 4.69 -83.43 -0.39 1.39 16 7 C 0.02 0.26 6.79 -39.08 -0.27 0.00 16 8 F -0.09 -1.37 13.72 2.25 0.03 -1.34 16 9 C 0.32 3.85 8.41 -17.36 -0.15 3.71 16 10 F -0.09 -1.04 17.20 2.25 0.04 -1.00 16 11 N -0.50 -6.12 10.38 -13.95 -0.14 -6.26 16 12 C 0.32 3.63 8.41 -17.35 -0.15 3.48 16 13 F -0.08 -0.94 17.20 2.25 0.04 -0.90 16 14 C 0.07 0.89 7.36 -39.08 -0.29 0.60 16 15 F -0.09 -1.14 17.05 2.25 0.04 -1.10 16 16 C 0.04 0.65 4.49 -3.70 -0.02 0.64 16 17 C 0.17 3.21 3.25 -67.49 -0.22 2.99 16 18 H 0.04 0.74 7.61 -51.93 -0.40 0.34 16 19 C -0.14 -2.33 7.92 37.15 0.29 -2.04 16 20 N -0.59 -12.92 2.53 -156.74 -0.40 -13.32 16 21 C -0.37 -9.40 8.92 -15.06 -0.13 -9.54 16 22 H 0.08 2.06 6.20 -52.49 -0.33 1.73 16 23 C 0.00 -0.10 4.77 -17.43 -0.08 -0.18 16 24 N -0.89 -26.01 13.70 55.49 0.76 -25.25 16 25 Si 1.04 24.89 23.65 -169.99 -4.02 20.87 16 26 H -0.29 -6.53 6.31 56.52 0.36 -6.17 16 27 H -0.28 -6.59 6.23 56.52 0.35 -6.24 16 28 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 29 H 0.06 1.20 3.66 -51.93 -0.19 1.01 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.13 7.06 -51.93 -0.37 0.76 16 32 H 0.05 0.99 6.67 -51.93 -0.35 0.64 16 33 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 34 H 0.05 0.92 6.41 -51.93 -0.33 0.59 16 35 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.07 1.28 7.45 -51.93 -0.39 0.89 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 1.03 7.64 -51.93 -0.40 0.63 16 39 H 0.27 7.73 8.73 -40.82 -0.36 7.37 16 LS Contribution 318.40 15.07 4.80 4.80 Total: -1.00 -26.96 318.40 -4.74 -31.70 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -3.95 Total: -2.03 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.26 Total: 2.03 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.46 Total: -53.03 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.15 Total: -4.35 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -4.02 Total: 20.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.96 -4.74 -31.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.484 kcal (2) G-P(sol) polarization free energy of solvation -26.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds