Wall clock time and date at job start Tue Mar 31 2020 18:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.78779 * 2 1 4 4 C 1.53701 * 109.79558 * 239.32038 * 2 1 3 5 5 N 1.46894 * 109.25871 * 294.41843 * 4 2 1 6 6 C 1.39517 * 110.99883 * 172.60378 * 5 4 2 7 7 C 1.39492 * 120.83986 * 64.03100 * 6 5 4 8 8 F 1.35100 * 120.44770 * 359.97156 * 7 6 5 9 9 C 1.38336 * 119.09418 * 179.74760 * 7 6 5 10 10 F 1.35097 * 119.58579 * 180.25135 * 9 7 6 11 11 N 1.32201 * 120.82038 * 0.53311 * 9 7 6 12 12 C 1.32208 * 121.85160 * 359.71485 * 11 9 7 13 13 F 1.35097 * 119.58978 * 180.02562 * 12 11 9 14 14 C 1.38333 * 120.81825 * 0.02562 * 12 11 9 15 15 F 1.35098 * 120.44628 * 179.97438 * 14 12 11 16 16 C 1.46891 * 111.27264 * 296.76097 * 5 4 2 17 17 C 1.53241 * 109.34415 * 63.10078 * 16 5 4 18 18 H 1.09001 * 109.62569 * 65.87962 * 17 16 5 19 19 C 1.52993 * 109.63063 * 186.46649 * 17 16 5 20 20 N 1.47079 * 109.62806 * 120.49117 * 2 1 3 21 21 C 1.36935 * 120.87961 * 248.51796 * 20 2 1 22 22 H 1.07994 * 120.00402 * 201.67546 * 21 20 2 23 23 C 1.38818 * 120.00008 * 21.67725 * 21 20 2 24 24 N 1.31617 * 120.00230 * 220.53391 * 23 21 20 25 25 Si 1.86798 * 119.99546 * 40.25747 * 23 21 20 26 26 H 1.48497 * 109.47284 * 270.27254 * 25 23 21 27 27 H 1.48503 * 109.47342 * 30.27541 * 25 23 21 28 28 H 1.48504 * 109.47242 * 150.27448 * 25 23 21 29 29 H 1.08994 * 109.46996 * 299.51426 * 1 2 3 30 30 H 1.09003 * 109.47131 * 59.51052 * 1 2 3 31 31 H 1.08999 * 109.47239 * 179.50886 * 1 2 3 32 32 H 1.09003 * 109.64853 * 174.41342 * 4 2 1 33 33 H 1.08998 * 109.41944 * 54.29207 * 4 2 1 34 34 H 1.09001 * 109.49352 * 303.14095 * 16 5 4 35 35 H 1.08998 * 109.49871 * 183.06595 * 16 5 4 36 36 H 1.09003 * 109.47289 * 179.03530 * 19 17 16 37 37 H 1.09001 * 109.46795 * 299.02307 * 19 17 16 38 38 H 1.09000 * 109.47895 * 59.02501 * 19 17 16 39 39 H 0.97001 * 119.99977 * 354.50422 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0505 -0.7379 -1.2438 5 7 1.6752 -2.1555 -1.1585 6 6 1.9825 -2.8261 -2.3428 7 6 3.3048 -2.9599 -2.7664 8 9 4.3141 -2.4397 -2.0344 9 6 3.5688 -3.6364 -3.9438 10 9 4.8461 -3.7762 -4.3607 11 7 2.5862 -4.1431 -4.6687 12 6 1.3206 -4.0325 -4.3030 13 9 0.3527 -4.5682 -5.0785 14 6 0.9750 -3.3750 -3.1360 15 9 -0.3208 -3.2659 -2.7696 16 6 2.3100 -2.8065 -0.0049 17 6 1.8056 -2.1544 1.2869 18 1 0.7416 -2.3575 1.4082 19 6 2.5795 -2.7149 2.4818 20 7 2.0241 -0.7029 1.1937 21 6 2.6655 -0.0231 2.1945 22 1 3.3179 -0.5512 2.8740 23 6 2.4771 1.3450 2.3356 24 7 3.4972 2.1229 2.6302 25 14 0.7773 2.0829 2.0998 26 1 0.5905 2.4496 0.6730 27 1 -0.2530 1.0889 2.4944 28 1 0.6431 3.2969 2.9445 29 1 -0.3633 0.5062 0.8943 30 1 -0.3633 0.5214 -0.8856 31 1 -0.3633 -1.0276 -0.0088 32 1 3.1360 -0.6514 -1.2938 33 1 1.6087 -0.2977 -2.1377 34 1 3.3919 -2.6912 -0.0720 35 1 2.0565 -3.8665 -0.0002 36 1 2.2305 -2.2370 3.3972 37 1 2.4157 -3.7905 2.5484 38 1 3.6433 -2.5168 2.3511 39 1 4.3633 1.7331 2.8270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518337.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:22 Heat of formation + Delta-G solvation = -88.218274 kcal Electronic energy + Delta-G solvation = -30549.681339 eV Core-core repulsion = 25801.396607 eV Total energy + Delta-G solvation = -4748.284732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.08194 -50.91004 -50.16190 -49.95849 -41.74865 -40.26601 -37.12937 -34.48546 -34.15905 -32.39243 -31.58017 -29.79560 -27.97561 -27.16055 -25.33889 -25.08079 -23.93046 -22.60776 -21.08333 -20.45560 -19.92621 -19.67394 -18.73804 -18.59298 -18.14313 -17.72902 -17.40426 -17.27591 -16.89415 -16.51791 -16.46148 -16.30150 -16.10248 -15.91312 -15.56505 -15.32496 -15.18204 -15.10352 -14.59798 -14.08037 -13.99292 -13.87970 -13.73677 -13.27928 -12.93963 -12.86274 -12.62443 -12.33457 -12.17364 -12.02032 -11.92098 -11.56564 -11.38627 -11.11725 -11.00789 -10.31460 -10.20278 -9.97377 -9.12692 -8.46683 -5.26968 -1.10967 -1.00719 1.15781 1.44613 1.46465 1.57684 1.74884 1.81087 2.05843 2.26317 2.56013 2.79720 2.95871 3.04819 3.33034 3.42140 3.68657 3.91732 3.96476 4.13666 4.15696 4.28410 4.36223 4.41511 4.58957 4.61220 4.64255 4.73272 4.82075 4.88437 5.03690 5.15556 5.24085 5.30395 5.44901 5.48956 5.57282 5.71435 5.96961 6.30873 6.96710 7.70426 8.21674 8.87795 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.004416 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.311424 B = 6338.546017 C = 6929.871697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.161 3.839 3 H 0.061 0.939 4 C 0.054 3.946 5 N -0.486 5.486 6 C 0.130 3.870 7 C 0.022 3.978 8 F -0.107 7.107 9 C 0.327 3.673 10 F -0.086 7.086 11 N -0.503 5.503 12 C 0.331 3.669 13 F -0.078 7.078 14 C 0.088 3.912 15 F -0.090 7.090 16 C 0.049 3.951 17 C 0.168 3.832 18 H 0.046 0.954 19 C -0.128 4.128 20 N -0.604 5.604 21 C -0.340 4.340 22 H 0.052 0.948 23 C -0.056 4.056 24 N -0.935 5.935 25 Si 1.078 2.922 26 H -0.268 1.268 27 H -0.272 1.272 28 H -0.318 1.318 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.097 0.903 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 -13.909 -13.886 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.054 3.946 3 H 0.079 0.921 4 C -0.073 4.073 5 N -0.207 5.207 6 C 0.025 3.975 7 C -0.004 4.004 8 F -0.085 7.085 9 C 0.172 3.828 10 F -0.064 7.064 11 N -0.222 5.222 12 C 0.175 3.825 13 F -0.057 7.057 14 C 0.063 3.937 15 F -0.068 7.068 16 C -0.078 4.078 17 C 0.062 3.938 18 H 0.063 0.937 19 C -0.186 4.186 20 N -0.328 5.328 21 C -0.470 4.470 22 H 0.070 0.930 23 C -0.255 4.255 24 N -0.577 5.577 25 Si 0.908 3.092 26 H -0.195 1.195 27 H -0.198 1.198 28 H -0.248 1.248 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.061 0.939 35 H 0.119 0.881 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.217 -12.948 -14.561 20.453 hybrid contribution 1.967 -0.684 0.998 2.309 sum -4.250 -13.632 -13.563 19.694 Atomic orbital electron populations 1.22490 0.96193 1.02965 1.01311 1.20902 0.93742 0.94894 0.85047 0.92113 1.22829 0.98974 0.85143 1.00367 1.59538 1.58998 1.03009 0.99112 1.19105 0.88332 0.96285 0.93809 1.19104 0.86464 1.02417 0.92459 1.91619 1.57499 1.84047 1.75331 1.17159 0.80361 0.96144 0.89127 1.91741 1.31624 1.93280 1.89783 1.66352 0.99069 1.22802 1.34016 1.17062 0.83060 0.95045 0.87346 1.91762 1.57576 1.82992 1.73350 1.17704 0.80405 1.02073 0.93552 1.91645 1.30709 1.93625 1.90785 1.22874 0.96995 0.98711 0.89187 1.20665 0.97393 0.83471 0.92281 0.93682 1.21693 0.99235 1.00289 0.97401 1.44744 1.67510 1.03264 1.17298 1.19945 1.21755 0.92769 1.12496 0.92979 1.26774 1.05093 0.93820 0.99778 1.71074 1.00867 1.36871 1.48861 0.83822 0.74555 0.73866 0.76960 1.19483 1.19847 1.24760 0.94055 0.91030 0.90941 0.94210 0.88496 0.93905 0.88147 0.93589 0.90078 0.94362 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.92 8.14 71.98 0.59 -5.33 16 2 C 0.16 6.31 2.28 45.12 0.10 6.41 16 3 H 0.06 2.74 5.36 -2.39 -0.01 2.73 16 4 C 0.05 1.72 4.67 86.54 0.40 2.12 16 5 N -0.49 -13.57 3.96 -692.49 -2.74 -16.31 16 6 C 0.13 3.03 4.69 38.52 0.18 3.21 16 7 C 0.02 0.51 6.79 22.60 0.15 0.66 16 8 F -0.11 -2.94 13.72 44.97 0.62 -2.32 16 9 C 0.33 7.09 8.41 84.66 0.71 7.80 16 10 F -0.09 -1.89 17.20 44.97 0.77 -1.12 16 11 N -0.50 -10.75 10.38 -198.06 -2.06 -12.80 16 12 C 0.33 6.45 8.41 84.66 0.71 7.16 16 13 F -0.08 -1.46 17.20 44.97 0.77 -0.69 16 14 C 0.09 1.79 7.36 22.59 0.17 1.96 16 15 F -0.09 -1.94 17.05 44.97 0.77 -1.17 16 16 C 0.05 1.44 4.49 86.39 0.39 1.82 16 17 C 0.17 5.91 3.25 44.96 0.15 6.05 16 18 H 0.05 1.58 7.61 -2.39 -0.02 1.56 16 19 C -0.13 -4.31 7.92 71.98 0.57 -3.74 16 20 N -0.60 -26.21 2.53 -649.80 -1.65 -27.86 16 21 C -0.34 -17.90 8.92 84.04 0.75 -17.15 16 22 H 0.05 2.94 6.20 -2.91 -0.02 2.92 16 23 C -0.06 -3.15 4.77 84.86 0.40 -2.74 16 24 N -0.94 -56.94 13.70 21.65 0.30 -56.64 16 25 Si 1.08 51.05 23.65 68.60 1.62 52.68 16 26 H -0.27 -11.57 6.31 99.48 0.63 -10.94 16 27 H -0.27 -12.11 6.23 99.48 0.62 -11.49 16 28 H -0.32 -15.79 7.11 99.48 0.71 -15.09 16 29 H 0.04 1.58 3.66 -2.39 -0.01 1.57 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.35 7.06 -2.39 -0.02 2.34 16 32 H 0.04 1.39 6.67 -2.39 -0.02 1.38 16 33 H 0.10 2.61 8.09 -2.39 -0.02 2.59 16 34 H 0.04 1.37 6.41 -2.39 -0.02 1.36 16 35 H 0.10 2.36 8.09 -2.39 -0.02 2.34 16 36 H 0.04 1.73 7.45 -2.39 -0.02 1.71 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.40 7.64 -2.39 -0.02 1.38 16 39 H 0.25 15.44 8.73 -92.71 -0.81 14.63 16 Total: -1.00 -59.51 318.40 4.60 -54.90 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 0.93 Total: 3.10 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.28 Total: 8.24 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.15 Total: -113.62 kcal Atomic # 9 Polarization: -8.23 SS G_CDS: 2.93 Total: -5.30 kcal Atomic # 14 Polarization: 51.05 SS G_CDS: 1.62 Total: 52.68 kcal Total: -59.51 4.60 -54.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518337.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.314 kcal (2) G-P(sol) polarization free energy of solvation -59.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds