Wall clock time and date at job start Tue Mar 31 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52789 * 109.55399 * 239.76620 * 2 1 3 5 5 N 1.46898 * 109.41936 * 186.61127 * 4 2 1 6 6 C 1.39522 * 110.99955 * 187.11850 * 5 4 2 7 7 C 1.39482 * 120.84259 * 175.41927 * 6 5 4 8 8 F 1.35102 * 120.45427 * 359.97438 * 7 6 5 9 9 C 1.38333 * 119.09583 * 179.72729 * 7 6 5 10 10 F 1.35105 * 119.58917 * 180.27390 * 9 7 6 11 11 N 1.32206 * 120.81908 * 0.55550 * 9 7 6 12 12 C 1.32209 * 121.84980 * 359.71637 * 11 9 7 13 13 F 1.35092 * 119.58719 * 180.02562 * 12 11 9 14 14 C 1.38330 * 120.81847 * 0.02562 * 12 11 9 15 15 F 1.35105 * 120.44740 * 179.97438 * 14 12 11 16 16 C 1.46894 * 111.26932 * 62.96477 * 5 4 2 17 17 C 1.53234 * 109.34330 * 296.89461 * 16 5 4 18 18 H 1.09005 * 109.62927 * 294.11808 * 17 16 5 19 19 C 1.53007 * 109.78996 * 173.63492 * 17 16 5 20 20 N 1.47077 * 108.52349 * 53.83069 * 17 16 5 21 21 C 1.36933 * 120.88616 * 128.81552 * 20 17 16 22 22 H 1.08001 * 119.99502 * 308.48582 * 21 20 17 23 23 C 1.38808 * 120.00343 * 128.48527 * 21 20 17 24 24 N 1.31620 * 119.99747 * 338.25040 * 23 21 20 25 25 Si 1.86795 * 120.00346 * 158.24906 * 23 21 20 26 26 H 1.48499 * 109.47312 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46977 * 299.99798 * 25 23 21 28 28 H 1.48496 * 109.47349 * 59.99661 * 25 23 21 29 29 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 30 30 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 31 31 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 32 32 H 1.08997 * 109.56307 * 66.55671 * 4 2 1 33 33 H 1.08997 * 109.33602 * 306.52636 * 4 2 1 34 34 H 1.09002 * 109.49105 * 176.93358 * 16 5 4 35 35 H 1.08998 * 109.49509 * 56.85719 * 16 5 4 36 36 H 1.09000 * 109.46961 * 300.87598 * 19 17 16 37 37 H 1.09001 * 109.46891 * 60.87122 * 19 17 16 38 38 H 1.08997 * 109.46973 * 180.87442 * 19 17 16 39 39 H 0.96996 * 120.00129 * 175.07010 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7250 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0219 -1.3754 -2.3520 7 6 5.3991 -1.5007 -2.5345 8 9 6.2560 -1.1257 -1.5596 9 6 5.8754 -2.0190 -3.7253 10 9 7.2073 -2.1500 -3.9106 11 7 5.0437 -2.3826 -4.6866 12 6 3.7329 -2.2739 -4.5531 13 9 2.9251 -2.6600 -5.5647 14 6 3.1783 -1.7699 -3.3904 15 9 1.8377 -1.6616 -3.2622 16 6 3.8963 -1.6901 -0.0156 17 6 3.4619 -0.9994 1.2814 18 1 4.0202 -0.0717 1.4070 19 6 3.7246 -1.9226 2.4730 20 7 2.0240 -0.7028 1.1939 21 6 1.1671 -1.0760 2.1946 22 1 1.1626 -2.0962 2.5490 23 6 0.3044 -0.1433 2.7536 24 7 0.5736 1.1416 2.6590 25 14 -1.2386 -0.7115 3.6399 26 1 -1.9848 0.4703 4.1417 27 1 -2.0969 -1.4754 2.6992 28 1 -0.8611 -1.5810 4.7829 29 1 -0.3633 0.6279 0.8135 30 1 -0.3634 0.3905 -0.9506 31 1 -0.3634 -1.0185 0.1371 32 1 1.7785 -0.1529 -2.1337 33 1 1.5853 -1.7134 -1.2986 34 1 4.9788 -1.8181 -0.0146 35 1 3.4145 -2.6652 -0.0874 36 1 3.1707 -2.8521 2.3416 37 1 4.7908 -2.1407 2.5355 38 1 3.3996 -1.4325 3.3908 39 1 -0.0634 1.7960 2.9859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:26 Heat of formation + Delta-G solvation = -68.575168 kcal Electronic energy + Delta-G solvation = -30404.888440 eV Core-core repulsion = 25657.455497 eV Total energy + Delta-G solvation = -4747.432943 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.116 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.00924 -49.86927 -49.09911 -48.93011 -40.49653 -38.75283 -35.66790 -33.11629 -32.16253 -30.73319 -30.43869 -27.80117 -26.54903 -25.79641 -24.08202 -23.92122 -22.40706 -20.78079 -19.63922 -19.03573 -18.85485 -18.50777 -17.56220 -17.05075 -16.62089 -16.31226 -16.14988 -15.73065 -15.64840 -15.36964 -15.21951 -14.95386 -14.66626 -14.48660 -14.36852 -14.03465 -13.64033 -13.49403 -12.98663 -12.89465 -12.66766 -11.90651 -11.77138 -11.58258 -11.32278 -11.02409 -11.00688 -10.85323 -10.69146 -10.60443 -10.47737 -10.32983 -10.02090 -9.91177 -9.66670 -9.14029 -8.40150 -8.20951 -6.57154 -5.86843 -3.65781 0.01039 0.27108 2.29893 2.58091 3.02309 3.19747 3.26862 3.34125 3.36517 3.46460 3.90534 4.22237 4.34307 4.55512 4.67857 4.99810 5.13829 5.30060 5.36697 5.48141 5.61312 5.77284 5.85982 5.96838 6.04582 6.16165 6.24040 6.39824 6.41770 6.61512 6.63260 6.75573 6.77752 6.84396 6.99653 7.12150 7.35375 7.53808 7.74698 8.45952 9.03733 9.59170 10.35305 11.05236 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.004084 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.917001 B = 6855.213294 C = 7856.212345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.194 3.806 3 H 0.039 0.961 4 C 0.021 3.979 5 N -0.460 5.460 6 C 0.162 3.838 7 C 0.016 3.984 8 F -0.098 7.098 9 C 0.336 3.664 10 F -0.086 7.086 11 N -0.524 5.524 12 C 0.338 3.662 13 F -0.087 7.087 14 C -0.009 4.009 15 F -0.099 7.099 16 C 0.039 3.961 17 C 0.171 3.829 18 H 0.039 0.961 19 C -0.130 4.130 20 N -0.577 5.577 21 C -0.269 4.269 22 H 0.055 0.945 23 C 0.040 3.960 24 N -0.869 5.869 25 Si 0.882 3.118 26 H -0.289 1.289 27 H -0.278 1.278 28 H -0.278 1.278 29 H 0.089 0.911 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.071 0.929 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.977 -5.344 -10.653 13.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.088 3.912 3 H 0.057 0.943 4 C -0.106 4.106 5 N -0.171 5.171 6 C 0.050 3.950 7 C -0.011 4.011 8 F -0.076 7.076 9 C 0.182 3.818 10 F -0.065 7.065 11 N -0.246 5.246 12 C 0.183 3.817 13 F -0.066 7.066 14 C -0.037 4.037 15 F -0.077 7.077 16 C -0.086 4.086 17 C 0.065 3.935 18 H 0.057 0.943 19 C -0.188 4.188 20 N -0.302 5.302 21 C -0.399 4.399 22 H 0.072 0.928 23 C -0.163 4.163 24 N -0.508 5.508 25 Si 0.709 3.291 26 H -0.215 1.215 27 H -0.204 1.204 28 H -0.204 1.204 29 H 0.107 0.893 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.395 -4.995 -11.051 14.204 hybrid contribution -1.368 -0.401 0.721 1.597 sum 6.027 -5.396 -10.330 13.121 Atomic orbital electron populations 1.21952 0.94837 1.02636 1.00449 1.20345 0.93624 0.93996 0.83257 0.94285 1.23851 0.81777 1.02297 1.02693 1.58844 1.15047 1.43546 0.99628 1.19408 0.90889 0.90669 0.94044 1.17456 0.86324 1.09213 0.88132 1.91581 1.67713 1.88978 1.59360 1.17076 0.79537 0.96951 0.88272 1.91720 1.26695 1.92942 1.95166 1.66313 1.02579 1.23679 1.32013 1.17166 0.84382 0.96258 0.83889 1.91716 1.69211 1.87966 1.57688 1.18054 0.79674 1.09926 0.96012 1.91626 1.26686 1.93813 1.95598 1.23207 1.00752 0.94448 0.90174 1.20579 0.87885 0.95497 0.89580 0.94333 1.21688 0.98402 0.99479 0.99194 1.44091 1.00512 1.68015 1.17553 1.18613 1.15814 0.92465 1.12968 0.92767 1.25459 1.00233 0.95157 0.95499 1.70193 1.33714 1.00077 1.46846 0.86755 0.84121 0.78107 0.80101 1.21462 1.20410 1.20369 0.89276 0.95521 0.92948 0.89702 0.91955 0.90050 0.92965 0.93030 0.94232 0.90976 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 7.93 37.16 0.29 -2.66 16 2 C 0.19 4.11 3.16 -67.72 -0.21 3.90 16 3 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 4 C 0.02 0.36 3.26 -3.93 -0.01 0.35 16 5 N -0.46 -7.60 4.61 -170.79 -0.79 -8.39 16 6 C 0.16 2.31 5.58 -83.43 -0.47 1.84 16 7 C 0.02 0.21 6.99 -39.08 -0.27 -0.06 16 8 F -0.10 -1.34 15.18 2.25 0.03 -1.30 16 9 C 0.34 4.21 8.41 -17.36 -0.15 4.06 16 10 F -0.09 -1.04 17.20 2.25 0.04 -1.00 16 11 N -0.52 -6.87 10.38 -13.95 -0.14 -7.01 16 12 C 0.34 4.31 8.41 -17.36 -0.15 4.17 16 13 F -0.09 -1.08 17.20 2.25 0.04 -1.04 16 14 C -0.01 -0.12 6.99 -39.08 -0.27 -0.39 16 15 F -0.10 -1.40 12.38 2.25 0.03 -1.37 16 16 C 0.04 0.65 4.69 -3.71 -0.02 0.63 16 17 C 0.17 3.35 3.65 -67.49 -0.25 3.11 16 18 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.13 -2.31 8.18 37.16 0.30 -2.00 16 20 N -0.58 -12.99 2.83 -157.27 -0.45 -13.44 16 21 C -0.27 -6.59 6.79 -15.06 -0.10 -6.69 16 22 H 0.05 1.35 7.14 -52.49 -0.37 0.97 16 23 C 0.04 0.99 3.22 -17.43 -0.06 0.94 16 24 N -0.87 -23.18 11.87 55.49 0.66 -22.52 16 25 Si 0.88 19.81 29.61 -169.99 -5.03 14.78 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.09 2.11 4.98 -51.93 -0.26 1.85 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.12 7.68 -51.93 -0.40 0.72 16 32 H 0.08 1.39 6.44 -51.93 -0.33 1.05 16 33 H 0.06 1.11 6.95 -51.93 -0.36 0.75 16 34 H 0.08 1.20 5.99 -51.93 -0.31 0.89 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.91 7.60 -51.93 -0.39 0.51 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.43 7.65 -51.93 -0.40 1.04 16 39 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -25.25 323.27 -6.17 -31.43 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.08 Total: -2.19 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -1.35 Total: 7.18 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.72 Total: -51.36 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.14 Total: -4.71 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -25.25 -6.17 -31.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.150 kcal (2) G-P(sol) polarization free energy of solvation -25.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds