Wall clock time and date at job start Tue Mar 31 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.78379 * 2 1 4 4 C 1.52789 * 109.55399 * 239.76620 * 2 1 3 5 5 N 1.46898 * 109.41936 * 186.61127 * 4 2 1 6 6 C 1.39522 * 110.99955 * 187.11850 * 5 4 2 7 7 C 1.39482 * 120.84259 * 175.41927 * 6 5 4 8 8 F 1.35102 * 120.45427 * 359.97438 * 7 6 5 9 9 C 1.38333 * 119.09583 * 179.72729 * 7 6 5 10 10 F 1.35105 * 119.58917 * 180.27390 * 9 7 6 11 11 N 1.32206 * 120.81908 * 0.55550 * 9 7 6 12 12 C 1.32209 * 121.84980 * 359.71637 * 11 9 7 13 13 F 1.35092 * 119.58719 * 180.02562 * 12 11 9 14 14 C 1.38330 * 120.81847 * 0.02562 * 12 11 9 15 15 F 1.35105 * 120.44740 * 179.97438 * 14 12 11 16 16 C 1.46894 * 111.26932 * 62.96477 * 5 4 2 17 17 C 1.53234 * 109.34330 * 296.89461 * 16 5 4 18 18 H 1.09005 * 109.62927 * 294.11808 * 17 16 5 19 19 C 1.53007 * 109.78996 * 173.63492 * 17 16 5 20 20 N 1.47077 * 108.52349 * 53.83069 * 17 16 5 21 21 C 1.36933 * 120.88616 * 128.81552 * 20 17 16 22 22 H 1.08001 * 119.99502 * 308.48582 * 21 20 17 23 23 C 1.38808 * 120.00343 * 128.48527 * 21 20 17 24 24 N 1.31620 * 119.99747 * 338.25040 * 23 21 20 25 25 Si 1.86795 * 120.00346 * 158.24906 * 23 21 20 26 26 H 1.48499 * 109.47312 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46977 * 299.99798 * 25 23 21 28 28 H 1.48496 * 109.47349 * 59.99661 * 25 23 21 29 29 H 1.08997 * 109.47157 * 307.66292 * 1 2 3 30 30 H 1.09000 * 109.47503 * 67.66646 * 1 2 3 31 31 H 1.09003 * 109.47319 * 187.66482 * 1 2 3 32 32 H 1.08997 * 109.56307 * 66.55671 * 4 2 1 33 33 H 1.08997 * 109.33602 * 306.52636 * 4 2 1 34 34 H 1.09002 * 109.49105 * 176.93358 * 16 5 4 35 35 H 1.08998 * 109.49509 * 56.85719 * 16 5 4 36 36 H 1.09000 * 109.46961 * 300.87598 * 19 17 16 37 37 H 1.09001 * 109.46891 * 60.87122 * 19 17 16 38 38 H 1.08997 * 109.46973 * 180.87442 * 19 17 16 39 39 H 0.96996 * 120.00129 * 175.07010 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0414 -0.7250 -1.2439 5 7 3.5017 -0.8626 -1.1633 6 6 4.0219 -1.3754 -2.3520 7 6 5.3991 -1.5007 -2.5345 8 9 6.2560 -1.1257 -1.5596 9 6 5.8754 -2.0190 -3.7253 10 9 7.2073 -2.1500 -3.9106 11 7 5.0437 -2.3826 -4.6866 12 6 3.7329 -2.2739 -4.5531 13 9 2.9251 -2.6600 -5.5647 14 6 3.1783 -1.7699 -3.3904 15 9 1.8377 -1.6616 -3.2622 16 6 3.8963 -1.6901 -0.0156 17 6 3.4619 -0.9994 1.2814 18 1 4.0202 -0.0717 1.4070 19 6 3.7246 -1.9226 2.4730 20 7 2.0240 -0.7028 1.1939 21 6 1.1671 -1.0760 2.1946 22 1 1.1626 -2.0962 2.5490 23 6 0.3044 -0.1433 2.7536 24 7 0.5736 1.1416 2.6590 25 14 -1.2386 -0.7115 3.6399 26 1 -1.9848 0.4703 4.1417 27 1 -2.0969 -1.4754 2.6992 28 1 -0.8611 -1.5810 4.7829 29 1 -0.3633 0.6279 0.8135 30 1 -0.3634 0.3905 -0.9506 31 1 -0.3634 -1.0185 0.1371 32 1 1.7785 -0.1529 -2.1337 33 1 1.5853 -1.7134 -1.2986 34 1 4.9788 -1.8181 -0.0146 35 1 3.4145 -2.6652 -0.0874 36 1 3.1707 -2.8521 2.3416 37 1 4.7908 -2.1407 2.5355 38 1 3.3996 -1.4325 3.3908 39 1 -0.0634 1.7960 2.9859 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:25 Heat of formation + Delta-G solvation = -82.794315 kcal Electronic energy + Delta-G solvation = -30405.505029 eV Core-core repulsion = 25657.455497 eV Total energy + Delta-G solvation = -4748.049532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.116 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.06996 -50.89800 -50.15037 -49.97198 -41.64726 -40.11679 -37.17749 -34.69666 -33.74659 -32.17194 -31.49588 -29.46957 -27.94563 -27.33442 -25.56670 -25.03614 -23.73538 -22.30564 -21.21926 -20.23968 -19.92666 -19.58967 -18.65400 -18.19783 -18.07314 -17.51813 -17.29882 -16.98242 -16.83714 -16.79901 -16.37899 -16.27944 -16.20913 -15.79938 -15.69138 -15.10973 -15.05775 -14.93388 -14.59442 -14.14679 -13.73344 -13.41540 -13.31410 -13.25596 -12.86715 -12.63736 -12.46433 -12.42903 -12.30789 -12.10843 -11.96504 -11.85217 -11.59723 -11.53472 -11.22717 -10.16988 -10.13511 -9.61730 -8.44485 -7.73635 -5.58625 -1.02459 -0.82003 1.24509 1.46462 1.50856 1.52884 1.54939 1.93110 2.08273 2.30651 2.50201 2.84095 3.14106 3.22969 3.41470 3.49205 3.58082 3.96110 4.03728 4.19417 4.26407 4.35128 4.45923 4.57124 4.65686 4.73592 4.80793 4.90451 4.92916 4.94778 5.17755 5.31917 5.40902 5.54620 5.57533 5.62289 5.67289 5.73879 5.86386 6.55273 7.20732 7.76904 8.50146 9.13097 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.004084 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.917001 B = 6855.213294 C = 7856.212345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.192 3.808 3 H 0.006 0.994 4 C 0.039 3.961 5 N -0.475 5.475 6 C 0.157 3.843 7 C 0.025 3.975 8 F -0.100 7.100 9 C 0.349 3.651 10 F -0.080 7.080 11 N -0.526 5.526 12 C 0.349 3.651 13 F -0.082 7.082 14 C -0.004 4.004 15 F -0.102 7.102 16 C 0.052 3.948 17 C 0.164 3.836 18 H 0.015 0.985 19 C -0.120 4.120 20 N -0.593 5.593 21 C -0.265 4.265 22 H 0.051 0.949 23 C 0.003 3.997 24 N -0.904 5.904 25 Si 0.932 3.068 26 H -0.296 1.296 27 H -0.273 1.273 28 H -0.276 1.276 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -6.862 -12.145 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.086 3.914 3 H 0.024 0.976 4 C -0.088 4.088 5 N -0.186 5.186 6 C 0.046 3.954 7 C -0.002 4.002 8 F -0.078 7.078 9 C 0.195 3.805 10 F -0.059 7.059 11 N -0.248 5.248 12 C 0.194 3.806 13 F -0.061 7.061 14 C -0.031 4.031 15 F -0.081 7.081 16 C -0.074 4.074 17 C 0.058 3.942 18 H 0.032 0.968 19 C -0.178 4.178 20 N -0.318 5.318 21 C -0.395 4.395 22 H 0.069 0.931 23 C -0.197 4.197 24 N -0.545 5.545 25 Si 0.759 3.241 26 H -0.222 1.222 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.211 -6.540 -12.565 16.373 hybrid contribution -1.515 0.051 1.111 1.880 sum 6.695 -6.489 -11.454 14.769 Atomic orbital electron populations 1.21824 0.94894 1.01653 1.00789 1.20258 0.93736 0.92741 0.84696 0.97642 1.23545 0.82649 1.01783 1.00847 1.58762 1.14378 1.44880 1.00595 1.19275 0.91340 0.91595 0.93222 1.17366 0.85788 1.08882 0.88204 1.91581 1.67714 1.89001 1.59502 1.16935 0.79645 0.96208 0.87754 1.91745 1.26287 1.92777 1.95071 1.66361 1.02710 1.23618 1.32122 1.17021 0.84228 0.95664 0.83653 1.91735 1.69120 1.87808 1.57452 1.17981 0.79368 1.09834 0.95951 1.91610 1.27007 1.93837 1.95599 1.22988 1.01840 0.93923 0.88605 1.20691 0.86039 0.95254 0.92244 0.96769 1.21581 1.00592 0.98589 0.97021 1.44340 1.01670 1.67985 1.17757 1.18751 1.15773 0.92149 1.12785 0.93119 1.25947 1.02323 0.95068 0.96367 1.70292 1.34404 1.00963 1.48836 0.85954 0.81587 0.77312 0.79259 1.22240 1.19883 1.20101 0.92030 0.92924 0.93515 0.88351 0.91893 0.88014 0.92546 0.92871 0.90835 0.93780 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.62 7.93 71.98 0.57 -5.05 16 2 C 0.19 8.19 3.16 44.81 0.14 8.33 16 3 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 4 C 0.04 1.31 3.26 86.23 0.28 1.59 16 5 N -0.47 -14.96 4.61 -694.26 -3.20 -18.16 16 6 C 0.16 4.09 5.58 38.52 0.21 4.31 16 7 C 0.02 0.58 6.99 22.59 0.16 0.74 16 8 F -0.10 -2.46 15.18 44.97 0.68 -1.78 16 9 C 0.35 7.73 8.41 84.66 0.71 8.44 16 10 F -0.08 -1.69 17.20 44.97 0.77 -0.92 16 11 N -0.53 -12.25 10.38 -198.05 -2.06 -14.30 16 12 C 0.35 7.94 8.41 84.66 0.71 8.65 16 13 F -0.08 -1.83 17.20 44.97 0.77 -1.05 16 14 C 0.00 -0.09 6.99 22.59 0.16 0.06 16 15 F -0.10 -2.64 12.38 44.97 0.56 -2.08 16 16 C 0.05 1.61 4.69 86.38 0.40 2.02 16 17 C 0.16 6.38 3.65 44.96 0.16 6.54 16 18 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 19 C -0.12 -4.17 8.18 71.98 0.59 -3.58 16 20 N -0.59 -26.92 2.83 -651.47 -1.84 -28.77 16 21 C -0.26 -13.08 6.79 84.03 0.57 -12.51 16 22 H 0.05 2.53 7.14 -2.91 -0.02 2.51 16 23 C 0.00 0.14 3.22 84.86 0.27 0.42 16 24 N -0.90 -49.70 11.87 21.65 0.26 -49.45 16 25 Si 0.93 41.21 29.61 68.60 2.03 43.24 16 26 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 29 H 0.06 2.97 4.98 -2.39 -0.01 2.95 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.97 7.68 -2.39 -0.02 1.95 16 32 H 0.10 3.05 6.44 -2.39 -0.02 3.04 16 33 H 0.06 2.13 6.95 -2.39 -0.02 2.11 16 34 H 0.10 2.75 5.99 -2.39 -0.01 2.74 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.81 7.60 -2.39 -0.02 1.79 16 37 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.04 1.76 7.65 -2.39 -0.02 1.74 16 39 H 0.25 13.50 8.32 -92.71 -0.77 12.73 16 Total: -1.00 -54.31 323.27 4.04 -50.27 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 1.12 Total: 3.06 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 4.95 Total: 19.95 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -6.84 Total: -110.68 kcal Atomic # 9 Polarization: -8.62 SS G_CDS: 2.79 Total: -5.84 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -54.31 4.04 -50.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.529 kcal (2) G-P(sol) polarization free energy of solvation -54.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds