Wall clock time and date at job start Tue Mar 31 2020 18:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.62868 * 2 1 4 4 C 1.53243 * 109.62820 * 120.38573 * 2 1 3 5 5 N 1.46902 * 109.36387 * 173.52540 * 4 2 1 6 6 C 1.39517 * 110.99933 * 172.75851 * 5 4 2 7 7 C 1.39486 * 120.84601 * 299.72412 * 6 5 4 8 8 F 1.35098 * 120.44852 * 359.97363 * 7 6 5 9 9 C 1.38331 * 119.09922 * 179.72978 * 7 6 5 10 10 F 1.35103 * 119.59372 * 180.29095 * 9 7 6 11 11 N 1.32205 * 120.81644 * 0.55457 * 9 7 6 12 12 C 1.32207 * 121.85174 * 359.71536 * 11 9 7 13 13 F 1.35108 * 119.59004 * 180.02562 * 12 11 9 14 14 C 1.38333 * 120.82139 * 0.02562 * 12 11 9 15 15 F 1.35096 * 120.45062 * 180.02562 * 14 12 11 16 16 C 1.46895 * 111.26763 * 296.93908 * 5 4 2 17 17 C 1.53231 * 109.36407 * 63.06281 * 16 5 4 18 18 H 1.09005 * 109.62736 * 186.47144 * 17 16 5 19 19 C 1.52998 * 109.63197 * 65.89225 * 17 16 5 20 20 N 1.47074 * 108.52447 * 306.17998 * 17 16 5 21 21 C 1.36939 * 120.88385 * 231.16516 * 20 17 16 22 22 H 1.08004 * 120.00230 * 153.39907 * 21 20 17 23 23 C 1.38803 * 120.00208 * 333.39852 * 21 20 17 24 24 N 1.31624 * 119.99644 * 343.00545 * 23 21 20 25 25 Si 1.86802 * 120.00399 * 163.00351 * 23 21 20 26 26 H 1.48496 * 109.47320 * 89.99981 * 25 23 21 27 27 H 1.48498 * 109.47074 * 210.00237 * 25 23 21 28 28 H 1.48499 * 109.46765 * 329.99828 * 25 23 21 29 29 H 1.09004 * 109.47104 * 299.61336 * 1 2 3 30 30 H 1.08997 * 109.46956 * 59.61377 * 1 2 3 31 31 H 1.08998 * 109.47602 * 179.61491 * 1 2 3 32 32 H 1.09002 * 109.49525 * 293.50003 * 4 2 1 33 33 H 1.08999 * 109.49386 * 53.54918 * 4 2 1 34 34 H 1.08996 * 109.47022 * 303.10052 * 16 5 4 35 35 H 1.09004 * 109.51211 * 183.05336 * 16 5 4 36 36 H 1.09001 * 109.46775 * 300.97270 * 19 17 16 37 37 H 1.08998 * 109.47219 * 60.96491 * 19 17 16 38 38 H 1.08999 * 109.47766 * 180.96933 * 19 17 16 39 39 H 0.97001 * 119.99570 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7301 1.2451 5 7 3.5054 -0.8630 1.1628 6 6 4.0285 -1.3758 2.3502 7 6 3.8584 -0.6988 3.5578 8 9 3.1820 0.4700 3.5981 9 6 4.3874 -1.2429 4.7144 10 9 4.2235 -0.5986 5.8905 11 7 5.0559 -2.3830 4.6823 12 6 5.2426 -3.0509 3.5567 13 9 5.9326 -4.2123 3.5767 14 6 4.7402 -2.5754 2.3587 15 9 4.9350 -3.2642 1.2130 16 6 3.9015 -1.6871 0.0131 17 6 3.4629 -0.9963 -1.2824 18 1 3.6508 -1.6550 -2.1303 19 6 4.2416 0.3090 -1.4580 20 7 2.0241 -0.7049 -1.1926 21 6 1.1673 -1.0795 -2.1929 22 1 0.1266 -1.2648 -1.9714 23 6 1.6362 -1.2213 -3.4916 24 7 2.7891 -0.6881 -3.8368 25 14 0.6313 -2.1686 -4.7494 26 1 -0.2910 -1.2382 -5.4486 27 1 1.5427 -2.7984 -5.7384 28 1 -0.1566 -3.2225 -4.0612 29 1 -0.3633 0.5078 0.8935 30 1 -0.3633 0.5198 -0.8865 31 1 -0.3634 -1.0276 -0.0069 32 1 1.7810 -0.1601 2.1360 33 1 1.5919 -1.7201 1.2995 34 1 3.4232 -2.6639 0.0844 35 1 4.9844 -1.8117 0.0103 36 1 4.0569 0.9600 -0.6035 37 1 5.3073 0.0901 -1.5243 38 1 3.9154 0.8067 -2.3712 39 1 3.1170 -0.7875 -4.7443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882518339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:30 Heat of formation + Delta-G solvation = -67.678540 kcal Electronic energy + Delta-G solvation = -30495.974717 eV Core-core repulsion = 25748.580655 eV Total energy + Delta-G solvation = -4747.394063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.116 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.98396 -49.85927 -49.07295 -48.92301 -40.48832 -38.79377 -35.57279 -32.86367 -32.14466 -30.63178 -30.41735 -27.96422 -26.67981 -25.47116 -23.99777 -23.88727 -22.64392 -21.20839 -19.43418 -18.89971 -18.77736 -18.47973 -17.54547 -17.03439 -16.63312 -16.29909 -16.24491 -15.69155 -15.57055 -15.38326 -15.23820 -14.96165 -14.63768 -14.29299 -14.02035 -13.82915 -13.72369 -13.48698 -13.30119 -12.68785 -12.60620 -11.96199 -11.74456 -11.61014 -11.29929 -11.05069 -10.89872 -10.76614 -10.73968 -10.67994 -10.49972 -10.20118 -10.11097 -9.61960 -9.42752 -9.12316 -8.61642 -8.29610 -6.82503 -5.89265 -3.31938 0.02883 0.29146 2.31727 2.59897 3.04446 3.21965 3.30701 3.39168 3.39792 3.49286 3.92503 4.24338 4.38397 4.57547 4.69839 5.02794 5.22129 5.31972 5.39263 5.48142 5.64436 5.74917 5.88407 5.97882 6.03713 6.08732 6.17860 6.36589 6.50968 6.63353 6.70783 6.76171 6.85472 6.91412 6.98412 7.01488 7.49919 7.64890 7.79349 8.30266 9.09158 9.70564 10.26782 11.18568 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.004168 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.169885 B = 6715.886589 C = 7532.764847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.171 3.829 3 H 0.040 0.960 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.162 3.838 7 C 0.015 3.985 8 F -0.099 7.099 9 C 0.336 3.664 10 F -0.087 7.087 11 N -0.525 5.525 12 C 0.337 3.663 13 F -0.087 7.087 14 C -0.008 4.008 15 F -0.098 7.098 16 C 0.019 3.981 17 C 0.194 3.806 18 H 0.107 0.893 19 C -0.140 4.140 20 N -0.584 5.584 21 C -0.255 4.255 22 H 0.073 0.927 23 C 0.006 3.994 24 N -0.897 5.897 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.030 0.970 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -1.557 13.459 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.064 3.936 3 H 0.058 0.942 4 C -0.086 4.086 5 N -0.167 5.167 6 C 0.050 3.950 7 C -0.012 4.012 8 F -0.077 7.077 9 C 0.181 3.819 10 F -0.066 7.066 11 N -0.246 5.246 12 C 0.183 3.817 13 F -0.066 7.066 14 C -0.036 4.036 15 F -0.077 7.077 16 C -0.108 4.108 17 C 0.087 3.913 18 H 0.124 0.876 19 C -0.199 4.199 20 N -0.307 5.307 21 C -0.384 4.384 22 H 0.091 0.909 23 C -0.193 4.193 24 N -0.541 5.541 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.216 1.216 28 H -0.206 1.206 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.097 0.903 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.308 -1.383 13.829 14.286 hybrid contribution -0.723 -0.796 -1.177 1.594 sum 2.585 -2.178 12.651 13.095 Atomic orbital electron populations 1.21793 0.95111 1.01732 1.00924 1.20475 0.93054 0.94265 0.85804 0.94238 1.23174 0.81519 1.01505 1.02353 1.58849 1.13130 1.45334 0.99387 1.19427 0.95225 0.88497 0.91876 1.17452 1.04694 0.87516 0.91563 1.91572 1.76853 1.42741 1.96552 1.17075 0.95432 0.88354 0.81028 1.91717 1.92640 1.78099 1.44124 1.66306 1.20313 1.08718 1.29297 1.17177 0.93174 0.84187 0.87191 1.91721 1.75526 1.42832 1.96523 1.18061 1.09538 0.92889 0.83120 1.91626 1.93559 1.77738 1.44766 1.23934 1.00929 0.95090 0.90811 1.20572 0.83079 0.95613 0.91997 0.87572 1.22016 0.96909 0.99146 1.01796 1.44335 1.03441 1.64732 1.18180 1.19164 0.92954 1.39909 0.86406 0.90911 1.25015 0.97587 0.99924 0.96783 1.69991 1.20961 1.44935 1.18247 0.86340 0.79361 0.79968 0.81327 1.21437 1.21578 1.20589 0.93866 0.91280 0.92628 0.90060 0.92899 0.92210 0.89625 0.95050 0.95680 0.90252 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.93 37.16 0.29 -2.02 16 2 C 0.17 3.22 3.25 -67.49 -0.22 3.00 16 3 H 0.04 0.80 7.64 -51.93 -0.40 0.40 16 4 C 0.04 0.65 4.68 -3.70 -0.02 0.63 16 5 N -0.46 -7.45 4.10 -170.51 -0.70 -8.15 16 6 C 0.16 2.31 5.58 -83.43 -0.47 1.84 16 7 C 0.01 0.20 6.99 -39.08 -0.27 -0.08 16 8 F -0.10 -1.33 15.18 2.25 0.03 -1.30 16 9 C 0.34 4.21 8.41 -17.36 -0.15 4.07 16 10 F -0.09 -1.05 17.20 2.25 0.04 -1.01 16 11 N -0.52 -6.93 10.38 -13.95 -0.14 -7.07 16 12 C 0.34 4.36 8.41 -17.36 -0.15 4.22 16 13 F -0.09 -1.10 17.20 2.25 0.04 -1.06 16 14 C -0.01 -0.11 7.00 -39.08 -0.27 -0.39 16 15 F -0.10 -1.42 12.38 2.25 0.03 -1.40 16 16 C 0.02 0.33 3.39 -3.71 -0.01 0.32 16 17 C 0.19 4.16 2.35 -67.50 -0.16 4.00 16 18 H 0.11 2.60 6.12 -51.93 -0.32 2.28 16 19 C -0.14 -2.95 8.96 37.16 0.33 -2.61 16 20 N -0.58 -13.00 2.73 -157.02 -0.43 -13.43 16 21 C -0.26 -6.27 8.72 -15.06 -0.13 -6.41 16 22 H 0.07 1.75 6.16 -52.48 -0.32 1.43 16 23 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 24 N -0.90 -23.67 9.78 55.49 0.54 -23.13 16 25 Si 0.90 20.39 29.59 -169.99 -5.03 15.36 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.26 7.57 -51.93 -0.39 0.86 16 31 H 0.05 0.94 7.54 -51.93 -0.39 0.55 16 32 H 0.08 1.17 5.99 -51.93 -0.31 0.86 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.09 6.95 -51.93 -0.36 0.73 16 35 H 0.09 1.44 6.44 -51.93 -0.33 1.10 16 36 H 0.03 0.63 7.09 -51.93 -0.37 0.27 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 1.92 6.90 -51.93 -0.36 1.56 16 39 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 321.60 15.07 4.85 4.85 Total: -1.00 -25.04 321.60 -6.03 -31.07 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -3.96 Total: -1.37 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: -1.30 Total: 6.64 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.73 Total: -51.78 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.14 Total: -4.76 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.04 -6.03 -31.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.607 kcal (2) G-P(sol) polarization free energy of solvation -25.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds