Wall clock time and date at job start Tue Mar 31 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.62868 * 2 1 4 4 C 1.53243 * 109.62820 * 120.38573 * 2 1 3 5 5 N 1.46902 * 109.36387 * 173.52540 * 4 2 1 6 6 C 1.39517 * 110.99933 * 172.75851 * 5 4 2 7 7 C 1.39486 * 120.84601 * 299.72412 * 6 5 4 8 8 F 1.35098 * 120.44852 * 359.97363 * 7 6 5 9 9 C 1.38331 * 119.09922 * 179.72978 * 7 6 5 10 10 F 1.35103 * 119.59372 * 180.29095 * 9 7 6 11 11 N 1.32205 * 120.81644 * 0.55457 * 9 7 6 12 12 C 1.32207 * 121.85174 * 359.71536 * 11 9 7 13 13 F 1.35108 * 119.59004 * 180.02562 * 12 11 9 14 14 C 1.38333 * 120.82139 * 0.02562 * 12 11 9 15 15 F 1.35096 * 120.45062 * 180.02562 * 14 12 11 16 16 C 1.46895 * 111.26763 * 296.93908 * 5 4 2 17 17 C 1.53231 * 109.36407 * 63.06281 * 16 5 4 18 18 H 1.09005 * 109.62736 * 186.47144 * 17 16 5 19 19 C 1.52998 * 109.63197 * 65.89225 * 17 16 5 20 20 N 1.47074 * 108.52447 * 306.17998 * 17 16 5 21 21 C 1.36939 * 120.88385 * 231.16516 * 20 17 16 22 22 H 1.08004 * 120.00230 * 153.39907 * 21 20 17 23 23 C 1.38803 * 120.00208 * 333.39852 * 21 20 17 24 24 N 1.31624 * 119.99644 * 343.00545 * 23 21 20 25 25 Si 1.86802 * 120.00399 * 163.00351 * 23 21 20 26 26 H 1.48496 * 109.47320 * 89.99981 * 25 23 21 27 27 H 1.48498 * 109.47074 * 210.00237 * 25 23 21 28 28 H 1.48499 * 109.46765 * 329.99828 * 25 23 21 29 29 H 1.09004 * 109.47104 * 299.61336 * 1 2 3 30 30 H 1.08997 * 109.46956 * 59.61377 * 1 2 3 31 31 H 1.08998 * 109.47602 * 179.61491 * 1 2 3 32 32 H 1.09002 * 109.49525 * 293.50003 * 4 2 1 33 33 H 1.08999 * 109.49386 * 53.54918 * 4 2 1 34 34 H 1.08996 * 109.47022 * 303.10052 * 16 5 4 35 35 H 1.09004 * 109.51211 * 183.05336 * 16 5 4 36 36 H 1.09001 * 109.46775 * 300.97270 * 19 17 16 37 37 H 1.08998 * 109.47219 * 60.96491 * 19 17 16 38 38 H 1.08999 * 109.47766 * 180.96933 * 19 17 16 39 39 H 0.97001 * 119.99570 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0447 -0.7301 1.2451 5 7 3.5054 -0.8630 1.1628 6 6 4.0285 -1.3758 2.3502 7 6 3.8584 -0.6988 3.5578 8 9 3.1820 0.4700 3.5981 9 6 4.3874 -1.2429 4.7144 10 9 4.2235 -0.5986 5.8905 11 7 5.0559 -2.3830 4.6823 12 6 5.2426 -3.0509 3.5567 13 9 5.9326 -4.2123 3.5767 14 6 4.7402 -2.5754 2.3587 15 9 4.9350 -3.2642 1.2130 16 6 3.9015 -1.6871 0.0131 17 6 3.4629 -0.9963 -1.2824 18 1 3.6508 -1.6550 -2.1303 19 6 4.2416 0.3090 -1.4580 20 7 2.0241 -0.7049 -1.1926 21 6 1.1673 -1.0795 -2.1929 22 1 0.1266 -1.2648 -1.9714 23 6 1.6362 -1.2213 -3.4916 24 7 2.7891 -0.6881 -3.8368 25 14 0.6313 -2.1686 -4.7494 26 1 -0.2910 -1.2382 -5.4486 27 1 1.5427 -2.7984 -5.7384 28 1 -0.1566 -3.2225 -4.0612 29 1 -0.3633 0.5078 0.8935 30 1 -0.3633 0.5198 -0.8865 31 1 -0.3634 -1.0276 -0.0069 32 1 1.7810 -0.1601 2.1360 33 1 1.5919 -1.7201 1.2995 34 1 3.4232 -2.6639 0.0844 35 1 4.9844 -1.8117 0.0103 36 1 4.0569 0.9600 -0.6035 37 1 5.3073 0.0901 -1.5243 38 1 3.9154 0.8067 -2.3712 39 1 3.1170 -0.7875 -4.7443 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882518339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:29 Heat of formation + Delta-G solvation = -81.099710 kcal Electronic energy + Delta-G solvation = -30496.556703 eV Core-core repulsion = 25748.580655 eV Total energy + Delta-G solvation = -4747.976048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.116 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.06285 -50.88706 -50.14426 -49.95962 -41.64775 -40.14665 -37.05002 -34.43421 -33.70987 -32.06907 -31.48226 -29.65443 -28.05487 -26.91681 -25.53128 -25.07176 -23.94655 -22.71106 -20.81798 -20.16345 -19.96945 -19.57718 -18.63605 -18.15473 -18.05714 -17.55524 -17.37605 -16.86937 -16.85369 -16.81130 -16.36741 -16.26823 -15.87347 -15.69835 -15.28568 -15.19235 -15.08478 -15.05315 -14.68856 -13.91089 -13.75887 -13.47666 -13.38473 -13.05621 -12.85341 -12.76621 -12.44252 -12.34653 -12.25623 -11.99093 -11.94139 -11.83637 -11.71629 -11.26952 -11.03535 -10.47395 -10.16042 -9.58237 -8.62354 -7.80184 -5.22903 -1.01387 -0.80493 1.25681 1.48621 1.52623 1.54073 1.58980 1.94549 2.10360 2.32716 2.54572 2.85298 3.15467 3.34958 3.44209 3.50500 3.59638 3.97119 4.07298 4.21858 4.28694 4.37808 4.44681 4.61696 4.66114 4.71549 4.87168 4.92391 5.01124 5.09294 5.21492 5.36256 5.37644 5.54393 5.58550 5.62050 5.71749 5.80414 5.98464 6.44695 7.21890 7.89953 8.42462 9.25504 Molecular weight = 333.12amu Principal moments of inertia in cm(-1) A = 0.017977 B = 0.004168 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.169885 B = 6715.886589 C = 7532.764847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.165 3.835 3 H 0.026 0.974 4 C 0.049 3.951 5 N -0.466 5.466 6 C 0.157 3.843 7 C 0.026 3.974 8 F -0.098 7.098 9 C 0.348 3.652 10 F -0.080 7.080 11 N -0.527 5.527 12 C 0.348 3.652 13 F -0.084 7.084 14 C -0.006 4.006 15 F -0.104 7.104 16 C 0.037 3.963 17 C 0.192 3.808 18 H 0.071 0.929 19 C -0.123 4.123 20 N -0.599 5.599 21 C -0.252 4.252 22 H 0.076 0.924 23 C -0.044 4.044 24 N -0.922 5.922 25 Si 0.954 3.046 26 H -0.291 1.291 27 H -0.298 1.298 28 H -0.274 1.274 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -1.899 15.774 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 H 0.044 0.956 4 C -0.076 4.076 5 N -0.178 5.178 6 C 0.046 3.954 7 C -0.001 4.001 8 F -0.077 7.077 9 C 0.194 3.806 10 F -0.059 7.059 11 N -0.249 5.249 12 C 0.193 3.807 13 F -0.062 7.062 14 C -0.033 4.033 15 F -0.083 7.083 16 C -0.090 4.090 17 C 0.085 3.915 18 H 0.089 0.911 19 C -0.182 4.182 20 N -0.322 5.322 21 C -0.382 4.382 22 H 0.094 0.906 23 C -0.240 4.240 24 N -0.568 5.568 25 Si 0.784 3.216 26 H -0.218 1.218 27 H -0.225 1.225 28 H -0.199 1.199 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.055 -1.728 16.188 16.564 hybrid contribution -0.633 -0.669 -1.764 1.990 sum 2.422 -2.397 14.424 14.821 Atomic orbital electron populations 1.21714 0.93602 1.01754 1.01705 1.20638 0.94411 0.93546 0.85533 0.95597 1.23018 0.81613 1.01453 1.01517 1.58778 1.13385 1.45859 0.99745 1.19302 0.95703 0.89023 0.91396 1.17324 1.04339 0.87232 0.91182 1.91579 1.76819 1.42753 1.96516 1.16947 0.94720 0.87942 0.81008 1.91743 1.92485 1.77924 1.43737 1.66352 1.20321 1.08910 1.29296 1.17035 0.92776 0.84092 0.86792 1.91735 1.75384 1.42647 1.96479 1.18023 1.09446 0.92731 0.83105 1.91610 1.93594 1.77851 1.45205 1.23589 1.01290 0.94301 0.89786 1.20427 0.83079 0.95157 0.92835 0.91080 1.21806 0.97544 0.98884 1.00012 1.44540 1.03572 1.65370 1.18716 1.19440 0.93406 1.38465 0.86925 0.90601 1.25601 0.98647 1.01336 0.98375 1.70147 1.22281 1.46457 1.17873 0.85488 0.77929 0.78852 0.79361 1.21781 1.22506 1.19945 0.90366 0.93275 0.92857 0.87763 0.92818 0.92726 0.88608 0.94564 0.94406 0.93812 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.93 71.98 0.57 -3.59 16 2 C 0.17 6.04 3.25 44.96 0.15 6.19 16 3 H 0.03 1.04 7.64 -2.39 -0.02 1.02 16 4 C 0.05 1.48 4.68 86.38 0.40 1.89 16 5 N -0.47 -14.36 4.10 -693.37 -2.84 -17.20 16 6 C 0.16 4.08 5.58 38.52 0.21 4.29 16 7 C 0.03 0.61 6.99 22.59 0.16 0.77 16 8 F -0.10 -2.33 15.18 44.97 0.68 -1.65 16 9 C 0.35 7.67 8.41 84.66 0.71 8.38 16 10 F -0.08 -1.68 17.20 44.97 0.77 -0.90 16 11 N -0.53 -12.38 10.38 -198.05 -2.06 -14.44 16 12 C 0.35 8.10 8.41 84.66 0.71 8.81 16 13 F -0.08 -1.92 17.20 44.97 0.77 -1.15 16 14 C -0.01 -0.14 7.00 22.59 0.16 0.02 16 15 F -0.10 -2.84 12.38 44.97 0.56 -2.28 16 16 C 0.04 1.29 3.39 86.38 0.29 1.58 16 17 C 0.19 8.30 2.35 44.96 0.11 8.41 16 18 H 0.07 3.60 6.12 -2.38 -0.01 3.58 16 19 C -0.12 -5.27 8.96 71.98 0.65 -4.63 16 20 N -0.60 -26.75 2.73 -650.68 -1.78 -28.53 16 21 C -0.25 -12.52 8.72 84.03 0.73 -11.79 16 22 H 0.08 3.65 6.16 -2.91 -0.02 3.63 16 23 C -0.04 -2.27 4.94 84.86 0.42 -1.85 16 24 N -0.92 -50.29 9.78 21.65 0.21 -50.08 16 25 Si 0.95 42.70 29.59 68.60 2.03 44.73 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.75 7.57 -2.39 -0.02 1.73 16 31 H 0.05 1.72 7.54 -2.39 -0.02 1.70 16 32 H 0.10 2.67 5.99 -2.39 -0.01 2.65 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.94 6.95 -2.39 -0.02 1.93 16 35 H 0.10 3.12 6.44 -2.38 -0.02 3.10 16 36 H 0.04 1.47 7.09 -2.39 -0.02 1.45 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.04 2.17 6.90 -2.39 -0.02 2.15 16 39 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 Total: -1.00 -53.74 321.60 4.75 -48.99 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: 1.13 Total: 4.02 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: 5.27 Total: 18.49 kcal Atomic # 7 Polarization: -103.79 SS G_CDS: -6.46 Total: -110.25 kcal Atomic # 9 Polarization: -8.77 SS G_CDS: 2.79 Total: -5.98 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -53.74 4.75 -48.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882518339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.110 kcal (2) G-P(sol) polarization free energy of solvation -53.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds