Wall clock time and date at job start Tue Mar 31 2020 18:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 O 1.42895 * 109.47036 * 185.00211 * 3 2 1 5 5 N 1.46897 * 109.47337 * 239.99636 * 2 1 3 6 6 C 1.46904 * 110.99941 * 60.00198 * 5 2 1 7 7 C 1.52998 * 109.47550 * 179.97438 * 6 5 2 8 8 H 1.09001 * 109.46599 * 59.99618 * 7 6 5 9 9 O 1.42896 * 109.46964 * 299.99981 * 7 6 5 10 10 C 1.50698 * 109.47163 * 179.97438 * 7 6 5 11 11 H 1.07996 * 120.00269 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99460 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00318 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99672 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47148 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47075 * 119.99688 * 14 12 10 17 17 H 1.48500 * 109.47197 * 239.99754 * 14 12 10 18 18 C 1.50699 * 109.47264 * 119.99418 * 2 1 3 19 19 C 1.38265 * 119.99653 * 119.72982 * 18 2 1 20 20 C 1.38212 * 119.99674 * 179.77175 * 19 18 2 21 21 C 1.38258 * 120.00101 * 0.50206 * 20 19 18 22 22 C 1.38207 * 119.99890 * 359.75020 * 21 20 19 23 23 C 1.50706 * 119.99941 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.46718 * 270.01782 * 23 22 21 25 25 F 1.39896 * 109.47062 * 30.02247 * 23 22 21 26 26 F 1.39903 * 109.46882 * 150.02140 * 23 22 21 27 27 C 1.38205 * 120.00376 * 300.00703 * 18 2 1 28 28 H 1.08995 * 109.47070 * 60.00530 * 1 2 3 29 29 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47018 * 300.00144 * 1 2 3 31 31 H 1.09001 * 109.47002 * 304.99688 * 3 2 1 32 32 H 1.08993 * 109.46955 * 65.00125 * 3 2 1 33 33 H 0.96700 * 113.99916 * 179.97438 * 4 3 2 34 34 H 1.00903 * 111.00118 * 183.95098 * 5 2 1 35 35 H 1.08999 * 109.46962 * 300.00165 * 6 5 2 36 36 H 1.09001 * 109.47429 * 59.99577 * 6 5 2 37 37 H 0.96696 * 114.00354 * 299.99541 * 9 7 6 38 38 H 0.97001 * 119.99992 * 180.02562 * 13 12 10 39 39 H 1.07999 * 120.00113 * 359.97438 * 19 18 2 40 40 H 1.08004 * 119.99879 * 180.23241 * 20 19 18 41 41 H 1.08006 * 119.99741 * 179.72657 * 21 20 19 42 42 H 1.08004 * 119.99893 * 359.97438 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4641 1.4443 -0.1175 5 7 2.0197 -0.6925 -1.1993 6 6 1.5487 -0.0265 -2.4211 7 6 2.0783 -0.7743 -3.6463 8 1 1.7152 -1.8019 -3.6296 9 8 3.5071 -0.7735 -3.6240 10 6 1.5946 -0.0913 -4.8995 11 1 0.9721 0.7884 -4.8292 12 6 1.9468 -0.5896 -6.1359 13 7 2.7044 -1.6612 -6.2215 14 14 1.3479 0.2574 -7.6894 15 1 0.5165 1.4322 -7.3236 16 1 2.5153 0.7065 -8.4899 17 1 0.5352 -0.6935 -8.4898 18 6 2.0324 -0.7103 1.2305 19 6 2.8226 -1.8377 1.1037 20 6 3.2873 -2.4864 2.2322 21 6 2.9533 -2.0140 3.4879 22 6 2.1590 -0.8901 3.6147 23 6 1.7944 -0.3755 4.9834 24 9 0.6046 -0.9778 5.4063 25 9 2.8189 -0.6826 5.8852 26 9 1.6213 1.0117 4.9292 27 6 1.6984 -0.2381 2.4858 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 1.9816 -0.8419 32 1 1.7517 1.9298 0.9313 33 1 3.8571 2.3278 -0.1245 34 1 3.0263 -0.7626 -1.1908 35 1 0.4589 -0.0266 -2.4379 36 1 1.9121 1.0011 -2.4379 37 1 3.9002 0.1099 -3.6370 38 1 2.9525 -2.0115 -7.0914 39 1 3.0796 -2.2095 0.1228 40 1 3.9077 -3.3649 2.1331 41 1 3.3128 -2.5235 4.3698 42 1 1.0777 0.6402 2.5848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929670695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:06 Heat of formation + Delta-G solvation = -222.093638 kcal Electronic energy + Delta-G solvation = -29453.895210 eV Core-core repulsion = 24790.972761 eV Total energy + Delta-G solvation = -4662.922450 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.32778 -47.84979 -47.78851 -40.18716 -37.92701 -36.02691 -34.91336 -32.15533 -32.00717 -31.72258 -29.39631 -27.80777 -26.16749 -26.00538 -24.59530 -22.94750 -22.05667 -20.64523 -19.49205 -18.66009 -18.53653 -18.09571 -17.35220 -16.91716 -16.39097 -15.86352 -15.28916 -15.12007 -14.77954 -14.64865 -14.58603 -14.35892 -14.25584 -14.12709 -14.04814 -13.95787 -13.85355 -13.57133 -13.27243 -12.82210 -12.74430 -12.44204 -12.26800 -12.10734 -11.86950 -11.72136 -11.27453 -11.20236 -10.98497 -10.93888 -10.79915 -10.45266 -10.08541 -9.98191 -9.23942 -9.03580 -8.91995 -8.59056 -8.19390 -7.84365 -6.02090 -4.20318 0.90480 1.17014 2.50257 3.24850 3.33348 3.35810 3.42954 3.56072 3.84840 4.08658 4.27093 4.36043 4.50489 4.65156 4.75436 4.91844 5.12609 5.22632 5.25322 5.26563 5.31177 5.42253 5.49903 5.62819 5.71170 5.76091 5.90896 6.05574 6.12777 6.21609 6.26726 6.36801 6.41085 6.49547 6.72027 6.88606 7.48077 7.59360 7.74435 7.83042 7.98146 8.21388 8.83348 9.38337 9.57386 11.02132 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026892 B = 0.002638 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.951783 B =10610.527372 C =10914.427962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.152 3.848 3 C 0.049 3.951 4 O -0.563 6.563 5 N -0.668 5.668 6 C 0.033 3.967 7 C 0.233 3.767 8 H 0.062 0.938 9 O -0.564 6.564 10 C -0.572 4.572 11 H 0.054 0.946 12 C 0.080 3.920 13 N -0.857 5.857 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.054 4.054 19 C -0.060 4.060 20 C -0.121 4.121 21 C -0.080 4.080 22 C -0.188 4.188 23 C 0.509 3.491 24 F -0.179 7.179 25 F -0.179 7.179 26 F -0.180 7.180 27 C -0.071 4.071 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.377 0.623 34 H 0.354 0.646 35 H 0.067 0.933 36 H 0.021 0.979 37 H 0.341 0.659 38 H 0.260 0.740 39 H 0.148 0.852 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 3.784 20.997 21.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.060 3.940 3 C -0.031 4.031 4 O -0.367 6.367 5 N -0.301 5.301 6 C -0.096 4.096 7 C 0.175 3.825 8 H 0.080 0.920 9 O -0.366 6.366 10 C -0.611 4.611 11 H 0.072 0.928 12 C -0.127 4.127 13 N -0.493 5.493 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.054 4.054 19 C -0.078 4.078 20 C -0.139 4.139 21 C -0.098 4.098 22 C -0.190 4.190 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.161 7.161 26 F -0.161 7.161 27 C -0.090 4.090 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.224 0.776 34 H 0.175 0.825 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.185 0.815 38 H 0.069 0.931 39 H 0.165 0.835 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.582 1.878 20.908 21.051 hybrid contribution 0.194 2.674 -0.652 2.759 sum -1.389 4.552 20.255 20.807 Atomic orbital electron populations 1.21874 0.92237 1.03551 1.01901 1.19831 0.95223 0.89314 0.89679 1.22974 0.82029 0.98355 0.99765 1.86465 1.19628 1.33544 1.97112 1.60784 1.17808 1.51455 1.00063 1.22929 1.00019 0.95930 0.90678 1.19393 0.78409 0.96397 0.88281 0.91995 1.86577 1.22324 1.30892 1.96804 1.21648 1.34114 1.13742 0.91561 0.92777 1.25027 0.94141 0.94456 0.99031 1.70088 1.33890 1.21172 1.24112 0.86638 0.78646 0.79681 0.83506 1.19800 1.20927 1.20872 1.19675 0.97003 0.95661 0.93108 1.21496 0.93139 0.93206 1.00004 1.21206 1.00488 1.00593 0.91597 1.20870 0.95897 0.94273 0.98794 1.19780 1.06886 1.01269 0.91049 1.18358 0.74495 0.75272 0.86333 1.93219 1.47953 1.83364 1.91472 1.93175 1.59582 1.92819 1.70498 1.93179 1.95315 1.30913 1.96689 1.20641 0.98406 0.98933 0.91006 0.91282 0.90769 0.92556 0.92684 0.93958 0.77610 0.82490 0.91505 0.96062 0.81532 0.93056 0.83477 0.84839 0.85177 0.85344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.05 37.16 0.30 -1.42 16 2 C 0.15 2.06 0.61 -132.75 -0.08 1.98 16 3 C 0.05 0.60 5.29 37.16 0.20 0.80 16 4 O -0.56 -7.25 12.73 -35.23 -0.45 -7.70 16 5 N -0.67 -11.13 5.05 -101.14 -0.51 -11.64 16 6 C 0.03 0.63 4.54 -3.82 -0.02 0.62 16 7 C 0.23 5.69 3.09 -27.89 -0.09 5.60 16 8 H 0.06 1.71 8.14 -51.93 -0.42 1.29 16 9 O -0.56 -13.97 12.07 -35.23 -0.43 -14.39 16 10 C -0.57 -15.29 8.76 -34.44 -0.30 -15.60 16 11 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 12 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 13 N -0.86 -25.01 12.84 55.43 0.71 -24.30 16 14 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.05 -0.70 4.54 -104.62 -0.48 -1.17 16 19 C -0.06 -0.78 9.14 -39.58 -0.36 -1.14 16 20 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 21 C -0.08 -0.85 9.40 -39.59 -0.37 -1.22 16 22 C -0.19 -2.14 5.45 -104.62 -0.57 -2.71 16 23 C 0.51 5.57 3.36 36.01 0.12 5.69 16 24 F -0.18 -2.01 17.30 2.25 0.04 -1.98 16 25 F -0.18 -1.94 16.46 2.25 0.04 -1.90 16 26 F -0.18 -2.00 16.46 2.25 0.04 -1.96 16 27 C -0.07 -0.84 8.01 -39.59 -0.32 -1.16 16 28 H 0.07 0.89 6.40 -51.93 -0.33 0.55 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 31 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 32 H 0.04 0.45 7.22 -51.93 -0.38 0.08 16 33 H 0.38 3.30 9.12 45.56 0.42 3.71 16 34 H 0.35 6.29 6.36 -39.29 -0.25 6.04 16 35 H 0.07 1.27 6.30 -51.93 -0.33 0.95 16 36 H 0.02 0.40 6.42 -51.93 -0.33 0.07 16 37 H 0.34 7.64 9.04 45.56 0.41 8.05 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 39 H 0.15 2.05 6.41 -52.49 -0.34 1.72 16 40 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.13 1.12 7.60 -52.48 -0.40 0.72 16 42 H 0.13 1.34 6.62 -52.48 -0.35 0.99 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -30.44 355.45 -6.10 -36.54 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -3.41 Total: 15.54 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.46 Total: -9.35 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.20 Total: -35.94 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.87 Total: -22.09 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.44 -6.10 -36.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929670695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.558 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds