Wall clock time and date at job start Tue Mar 31 2020 18:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 O 1.42895 * 109.47036 * 185.00211 * 3 2 1 5 5 N 1.46897 * 109.47337 * 239.99636 * 2 1 3 6 6 C 1.46904 * 110.99941 * 60.00198 * 5 2 1 7 7 C 1.52998 * 109.47550 * 179.97438 * 6 5 2 8 8 H 1.09001 * 109.46599 * 59.99618 * 7 6 5 9 9 O 1.42896 * 109.46964 * 299.99981 * 7 6 5 10 10 C 1.50698 * 109.47163 * 179.97438 * 7 6 5 11 11 H 1.07996 * 120.00269 * 0.02562 * 10 7 6 12 12 C 1.37880 * 119.99460 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00318 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 119.99672 * 180.02562 * 12 10 7 15 15 H 1.48501 * 109.47148 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47075 * 119.99688 * 14 12 10 17 17 H 1.48500 * 109.47197 * 239.99754 * 14 12 10 18 18 C 1.50699 * 109.47264 * 119.99418 * 2 1 3 19 19 C 1.38265 * 119.99653 * 119.72982 * 18 2 1 20 20 C 1.38212 * 119.99674 * 179.77175 * 19 18 2 21 21 C 1.38258 * 120.00101 * 0.50206 * 20 19 18 22 22 C 1.38207 * 119.99890 * 359.75020 * 21 20 19 23 23 C 1.50706 * 119.99941 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.46718 * 270.01782 * 23 22 21 25 25 F 1.39896 * 109.47062 * 30.02247 * 23 22 21 26 26 F 1.39903 * 109.46882 * 150.02140 * 23 22 21 27 27 C 1.38205 * 120.00376 * 300.00703 * 18 2 1 28 28 H 1.08995 * 109.47070 * 60.00530 * 1 2 3 29 29 H 1.09002 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47018 * 300.00144 * 1 2 3 31 31 H 1.09001 * 109.47002 * 304.99688 * 3 2 1 32 32 H 1.08993 * 109.46955 * 65.00125 * 3 2 1 33 33 H 0.96700 * 113.99916 * 179.97438 * 4 3 2 34 34 H 1.00903 * 111.00118 * 183.95098 * 5 2 1 35 35 H 1.08999 * 109.46962 * 300.00165 * 6 5 2 36 36 H 1.09001 * 109.47429 * 59.99577 * 6 5 2 37 37 H 0.96696 * 114.00354 * 299.99541 * 9 7 6 38 38 H 0.97001 * 119.99992 * 180.02562 * 13 12 10 39 39 H 1.07999 * 120.00113 * 359.97438 * 19 18 2 40 40 H 1.08004 * 119.99879 * 180.23241 * 20 19 18 41 41 H 1.08006 * 119.99741 * 179.72657 * 21 20 19 42 42 H 1.08004 * 119.99893 * 359.97438 * 27 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4641 1.4443 -0.1175 5 7 2.0197 -0.6925 -1.1993 6 6 1.5487 -0.0265 -2.4211 7 6 2.0783 -0.7743 -3.6463 8 1 1.7152 -1.8019 -3.6296 9 8 3.5071 -0.7735 -3.6240 10 6 1.5946 -0.0913 -4.8995 11 1 0.9721 0.7884 -4.8292 12 6 1.9468 -0.5896 -6.1359 13 7 2.7044 -1.6612 -6.2215 14 14 1.3479 0.2574 -7.6894 15 1 0.5165 1.4322 -7.3236 16 1 2.5153 0.7065 -8.4899 17 1 0.5352 -0.6935 -8.4898 18 6 2.0324 -0.7103 1.2305 19 6 2.8226 -1.8377 1.1037 20 6 3.2873 -2.4864 2.2322 21 6 2.9533 -2.0140 3.4879 22 6 2.1590 -0.8901 3.6147 23 6 1.7944 -0.3755 4.9834 24 9 0.6046 -0.9778 5.4063 25 9 2.8189 -0.6826 5.8852 26 9 1.6213 1.0117 4.9292 27 6 1.6984 -0.2381 2.4858 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6054 1.9816 -0.8419 32 1 1.7517 1.9298 0.9313 33 1 3.8571 2.3278 -0.1245 34 1 3.0263 -0.7626 -1.1908 35 1 0.4589 -0.0266 -2.4379 36 1 1.9121 1.0011 -2.4379 37 1 3.9002 0.1099 -3.6370 38 1 2.9525 -2.0115 -7.0914 39 1 3.0796 -2.2095 0.1228 40 1 3.9077 -3.3649 2.1331 41 1 3.3128 -2.5235 4.3698 42 1 1.0777 0.6402 2.5848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929670695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:05 Heat of formation + Delta-G solvation = -244.791428 kcal Electronic energy + Delta-G solvation = -29454.879460 eV Core-core repulsion = 24790.972761 eV Total energy + Delta-G solvation = -4663.906700 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.18083 -48.69796 -48.64653 -41.17441 -39.04381 -37.62945 -36.15531 -34.23349 -33.02852 -32.89985 -30.50773 -29.47104 -27.14019 -27.08082 -26.12065 -24.16834 -22.95116 -22.28518 -20.59352 -19.51301 -19.40587 -19.10945 -18.87676 -18.28776 -17.43915 -16.96243 -16.62583 -16.43437 -16.38182 -15.76543 -15.70842 -15.51633 -15.28504 -15.14537 -15.06394 -14.86980 -14.82077 -14.80301 -14.60068 -14.21377 -13.80946 -13.58941 -13.30312 -13.24717 -13.17428 -12.95424 -12.84265 -12.76935 -12.55417 -12.46077 -12.12938 -11.97945 -11.58453 -11.01654 -10.92247 -10.68955 -10.14628 -10.12813 -9.84116 -9.18825 -8.11627 -6.36978 -0.00365 0.28850 1.40273 1.41927 1.53387 1.64101 2.39423 2.52448 2.69481 2.96876 3.10740 3.15102 3.41761 3.52975 3.55590 3.87746 4.09179 4.11154 4.28619 4.30135 4.35254 4.36949 4.44739 4.52633 4.61513 4.68777 4.72643 4.80033 4.82722 5.00309 5.15273 5.16920 5.28091 5.40494 5.50935 5.65159 5.78621 5.81983 6.06342 6.27657 6.55038 6.77519 6.85469 7.35882 7.58042 8.93066 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.026892 B = 0.002638 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.951783 B =10610.527372 C =10914.427962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 C 0.052 3.948 4 O -0.581 6.581 5 N -0.672 5.672 6 C 0.057 3.943 7 C 0.234 3.766 8 H 0.020 0.980 9 O -0.577 6.577 10 C -0.584 4.584 11 H 0.059 0.941 12 C 0.025 3.975 13 N -0.899 5.899 14 Si 0.959 3.041 15 H -0.262 1.262 16 H -0.280 1.280 17 H -0.281 1.281 18 C -0.063 4.063 19 C -0.080 4.080 20 C -0.119 4.119 21 C -0.078 4.078 22 C -0.193 4.193 23 C 0.515 3.485 24 F -0.180 7.180 25 F -0.178 7.178 26 F -0.180 7.180 27 C -0.073 4.073 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.347 0.653 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.352 0.648 38 H 0.260 0.740 39 H 0.129 0.871 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.426 5.097 22.300 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.057 3.943 3 C -0.027 4.027 4 O -0.389 6.389 5 N -0.304 5.304 6 C -0.073 4.073 7 C 0.176 3.824 8 H 0.038 0.962 9 O -0.380 6.380 10 C -0.622 4.622 11 H 0.078 0.922 12 C -0.177 4.177 13 N -0.536 5.536 14 Si 0.784 3.216 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.064 4.064 19 C -0.098 4.098 20 C -0.136 4.136 21 C -0.096 4.096 22 C -0.194 4.194 23 C 0.461 3.539 24 F -0.162 7.162 25 F -0.159 7.159 26 F -0.161 7.161 27 C -0.091 4.091 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.244 0.756 34 H 0.167 0.833 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.196 0.804 38 H 0.069 0.931 39 H 0.147 0.853 40 H 0.172 0.828 41 H 0.170 0.830 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.058 3.220 22.230 22.556 hybrid contribution 0.380 2.232 -0.967 2.461 sum -1.678 5.452 21.264 22.015 Atomic orbital electron populations 1.21878 0.91433 1.03190 1.02918 1.19946 0.95849 0.90073 0.88463 1.22912 0.81876 0.97281 1.00679 1.86430 1.19919 1.35343 1.97182 1.60690 1.17247 1.52118 1.00383 1.22462 0.99682 0.95291 0.89816 1.19213 0.78308 0.94602 0.90294 0.96166 1.86517 1.22648 1.31847 1.96977 1.22053 1.33742 1.13745 0.92650 0.92244 1.25892 0.94263 0.95041 1.02531 1.70229 1.35582 1.22917 1.24882 0.85529 0.78145 0.78754 0.79220 1.18634 1.20622 1.20675 1.19613 0.97636 0.95899 0.93236 1.21478 0.94326 0.94038 0.99981 1.21416 1.00184 1.00923 0.91111 1.21145 0.95173 0.93938 0.99355 1.19912 1.06866 1.01474 0.91149 1.18241 0.74407 0.75174 0.86094 1.93219 1.48088 1.83404 1.91472 1.93180 1.59510 1.92804 1.70422 1.93179 1.95315 1.30965 1.96682 1.20726 0.98502 0.99383 0.90484 0.91876 0.91831 0.89897 0.93218 0.91647 0.75645 0.83310 0.91345 0.95557 0.80402 0.93097 0.85313 0.82816 0.82991 0.83966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.05 71.98 0.58 -2.66 16 2 C 0.15 3.90 0.61 2.78 0.00 3.90 16 3 C 0.05 1.20 5.29 71.98 0.38 1.59 16 4 O -0.58 -14.24 12.73 -148.98 -1.90 -16.14 16 5 N -0.67 -22.67 5.05 -473.89 -2.39 -25.06 16 6 C 0.06 2.19 4.54 86.30 0.39 2.58 16 7 C 0.23 11.72 3.09 29.85 0.09 11.81 16 8 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 9 O -0.58 -29.32 12.07 -148.98 -1.80 -31.12 16 10 C -0.58 -31.45 8.76 25.60 0.22 -31.23 16 11 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 12 C 0.03 1.39 5.40 84.66 0.46 1.85 16 13 N -0.90 -53.57 12.84 21.45 0.28 -53.29 16 14 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 15 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 C -0.06 -1.57 4.54 -19.87 -0.09 -1.66 16 19 C -0.08 -2.05 9.14 22.27 0.20 -1.84 16 20 C -0.12 -2.43 10.05 22.27 0.22 -2.21 16 21 C -0.08 -1.48 9.40 22.27 0.21 -1.27 16 22 C -0.19 -3.96 5.45 -19.86 -0.11 -4.07 16 23 C 0.51 10.07 3.36 71.24 0.24 10.31 16 24 F -0.18 -3.69 17.30 44.97 0.78 -2.91 16 25 F -0.18 -3.43 16.46 44.97 0.74 -2.69 16 26 F -0.18 -3.59 16.46 44.97 0.74 -2.85 16 27 C -0.07 -1.56 8.01 22.27 0.18 -1.38 16 28 H 0.06 1.55 6.40 -2.39 -0.02 1.54 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.49 7.39 -2.39 -0.02 1.48 16 31 H 0.05 1.20 6.68 -2.39 -0.02 1.18 16 32 H 0.07 1.21 7.22 -2.39 -0.02 1.20 16 33 H 0.39 6.27 9.12 -74.06 -0.68 5.59 16 34 H 0.35 12.60 6.36 -89.69 -0.57 12.03 16 35 H 0.07 2.61 6.30 -2.39 -0.02 2.60 16 36 H 0.03 0.99 6.42 -2.39 -0.02 0.98 16 37 H 0.35 15.99 9.04 -74.06 -0.67 15.32 16 38 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.13 3.74 6.41 -2.91 -0.02 3.72 16 40 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 41 H 0.15 2.17 7.60 -2.91 -0.02 2.15 16 42 H 0.14 2.58 6.62 -2.91 -0.02 2.56 16 Total: -1.00 -65.41 355.45 0.65 -64.76 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.81 Total: 38.71 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 2.98 Total: -14.27 kcal Atomic # 7 Polarization: -76.24 SS G_CDS: -2.12 Total: -78.36 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -3.69 Total: -47.26 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 2.26 Total: -8.45 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -65.41 0.65 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929670695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.028 kcal (2) G-P(sol) polarization free energy of solvation -65.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds