Wall clock time and date at job start Tue Mar 31 2020 17:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46962 * 2 1 4 4 C 1.50699 * 109.47255 * 240.00223 * 2 1 3 5 5 O 1.21296 * 119.99814 * 264.72235 * 4 2 1 6 6 N 1.34770 * 120.00311 * 84.71745 * 4 2 1 7 7 C 1.40162 * 120.00515 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.96739 * 359.72370 * 7 6 4 9 9 C 1.35244 * 107.86551 * 179.82744 * 8 7 6 10 10 N 1.34969 * 107.85574 * 0.42537 * 9 8 7 11 11 C 1.46505 * 125.96890 * 179.69184 * 10 9 8 12 12 C 1.50697 * 109.46828 * 125.01742 * 11 10 9 13 13 H 1.08008 * 120.00359 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00262 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99393 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00124 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47429 * 90.00223 * 16 14 12 18 18 H 1.48501 * 109.46792 * 210.00153 * 16 14 12 19 19 H 1.48497 * 109.47238 * 329.99557 * 16 14 12 20 20 N 1.31209 * 125.97674 * 180.02562 * 7 6 4 21 21 C 1.50693 * 109.46979 * 119.99784 * 2 1 3 22 22 C 1.38244 * 119.97483 * 232.43410 * 21 2 1 23 23 C 1.38203 * 120.02576 * 179.97438 * 22 21 2 24 24 C 1.38460 * 119.97232 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.02417 * 179.97438 * 24 23 22 26 26 C 1.38459 * 119.95116 * 0.24710 * 24 23 22 27 27 C 1.38200 * 119.97251 * 359.47865 * 26 24 23 28 28 H 1.08998 * 109.47290 * 299.99786 * 1 2 3 29 29 H 1.09006 * 109.47390 * 59.99875 * 1 2 3 30 30 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 31 31 H 0.96703 * 113.99806 * 180.02562 * 3 2 1 32 32 H 0.97009 * 120.00030 * 0.02562 * 6 4 2 33 33 H 1.08000 * 126.07030 * 359.97438 * 8 7 6 34 34 H 1.07997 * 126.06731 * 180.12958 * 9 8 7 35 35 H 1.08996 * 109.46960 * 245.01588 * 11 10 9 36 36 H 1.08994 * 109.47457 * 5.02005 * 11 10 9 37 37 H 0.97003 * 119.99616 * 180.02562 * 15 14 12 38 38 H 1.07997 * 119.98919 * 359.97438 * 22 21 2 39 39 H 1.08000 * 120.01548 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.01318 * 179.72726 * 26 24 23 41 41 H 1.07997 * 119.99082 * 180.27194 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3256 -1.8860 -1.1748 6 7 2.1557 -0.0394 -2.3928 7 6 2.6234 -0.7000 -3.5371 8 6 3.0027 -2.0497 -3.6131 9 6 3.3896 -2.3011 -4.8844 10 7 3.2708 -1.1550 -5.5874 11 6 3.5910 -0.9787 -7.0061 12 6 2.3908 -0.4202 -7.7262 13 1 1.4806 -0.2166 -7.1816 14 6 2.4549 -0.1682 -9.0803 15 7 3.5634 -0.4157 -9.7434 16 14 0.9674 0.5246 -9.9728 17 1 1.0208 2.0084 -9.9462 18 1 0.9719 0.0543 -11.3814 19 1 -0.2732 0.0618 -9.3005 20 7 2.7887 -0.1637 -4.7232 21 6 2.0323 -0.7103 1.2304 22 6 2.9508 -0.0922 2.0582 23 6 3.4118 -0.7424 3.1873 24 6 2.9536 -2.0138 3.4888 25 9 3.4039 -2.6506 4.5919 26 6 2.0379 -2.6342 2.6560 27 6 1.5741 -1.9797 1.5306 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9703 1.4236 -0.0004 32 1 1.9215 0.9009 -2.4373 33 1 2.9860 -2.7616 -2.8011 34 1 3.7368 -3.2491 -5.2677 35 1 4.4286 -0.2884 -7.1064 36 1 3.8598 -1.9415 -7.4404 37 1 3.6086 -0.2380 -10.6959 38 1 3.3084 0.8993 1.8226 39 1 4.1297 -0.2595 3.8336 40 1 1.6832 -3.6275 2.8879 41 1 0.8565 -2.4616 0.8831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933102076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:02 Heat of formation + Delta-G solvation = -16.074218 kcal Electronic energy + Delta-G solvation = -27515.642897 eV Core-core repulsion = 23312.343306 eV Total energy + Delta-G solvation = -4203.299591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -49.18186 -41.19408 -40.28109 -38.75870 -37.07330 -34.86722 -33.36659 -32.65181 -31.34014 -31.00906 -29.49493 -29.30222 -26.84823 -25.04240 -23.42367 -23.24663 -22.43954 -21.09246 -20.22229 -19.73057 -18.57637 -17.88196 -17.19925 -16.69291 -16.61536 -16.29386 -15.86784 -15.59475 -15.45793 -15.04837 -14.72494 -14.36667 -14.13661 -14.00651 -13.71513 -13.50176 -13.20709 -12.98062 -12.73604 -12.68048 -12.44258 -12.38408 -12.29162 -12.07887 -11.83169 -11.34967 -11.15793 -11.06630 -10.90264 -10.49190 -10.28945 -10.03691 -9.59869 -9.54034 -9.38026 -8.93213 -8.66525 -8.20534 -7.55045 -6.27597 -4.32801 0.72947 0.92723 2.09487 2.58964 2.84129 3.21790 3.24897 3.27686 3.32653 3.58257 3.64839 3.75883 3.93025 4.10998 4.28682 4.35785 4.48844 4.55564 4.68504 4.93358 5.07695 5.08297 5.29816 5.34264 5.47694 5.54143 5.60721 5.71987 5.74675 5.79032 5.90446 6.08776 6.17686 6.40360 6.48808 6.52908 6.80306 6.94801 7.01258 7.31797 7.48627 7.67056 7.84233 7.98369 8.08585 8.56733 8.76188 9.33004 10.81190 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.002279 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.787119 B =12281.589488 C =12758.834133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.172 3.828 3 O -0.541 6.541 4 C 0.495 3.505 5 O -0.503 6.503 6 N -0.619 5.619 7 C 0.253 3.747 8 C -0.288 4.288 9 C 0.052 3.948 10 N -0.317 5.317 11 C 0.258 3.742 12 C -0.529 4.529 13 H 0.069 0.931 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.909 3.091 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.272 1.272 20 N -0.301 5.301 21 C -0.117 4.117 22 C -0.077 4.077 23 C -0.156 4.156 24 C 0.102 3.898 25 F -0.141 7.141 26 C -0.155 4.155 27 C -0.048 4.048 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.385 0.615 32 H 0.416 0.584 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -0.571 24.597 24.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.127 3.873 3 O -0.348 6.348 4 C 0.279 3.721 5 O -0.376 6.376 6 N -0.267 5.267 7 C 0.000 4.000 8 C -0.319 4.319 9 C -0.098 4.098 10 N -0.099 5.099 11 C 0.140 3.860 12 C -0.568 4.568 13 H 0.087 0.913 14 C -0.141 4.141 15 N -0.533 5.533 16 Si 0.736 3.264 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.132 5.132 21 C -0.118 4.118 22 C -0.095 4.095 23 C -0.175 4.175 24 C 0.083 3.917 25 F -0.119 7.119 26 C -0.174 4.174 27 C -0.066 4.066 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.234 0.766 32 H 0.253 0.747 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.129 -0.228 23.666 23.873 hybrid contribution 0.034 -0.170 -0.077 0.189 sum -3.095 -0.398 23.589 23.795 Atomic orbital electron populations 1.21837 0.89154 1.03897 1.04616 1.20086 0.96857 0.81565 0.88759 1.86622 1.27749 1.23830 1.96603 1.21144 0.78756 0.87892 0.84348 1.90677 1.47203 1.15488 1.84270 1.42409 1.63530 1.14331 1.06459 1.19124 1.01577 0.92130 0.87167 1.21506 1.16474 0.95855 0.98046 1.22576 1.02193 0.92848 0.92220 1.49121 1.45645 1.04760 1.10370 1.19767 0.97919 0.99251 0.69023 1.21245 0.98451 1.43810 0.93247 0.91304 1.24951 0.96790 0.95203 0.97146 1.69919 1.26292 1.47770 1.09322 0.86315 0.82266 0.79336 0.78517 1.20298 1.20966 1.19720 1.77346 1.23121 1.14493 0.98212 1.19990 0.99295 0.95858 0.96675 1.20766 0.95387 0.99927 0.93428 1.21061 1.02775 0.94151 0.99495 1.17789 0.96990 0.91952 0.84975 1.91504 1.87842 1.81729 1.50850 1.21149 0.99015 1.01438 0.95750 1.20839 0.98044 0.92956 0.94736 0.89992 0.90438 0.89941 0.76581 0.74741 0.82343 0.81443 0.93665 0.92485 0.92292 0.84562 0.84541 0.84457 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.55 37.16 0.32 -0.80 16 2 C 0.17 1.61 1.15 -92.93 -0.11 1.50 16 3 O -0.54 -4.33 11.51 -35.23 -0.41 -4.73 16 4 C 0.50 6.45 6.65 -10.99 -0.07 6.37 16 5 O -0.50 -7.86 12.33 5.54 0.07 -7.80 16 6 N -0.62 -9.04 5.36 -11.13 -0.06 -9.10 16 7 C 0.25 4.87 8.11 -154.39 -1.25 3.62 16 8 C -0.29 -5.48 9.61 -39.83 -0.38 -5.87 16 9 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 10 N -0.32 -7.22 3.67 -62.56 -0.23 -7.45 16 11 C 0.26 6.45 6.26 -5.19 -0.03 6.42 16 12 C -0.53 -14.53 9.24 -34.44 -0.32 -14.85 16 13 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 14 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -25.06 13.29 55.43 0.74 -24.32 16 16 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 N -0.30 -6.75 12.42 31.44 0.39 -6.35 16 21 C -0.12 -1.09 4.56 -104.62 -0.48 -1.57 16 22 C -0.08 -0.62 9.24 -39.59 -0.37 -0.99 16 23 C -0.16 -1.31 10.03 -39.51 -0.40 -1.70 16 24 C 0.10 0.98 7.30 -39.42 -0.29 0.69 16 25 F -0.14 -1.44 17.27 2.25 0.04 -1.40 16 26 C -0.15 -1.42 10.03 -39.51 -0.40 -1.81 16 27 C -0.05 -0.45 8.00 -39.59 -0.32 -0.77 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.62 7.00 -51.93 -0.36 0.26 16 31 H 0.38 2.10 7.75 45.56 0.35 2.46 16 32 H 0.42 5.24 8.27 -40.82 -0.34 4.90 16 33 H 0.16 2.91 5.92 -52.49 -0.31 2.60 16 34 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.14 0.78 6.43 -52.49 -0.34 0.44 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 1.22 6.97 -52.49 -0.37 0.86 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -32.47 357.44 -7.34 -39.81 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -3.86 Total: 7.20 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -4.38 Total: -7.35 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.84 Total: -47.23 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.34 Total: -12.53 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.47 -7.34 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933102076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.736 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds