Wall clock time and date at job start Tue Mar 31 2020 17:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.46962 * 2 1 4 4 C 1.50699 * 109.47255 * 240.00223 * 2 1 3 5 5 O 1.21296 * 119.99814 * 264.72235 * 4 2 1 6 6 N 1.34770 * 120.00311 * 84.71745 * 4 2 1 7 7 C 1.40162 * 120.00515 * 179.97438 * 6 4 2 8 8 C 1.40409 * 125.96739 * 359.72370 * 7 6 4 9 9 C 1.35244 * 107.86551 * 179.82744 * 8 7 6 10 10 N 1.34969 * 107.85574 * 0.42537 * 9 8 7 11 11 C 1.46505 * 125.96890 * 179.69184 * 10 9 8 12 12 C 1.50697 * 109.46828 * 125.01742 * 11 10 9 13 13 H 1.08008 * 120.00359 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00262 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99393 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00124 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47429 * 90.00223 * 16 14 12 18 18 H 1.48501 * 109.46792 * 210.00153 * 16 14 12 19 19 H 1.48497 * 109.47238 * 329.99557 * 16 14 12 20 20 N 1.31209 * 125.97674 * 180.02562 * 7 6 4 21 21 C 1.50693 * 109.46979 * 119.99784 * 2 1 3 22 22 C 1.38244 * 119.97483 * 232.43410 * 21 2 1 23 23 C 1.38203 * 120.02576 * 179.97438 * 22 21 2 24 24 C 1.38460 * 119.97232 * 0.02562 * 23 22 21 25 25 F 1.35101 * 120.02417 * 179.97438 * 24 23 22 26 26 C 1.38459 * 119.95116 * 0.24710 * 24 23 22 27 27 C 1.38200 * 119.97251 * 359.47865 * 26 24 23 28 28 H 1.08998 * 109.47290 * 299.99786 * 1 2 3 29 29 H 1.09006 * 109.47390 * 59.99875 * 1 2 3 30 30 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 31 31 H 0.96703 * 113.99806 * 180.02562 * 3 2 1 32 32 H 0.97009 * 120.00030 * 0.02562 * 6 4 2 33 33 H 1.08000 * 126.07030 * 359.97438 * 8 7 6 34 34 H 1.07997 * 126.06731 * 180.12958 * 9 8 7 35 35 H 1.08996 * 109.46960 * 245.01588 * 11 10 9 36 36 H 1.08994 * 109.47457 * 5.02005 * 11 10 9 37 37 H 0.97003 * 119.99616 * 180.02562 * 15 14 12 38 38 H 1.07997 * 119.98919 * 359.97438 * 22 21 2 39 39 H 1.08000 * 120.01548 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.01318 * 179.72726 * 26 24 23 41 41 H 1.07997 * 119.99082 * 180.27194 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.3256 -1.8860 -1.1748 6 7 2.1557 -0.0394 -2.3928 7 6 2.6234 -0.7000 -3.5371 8 6 3.0027 -2.0497 -3.6131 9 6 3.3896 -2.3011 -4.8844 10 7 3.2708 -1.1550 -5.5874 11 6 3.5910 -0.9787 -7.0061 12 6 2.3908 -0.4202 -7.7262 13 1 1.4806 -0.2166 -7.1816 14 6 2.4549 -0.1682 -9.0803 15 7 3.5634 -0.4157 -9.7434 16 14 0.9674 0.5246 -9.9728 17 1 1.0208 2.0084 -9.9462 18 1 0.9719 0.0543 -11.3814 19 1 -0.2732 0.0618 -9.3005 20 7 2.7887 -0.1637 -4.7232 21 6 2.0323 -0.7103 1.2304 22 6 2.9508 -0.0922 2.0582 23 6 3.4118 -0.7424 3.1873 24 6 2.9536 -2.0138 3.4888 25 9 3.4039 -2.6506 4.5919 26 6 2.0379 -2.6342 2.6560 27 6 1.5741 -1.9797 1.5306 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 2.9703 1.4236 -0.0004 32 1 1.9215 0.9009 -2.4373 33 1 2.9860 -2.7616 -2.8011 34 1 3.7368 -3.2491 -5.2677 35 1 4.4286 -0.2884 -7.1064 36 1 3.8598 -1.9415 -7.4404 37 1 3.6086 -0.2380 -10.6959 38 1 3.3084 0.8993 1.8226 39 1 4.1297 -0.2595 3.8336 40 1 1.6832 -3.6275 2.8879 41 1 0.8565 -2.4616 0.8831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933102076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:00 Heat of formation + Delta-G solvation = -37.121807 kcal Electronic energy + Delta-G solvation = -27516.555589 eV Core-core repulsion = 23312.343306 eV Total energy + Delta-G solvation = -4204.212283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -49.92305 -42.39021 -41.50739 -39.69140 -37.83805 -36.27308 -35.24533 -33.37173 -32.74306 -31.99292 -30.98262 -30.11130 -28.64784 -26.08513 -24.87318 -23.97427 -23.61345 -22.36250 -21.54229 -20.88890 -19.41890 -18.76664 -18.68306 -18.28319 -17.65031 -17.31244 -16.95249 -16.62634 -16.56589 -16.39399 -15.92990 -15.62963 -15.44743 -14.79999 -14.66390 -14.55067 -14.24871 -14.13362 -13.95409 -13.83559 -13.65027 -13.43007 -13.33222 -13.18941 -12.93796 -12.80980 -12.72172 -12.30276 -12.06436 -12.00109 -11.87448 -11.59732 -11.39219 -10.73171 -10.67250 -10.05679 -9.77779 -9.65084 -9.15061 -8.33735 -6.47673 0.01833 0.27614 0.85205 1.29480 1.37954 1.38544 1.40963 1.50911 2.17846 2.22339 2.36853 2.61918 2.95254 2.98331 3.23695 3.39127 3.43583 3.72399 3.93516 3.97190 4.01474 4.26249 4.30540 4.44533 4.67053 4.72222 4.77127 4.87405 4.90943 4.92454 4.95569 5.01602 5.08800 5.12785 5.14939 5.23987 5.42456 5.56015 5.78768 5.86275 5.90507 6.13921 6.26562 6.45439 6.64010 6.92906 7.06648 7.22343 8.73988 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025758 B = 0.002279 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.787119 B =12281.589488 C =12758.834133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.189 3.811 3 O -0.538 6.538 4 C 0.497 3.503 5 O -0.527 6.527 6 N -0.615 5.615 7 C 0.263 3.737 8 C -0.292 4.292 9 C 0.055 3.945 10 N -0.343 5.343 11 C 0.272 3.728 12 C -0.547 4.547 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.920 5.920 16 Si 0.972 3.028 17 H -0.272 1.272 18 H -0.273 1.273 19 H -0.272 1.272 20 N -0.344 5.344 21 C -0.127 4.127 22 C -0.076 4.076 23 C -0.157 4.157 24 C 0.086 3.914 25 F -0.148 7.148 26 C -0.162 4.162 27 C -0.058 4.058 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.397 0.603 32 H 0.426 0.574 33 H 0.169 0.831 34 H 0.200 0.800 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.273 0.727 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 -0.020 25.745 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.144 3.856 3 O -0.347 6.347 4 C 0.283 3.717 5 O -0.401 6.401 6 N -0.265 5.265 7 C 0.009 3.991 8 C -0.323 4.323 9 C -0.094 4.094 10 N -0.125 5.125 11 C 0.154 3.846 12 C -0.585 4.585 13 H 0.071 0.929 14 C -0.182 4.182 15 N -0.559 5.559 16 Si 0.796 3.204 17 H -0.198 1.198 18 H -0.197 1.197 19 H -0.197 1.197 20 N -0.174 5.174 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.175 4.175 24 C 0.066 3.934 25 F -0.127 7.127 26 C -0.180 4.180 27 C -0.076 4.076 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.248 0.752 32 H 0.264 0.736 33 H 0.186 0.814 34 H 0.217 0.783 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.180 0.820 39 H 0.174 0.826 40 H 0.166 0.834 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.857 0.332 24.849 25.149 hybrid contribution 0.293 -0.373 -0.281 0.551 sum -3.564 -0.041 24.568 24.825 Atomic orbital electron populations 1.21914 0.88118 1.04438 1.05325 1.19903 0.97432 0.81672 0.86571 1.86631 1.29063 1.22644 1.96346 1.21983 0.77412 0.87724 0.84596 1.90656 1.47974 1.16816 1.84644 1.42581 1.63460 1.14848 1.05573 1.19477 0.99637 0.92460 0.87536 1.21707 1.16445 0.96021 0.98118 1.23182 1.00929 0.93096 0.92148 1.48859 1.47798 1.06002 1.09880 1.19341 0.96328 0.98394 0.70582 1.21390 0.98659 1.44586 0.93877 0.92938 1.25743 0.99518 0.95242 0.97732 1.69995 1.27868 1.48239 1.09803 0.85347 0.78738 0.78706 0.77634 1.19773 1.19738 1.19703 1.77264 1.25280 1.15487 0.99418 1.20079 0.99931 0.95982 0.96837 1.21065 0.94548 1.00888 0.92849 1.21335 1.02759 0.93684 0.99765 1.18042 0.97580 0.92675 0.85057 1.91483 1.87985 1.81969 1.51227 1.21309 0.99005 1.02047 0.95674 1.20940 0.98386 0.93296 0.94950 0.88432 0.90571 0.89595 0.75154 0.73606 0.81382 0.78305 0.96035 0.92376 0.91834 0.82031 0.82624 0.83407 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.55 71.98 0.62 -1.38 16 2 C 0.19 3.15 1.15 -12.29 -0.01 3.13 16 3 O -0.54 -7.15 11.51 -148.98 -1.72 -8.86 16 4 C 0.50 12.21 6.65 87.66 0.58 12.79 16 5 O -0.53 -15.81 12.33 -3.08 -0.04 -15.85 16 6 N -0.61 -17.29 5.36 -307.52 -1.65 -18.94 16 7 C 0.26 10.04 8.11 133.33 1.08 11.13 16 8 C -0.29 -10.92 9.61 22.11 0.21 -10.70 16 9 C 0.06 2.11 11.44 83.52 0.96 3.07 16 10 N -0.34 -15.86 3.67 -351.85 -1.29 -17.15 16 11 C 0.27 13.97 6.26 85.63 0.54 14.51 16 12 C -0.55 -30.57 9.24 25.60 0.24 -30.34 16 13 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 14 C 0.02 0.99 5.46 84.66 0.46 1.45 16 15 N -0.92 -51.78 13.29 21.45 0.28 -51.49 16 16 Si 0.97 43.22 29.54 68.60 2.03 45.25 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 N -0.34 -15.60 12.42 -54.45 -0.68 -16.27 16 21 C -0.13 -2.12 4.56 -19.86 -0.09 -2.21 16 22 C -0.08 -1.03 9.24 22.26 0.21 -0.83 16 23 C -0.16 -2.30 10.03 22.31 0.22 -2.08 16 24 C 0.09 1.54 7.30 22.38 0.16 1.70 16 25 F -0.15 -2.91 17.27 44.97 0.78 -2.13 16 26 C -0.16 -2.79 10.03 22.31 0.22 -2.57 16 27 C -0.06 -1.02 8.00 22.26 0.18 -0.84 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.09 1.15 7.00 -2.38 -0.02 1.14 16 31 H 0.40 3.17 7.75 -74.06 -0.57 2.59 16 32 H 0.43 10.20 8.27 -92.70 -0.77 9.44 16 33 H 0.17 5.98 5.92 -2.91 -0.02 5.96 16 34 H 0.20 6.04 8.06 -2.91 -0.02 6.02 16 35 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 2.92 8.07 -2.39 -0.02 2.90 16 37 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.16 1.28 6.43 -2.91 -0.02 1.26 16 39 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 41 H 0.14 2.33 6.97 -2.91 -0.02 2.31 16 Total: -1.00 -69.73 357.44 3.06 -66.67 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.23 Total: 21.94 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.57 Total: -3.17 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -3.33 Total: -103.85 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -1.75 Total: -24.71 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.78 Total: -2.13 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.73 3.06 -66.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933102076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.553 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.25 seconds