Wall clock time and date at job start Tue Mar 31 2020 18:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08990 * 109.49880 * 2 1 4 4 C 1.53186 * 109.49440 * 120.10092 * 2 1 3 5 5 N 1.46927 * 108.77396 * 174.58718 * 4 2 1 6 6 C 1.36945 * 120.63360 * 126.40980 * 5 4 2 7 7 H 1.07995 * 119.99788 * 207.67560 * 6 5 4 8 8 C 1.38809 * 119.99502 * 27.67313 * 6 5 4 9 9 N 1.31623 * 120.00347 * 17.36296 * 8 6 5 10 10 Si 1.86805 * 119.99818 * 197.35545 * 8 6 5 11 11 H 1.48497 * 109.46781 * 90.00297 * 10 8 6 12 12 H 1.48497 * 109.47280 * 210.00425 * 10 8 6 13 13 H 1.48503 * 109.46885 * 330.00578 * 10 8 6 14 14 C 1.46924 * 118.73719 * 306.38881 * 5 4 2 15 15 C 1.53161 * 108.76909 * 53.61073 * 14 5 4 16 16 C 1.53038 * 109.32463 * 305.35165 * 15 14 5 17 17 H 1.09001 * 109.45887 * 181.38483 * 16 15 14 18 18 N 1.46498 * 109.46609 * 301.36095 * 16 15 14 19 19 C 1.34780 * 119.99819 * 275.03197 * 18 16 15 20 20 O 1.21723 * 119.99898 * 359.97438 * 19 18 16 21 21 C 1.46487 * 119.99948 * 179.97438 * 19 18 16 22 22 C 1.36111 * 125.71329 * 179.97438 * 21 19 18 23 23 C 1.42226 * 107.62958 * 179.97438 * 22 21 19 24 24 C 1.45591 * 140.78361 * 180.02562 * 23 22 21 25 25 C 1.31810 * 114.63893 * 180.02562 * 24 23 22 26 26 S 1.75351 * 111.23983 * 359.96588 * 25 24 23 27 27 C 1.38175 * 106.99421 * 0.02562 * 23 22 21 28 28 N 1.37466 * 108.16732 * 359.97438 * 27 23 22 29 29 H 0.97000 * 125.67883 * 180.02562 * 28 27 23 30 30 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46944 * 300.06061 * 1 2 3 32 32 H 1.08998 * 109.46875 * 60.06798 * 1 2 3 33 33 H 1.09003 * 109.58947 * 294.37261 * 4 2 1 34 34 H 1.09000 * 109.59251 * 54.65767 * 4 2 1 35 35 H 0.97002 * 120.00098 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58622 * 173.39603 * 14 5 4 37 37 H 1.08997 * 109.58573 * 293.67658 * 14 5 4 38 38 H 1.09004 * 109.47867 * 185.41003 * 15 14 5 39 39 H 1.08992 * 109.50458 * 65.31803 * 15 14 5 40 40 H 0.97002 * 120.00066 * 95.02477 * 18 16 15 41 41 H 1.08003 * 126.18806 * 0.22828 * 22 21 19 42 42 H 1.08002 * 122.68204 * 359.94152 * 24 23 22 43 43 H 1.07999 * 124.38096 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2936 -0.3800 2.1944 7 1 5.2989 -0.0406 1.9931 8 6 3.8012 -0.3607 3.4920 9 7 2.7376 -1.0709 3.8030 10 14 4.6481 0.6733 4.7971 11 1 4.0517 2.0331 4.8152 12 1 4.4690 0.0364 6.1265 13 1 6.0970 0.7723 4.4868 14 6 4.1053 -1.4267 -0.0312 15 6 3.5709 -0.6947 -1.2659 16 6 2.0409 -0.7228 -1.2486 17 1 1.6584 -0.2238 -2.1390 18 7 1.5783 -2.1127 -1.2314 19 6 1.4497 -2.7945 -2.3870 20 8 1.7175 -2.2551 -3.4448 21 6 0.9878 -4.1845 -2.3698 22 6 0.8162 -4.9782 -3.4621 23 6 0.3588 -6.2454 -3.0062 24 6 -0.0312 -7.5532 -3.5134 25 6 -0.3950 -8.4162 -2.5860 26 16 -0.2946 -7.7081 -0.9849 27 6 0.2681 -6.1706 -1.6295 28 7 0.6535 -4.9091 -1.2425 29 1 0.6855 -4.5824 -0.3297 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7638 -0.1587 2.1388 34 1 1.6033 -1.7211 1.2988 35 1 2.3937 -1.0577 4.7100 36 1 5.1896 -1.3246 0.0134 37 1 3.8396 -2.4824 -0.0861 38 1 3.9336 -1.1892 -2.1670 39 1 3.9159 0.3391 -1.2537 40 1 1.3647 -2.5425 -0.3884 41 1 0.9987 -4.6980 -4.4891 42 1 -0.0243 -7.7963 -4.5657 43 1 -0.7136 -9.4285 -2.7862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942546596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:55 Heat of formation + Delta-G solvation = 52.310748 kcal Electronic energy + Delta-G solvation = -26549.771658 eV Core-core repulsion = 22915.650638 eV Total energy + Delta-G solvation = -3634.121020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.39414 -39.61562 -37.60011 -35.46707 -34.32943 -32.33861 -31.90206 -30.54075 -29.85586 -28.39174 -26.02334 -25.36315 -23.55719 -22.94521 -21.92238 -21.05522 -20.18385 -19.54775 -19.32503 -18.61284 -17.00923 -16.71980 -15.53563 -15.27233 -15.14897 -14.92945 -14.66848 -14.46346 -14.13514 -13.86334 -13.66481 -13.53839 -13.28994 -13.09467 -12.91643 -12.63012 -12.12696 -11.99350 -11.77992 -11.53465 -11.30608 -11.12445 -11.02523 -10.95128 -10.78415 -10.44391 -10.24274 -10.04337 -10.01181 -9.81744 -9.60826 -9.51959 -8.80817 -8.56296 -8.39791 -7.78881 -6.78714 -5.89872 -3.31610 0.94649 1.20653 1.32569 1.84672 2.78927 3.01701 3.28623 3.31979 3.39540 3.40276 3.46539 4.41469 4.54345 4.78796 4.90957 5.18030 5.21980 5.29420 5.34994 5.46226 5.49591 5.57792 5.58941 5.76003 5.95046 5.98842 6.04427 6.07969 6.10290 6.24245 6.31524 6.36304 6.43225 6.47699 6.55406 6.60130 6.70509 6.82671 6.89669 7.04141 7.16844 7.46991 7.66619 7.71650 8.28014 8.34044 9.10496 9.73476 10.29400 11.18680 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.003188 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.428003 B = 8782.148594 C = 9806.108662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 H 0.081 0.919 4 C 0.179 3.821 5 N -0.592 5.592 6 C -0.252 4.252 7 H 0.067 0.933 8 C 0.003 3.997 9 N -0.904 5.904 10 Si 0.903 3.097 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.148 3.852 15 C -0.146 4.146 16 C 0.161 3.839 17 H 0.077 0.923 18 N -0.708 5.708 19 C 0.585 3.415 20 O -0.532 6.532 21 C 0.000 4.000 22 C -0.075 4.075 23 C -0.164 4.164 24 C -0.070 4.070 25 C -0.225 4.225 26 S 0.132 5.868 27 C -0.008 4.008 28 N -0.523 5.523 29 H 0.423 0.577 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.011 0.989 35 H 0.254 0.746 36 H 0.054 0.946 37 H 0.014 0.986 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.160 -10.451 -11.231 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 H 0.099 0.901 4 C 0.053 3.947 5 N -0.314 5.314 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.549 5.549 10 Si 0.733 3.267 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.021 3.979 15 C -0.186 4.186 16 C 0.057 3.943 17 H 0.095 0.905 18 N -0.359 5.359 19 C 0.371 3.629 20 O -0.410 6.410 21 C -0.114 4.114 22 C -0.103 4.103 23 C -0.177 4.177 24 C -0.100 4.100 25 C -0.359 4.359 26 S 0.385 5.615 27 C -0.237 4.237 28 N -0.126 5.126 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.271 -10.478 -10.263 16.839 hybrid contribution 0.589 0.876 0.301 1.098 sum -7.682 -9.602 -9.962 15.826 Atomic orbital electron populations 1.21724 0.95817 1.01075 1.01077 1.22155 0.94766 1.00945 0.97073 0.90077 1.20772 0.83253 0.96291 0.94412 1.44068 1.01559 1.69539 1.16235 1.19213 0.97770 1.35409 0.85764 0.91571 1.25014 0.98539 0.99016 0.96969 1.70006 1.25740 1.40240 1.18896 0.86276 0.79233 0.80154 0.81044 1.21402 1.21770 1.20417 1.20854 0.96683 0.93936 0.86408 1.22385 0.94860 1.01915 0.99464 1.20962 0.94481 0.80023 0.98841 0.90482 1.46087 1.66822 1.14791 1.08155 1.16946 0.77889 0.83479 0.84611 1.90835 1.51256 1.68422 1.30441 1.20201 1.11561 0.93715 0.85904 1.20692 1.01280 0.90050 0.98242 1.19376 1.11432 0.95822 0.91080 1.20312 0.99163 0.90280 1.00265 1.24862 1.11928 1.04131 0.94979 1.84001 1.71447 0.98789 1.07252 1.23557 1.10224 0.92252 0.97702 1.41517 1.53953 1.08160 1.08935 0.73798 0.93467 0.92486 0.93502 0.88972 0.97138 0.93620 0.92788 0.96766 0.92359 0.91171 0.76675 0.82655 0.83863 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.05 37.16 0.34 -1.72 16 2 C -0.13 -2.22 2.67 -90.50 -0.24 -2.47 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 4 C 0.18 3.82 4.29 -3.71 -0.02 3.80 16 5 N -0.59 -13.83 2.99 -172.34 -0.52 -14.35 16 6 C -0.25 -6.61 9.59 -15.06 -0.14 -6.76 16 7 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -24.77 11.19 55.49 0.62 -24.15 16 10 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 14 C 0.15 3.00 6.25 -3.73 -0.02 2.97 16 15 C -0.15 -2.58 5.77 -26.63 -0.15 -2.73 16 16 C 0.16 2.66 2.21 -67.89 -0.15 2.51 16 17 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 18 N -0.71 -10.93 3.60 -55.13 -0.20 -11.13 16 19 C 0.58 9.31 7.74 -12.94 -0.10 9.20 16 20 O -0.53 -9.83 16.51 5.17 0.09 -9.75 16 21 C 0.00 -0.01 6.97 -82.47 -0.57 -0.58 16 22 C -0.07 -1.01 10.58 -38.82 -0.41 -1.42 16 23 C -0.16 -2.07 6.80 -105.46 -0.72 -2.78 16 24 C -0.07 -0.69 10.42 -38.55 -0.40 -1.09 16 25 C -0.23 -1.96 11.03 28.84 0.32 -1.64 16 26 S 0.13 1.31 23.24 -107.50 -2.50 -1.19 16 27 C -0.01 -0.10 8.41 -15.05 -0.13 -0.23 16 28 N -0.52 -6.61 6.08 -7.94 -0.05 -6.65 16 29 H 0.42 4.74 8.14 -40.82 -0.33 4.40 16 30 H 0.05 0.67 7.53 -51.93 -0.39 0.28 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 34 H 0.01 0.23 6.64 -51.93 -0.35 -0.11 16 35 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 37 H 0.01 0.30 7.74 -51.93 -0.40 -0.11 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.40 5.97 5.80 -40.82 -0.24 5.73 16 41 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -29.83 359.72 -10.41 -40.24 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.76 Total: 8.47 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.49 Total: -2.92 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.14 Total: -56.27 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.50 Total: -1.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.83 -10.41 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.550 kcal (2) G-P(sol) polarization free energy of solvation -29.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds