Wall clock time and date at job start Tue Mar 31 2020 18:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08990 * 109.49880 * 2 1 4 4 C 1.53186 * 109.49440 * 120.10092 * 2 1 3 5 5 N 1.46927 * 108.77396 * 174.58718 * 4 2 1 6 6 C 1.36945 * 120.63360 * 126.40980 * 5 4 2 7 7 H 1.07995 * 119.99788 * 207.67560 * 6 5 4 8 8 C 1.38809 * 119.99502 * 27.67313 * 6 5 4 9 9 N 1.31623 * 120.00347 * 17.36296 * 8 6 5 10 10 Si 1.86805 * 119.99818 * 197.35545 * 8 6 5 11 11 H 1.48497 * 109.46781 * 90.00297 * 10 8 6 12 12 H 1.48497 * 109.47280 * 210.00425 * 10 8 6 13 13 H 1.48503 * 109.46885 * 330.00578 * 10 8 6 14 14 C 1.46924 * 118.73719 * 306.38881 * 5 4 2 15 15 C 1.53161 * 108.76909 * 53.61073 * 14 5 4 16 16 C 1.53038 * 109.32463 * 305.35165 * 15 14 5 17 17 H 1.09001 * 109.45887 * 181.38483 * 16 15 14 18 18 N 1.46498 * 109.46609 * 301.36095 * 16 15 14 19 19 C 1.34780 * 119.99819 * 275.03197 * 18 16 15 20 20 O 1.21723 * 119.99898 * 359.97438 * 19 18 16 21 21 C 1.46487 * 119.99948 * 179.97438 * 19 18 16 22 22 C 1.36111 * 125.71329 * 179.97438 * 21 19 18 23 23 C 1.42226 * 107.62958 * 179.97438 * 22 21 19 24 24 C 1.45591 * 140.78361 * 180.02562 * 23 22 21 25 25 C 1.31810 * 114.63893 * 180.02562 * 24 23 22 26 26 S 1.75351 * 111.23983 * 359.96588 * 25 24 23 27 27 C 1.38175 * 106.99421 * 0.02562 * 23 22 21 28 28 N 1.37466 * 108.16732 * 359.97438 * 27 23 22 29 29 H 0.97000 * 125.67883 * 180.02562 * 28 27 23 30 30 H 1.09000 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46944 * 300.06061 * 1 2 3 32 32 H 1.08998 * 109.46875 * 60.06798 * 1 2 3 33 33 H 1.09003 * 109.58947 * 294.37261 * 4 2 1 34 34 H 1.09000 * 109.59251 * 54.65767 * 4 2 1 35 35 H 0.97002 * 120.00098 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58622 * 173.39603 * 14 5 4 37 37 H 1.08997 * 109.58573 * 293.67658 * 14 5 4 38 38 H 1.09004 * 109.47867 * 185.41003 * 15 14 5 39 39 H 1.08992 * 109.50458 * 65.31803 * 15 14 5 40 40 H 0.97002 * 120.00066 * 95.02477 * 18 16 15 41 41 H 1.08003 * 126.18806 * 0.22828 * 22 21 19 42 42 H 1.08002 * 122.68204 * 359.94152 * 24 23 22 43 43 H 1.07999 * 124.38096 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5046 -0.8295 1.1693 6 6 4.2936 -0.3800 2.1944 7 1 5.2989 -0.0406 1.9931 8 6 3.8012 -0.3607 3.4920 9 7 2.7376 -1.0709 3.8030 10 14 4.6481 0.6733 4.7971 11 1 4.0517 2.0331 4.8152 12 1 4.4690 0.0364 6.1265 13 1 6.0970 0.7723 4.4868 14 6 4.1053 -1.4267 -0.0312 15 6 3.5709 -0.6947 -1.2659 16 6 2.0409 -0.7228 -1.2486 17 1 1.6584 -0.2238 -2.1390 18 7 1.5783 -2.1127 -1.2314 19 6 1.4497 -2.7945 -2.3870 20 8 1.7175 -2.2551 -3.4448 21 6 0.9878 -4.1845 -2.3698 22 6 0.8162 -4.9782 -3.4621 23 6 0.3588 -6.2454 -3.0062 24 6 -0.0312 -7.5532 -3.5134 25 6 -0.3950 -8.4162 -2.5860 26 16 -0.2946 -7.7081 -0.9849 27 6 0.2681 -6.1706 -1.6295 28 7 0.6535 -4.9091 -1.2425 29 1 0.6855 -4.5824 -0.3297 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5128 -0.8906 33 1 1.7638 -0.1587 2.1388 34 1 1.6033 -1.7211 1.2988 35 1 2.3937 -1.0577 4.7100 36 1 5.1896 -1.3246 0.0134 37 1 3.8396 -2.4824 -0.0861 38 1 3.9336 -1.1892 -2.1670 39 1 3.9159 0.3391 -1.2537 40 1 1.3647 -2.5425 -0.3884 41 1 0.9987 -4.6980 -4.4891 42 1 -0.0243 -7.7963 -4.5657 43 1 -0.7136 -9.4285 -2.7862 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942546596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:54 Heat of formation + Delta-G solvation = 35.524883 kcal Electronic energy + Delta-G solvation = -26550.499548 eV Core-core repulsion = 22915.650638 eV Total energy + Delta-G solvation = -3634.848910 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.41108 -40.93169 -39.05931 -36.30712 -35.98698 -33.79781 -33.57292 -31.55483 -31.46616 -29.43112 -27.56704 -27.05887 -24.75540 -23.95607 -23.39058 -22.59067 -21.24306 -20.66108 -20.36535 -19.95224 -18.75780 -17.89620 -16.92934 -16.73945 -16.46925 -16.00965 -15.76238 -15.67374 -15.47300 -15.27727 -15.19311 -14.80006 -14.60648 -14.52522 -14.24585 -13.73795 -13.62346 -13.11250 -12.97173 -12.82147 -12.79756 -12.62169 -12.58175 -12.51918 -12.19861 -11.83268 -11.75519 -11.73139 -11.53981 -11.27531 -11.15157 -10.57578 -10.55892 -10.12241 -9.28679 -8.70108 -8.65468 -7.90136 -5.33939 0.09664 0.21211 0.44337 1.09379 1.45871 1.48269 1.55652 1.83939 1.99079 2.11851 2.33744 2.49513 3.24861 3.56028 3.64417 3.79256 3.83056 3.99937 4.03451 4.14876 4.30863 4.43923 4.53871 4.60894 4.65105 4.69953 4.78023 4.79853 4.91813 4.97735 5.04855 5.08868 5.15561 5.20396 5.26966 5.30972 5.43792 5.45993 5.52305 5.63084 5.67283 5.72213 6.07902 6.37102 6.42181 7.01900 7.13517 7.82849 8.34018 9.15448 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.003188 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.428003 B = 8782.148594 C = 9806.108662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.116 4.116 3 H 0.075 0.925 4 C 0.188 3.812 5 N -0.607 5.607 6 C -0.264 4.264 7 H 0.062 0.938 8 C -0.043 4.043 9 N -0.928 5.928 10 Si 0.962 3.038 11 H -0.285 1.285 12 H -0.295 1.295 13 H -0.273 1.273 14 C 0.149 3.851 15 C -0.135 4.135 16 C 0.167 3.833 17 H 0.085 0.915 18 N -0.703 5.703 19 C 0.590 3.410 20 O -0.560 6.560 21 C -0.020 4.020 22 C -0.078 4.078 23 C -0.178 4.178 24 C -0.084 4.084 25 C -0.210 4.210 26 S 0.143 5.857 27 C -0.025 4.025 28 N -0.522 5.522 29 H 0.426 0.574 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.005 0.995 35 H 0.250 0.750 36 H 0.047 0.953 37 H 0.011 0.989 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.400 0.600 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.923 -11.564 -12.172 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.137 4.137 3 H 0.094 0.906 4 C 0.062 3.938 5 N -0.330 5.330 6 C -0.394 4.394 7 H 0.080 0.920 8 C -0.239 4.239 9 N -0.573 5.573 10 Si 0.791 3.209 11 H -0.212 1.212 12 H -0.222 1.222 13 H -0.198 1.198 14 C 0.024 3.976 15 C -0.175 4.175 16 C 0.063 3.937 17 H 0.103 0.897 18 N -0.354 5.354 19 C 0.377 3.623 20 O -0.440 6.440 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.191 4.191 24 C -0.114 4.114 25 C -0.343 4.343 26 S 0.396 5.604 27 C -0.254 4.254 28 N -0.126 5.126 29 H 0.266 0.734 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.023 0.977 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.236 0.764 41 H 0.179 0.821 42 H 0.186 0.814 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.036 -11.597 -11.212 18.490 hybrid contribution 0.821 1.089 0.576 1.481 sum -8.215 -10.508 -10.637 17.060 Atomic orbital electron populations 1.21667 0.93639 1.01748 1.01987 1.21956 0.96488 0.99983 0.95231 0.90619 1.20603 0.82367 0.95846 0.94947 1.44282 1.02266 1.69956 1.16473 1.19453 0.98019 1.35163 0.86745 0.92049 1.25654 0.99437 1.00141 0.98637 1.70130 1.26905 1.41401 1.18908 0.85354 0.78544 0.78565 0.78483 1.21227 1.22184 1.19825 1.20886 0.96351 0.93933 0.86462 1.22253 0.95618 1.01611 0.98042 1.20841 0.93673 0.80657 0.98541 0.89731 1.45992 1.66692 1.14367 1.08306 1.17087 0.77154 0.83983 0.84035 1.90811 1.52658 1.69251 1.31241 1.19955 1.13324 0.93186 0.86819 1.20901 1.00794 0.90568 0.98405 1.19752 1.11413 0.96583 0.91322 1.20557 0.99807 0.89174 1.01870 1.25314 1.10105 1.05255 0.93671 1.84033 1.70803 0.97240 1.08297 1.24034 1.10169 0.92791 0.98443 1.41454 1.54027 1.08342 1.08762 0.73406 0.92944 0.92536 0.91607 0.92337 0.97728 0.94063 0.93401 0.97078 0.91811 0.90955 0.76418 0.82092 0.81434 0.77960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.05 71.98 0.65 -3.11 16 2 C -0.12 -3.95 2.67 -10.71 -0.03 -3.98 16 3 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 4 C 0.19 8.14 4.29 86.36 0.37 8.51 16 5 N -0.61 -28.71 2.99 -699.17 -2.09 -30.80 16 6 C -0.26 -14.00 9.59 84.03 0.81 -13.19 16 7 H 0.06 3.25 7.89 -2.91 -0.02 3.23 16 8 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 9 N -0.93 -51.70 11.19 21.65 0.24 -51.45 16 10 Si 0.96 43.62 29.59 68.60 2.03 45.65 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 14 C 0.15 6.09 6.25 86.35 0.54 6.63 16 15 C -0.14 -4.69 5.77 30.66 0.18 -4.51 16 16 C 0.17 5.40 2.21 45.02 0.10 5.50 16 17 H 0.08 2.70 7.57 -2.39 -0.02 2.68 16 18 N -0.70 -21.43 3.60 -446.53 -1.61 -23.03 16 19 C 0.59 18.57 7.74 86.39 0.67 19.24 16 20 O -0.56 -20.44 16.51 -4.42 -0.07 -20.52 16 21 C -0.02 -0.55 6.97 39.81 0.28 -0.27 16 22 C -0.08 -2.07 10.58 22.77 0.24 -1.83 16 23 C -0.18 -4.24 6.80 -20.41 -0.14 -4.38 16 24 C -0.08 -1.44 10.42 23.39 0.24 -1.20 16 25 C -0.21 -2.99 11.03 67.05 0.74 -2.25 16 26 S 0.14 2.58 23.24 -56.49 -1.31 1.26 16 27 C -0.03 -0.61 8.41 83.79 0.70 0.10 16 28 N -0.52 -13.06 6.08 -179.04 -1.09 -14.15 16 29 H 0.43 9.59 8.14 -92.71 -0.75 8.83 16 30 H 0.05 1.43 7.53 -2.39 -0.02 1.41 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.95 6.04 -2.39 -0.01 2.93 16 34 H 0.00 0.21 6.64 -2.39 -0.02 0.20 16 35 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 36 H 0.05 1.97 7.93 -2.39 -0.02 1.96 16 37 H 0.01 0.47 7.74 -2.39 -0.02 0.45 16 38 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.40 11.97 5.80 -92.71 -0.54 11.43 16 41 H 0.16 3.90 8.06 -2.91 -0.02 3.87 16 42 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 43 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -63.82 359.72 1.63 -62.19 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.24 Total: 27.46 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.77 Total: 3.38 kcal Atomic # 7 Polarization: -114.89 SS G_CDS: -4.55 Total: -119.44 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.07 Total: -20.52 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.31 Total: 1.26 kcal Total: -63.82 1.63 -62.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.718 kcal (2) G-P(sol) polarization free energy of solvation -63.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds