Wall clock time and date at job start Tue Mar 31 2020 18:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.49869 * 2 1 4 4 C 1.53190 * 109.49798 * 239.93857 * 2 1 3 5 5 N 1.46929 * 108.77748 * 185.37626 * 4 2 1 6 6 C 1.36938 * 120.63157 * 233.62956 * 5 4 2 7 7 H 1.07997 * 120.00111 * 27.66425 * 6 5 4 8 8 C 1.38811 * 119.99833 * 207.66618 * 6 5 4 9 9 N 1.31622 * 119.99967 * 17.36569 * 8 6 5 10 10 Si 1.86800 * 120.00071 * 197.35911 * 8 6 5 11 11 H 1.48508 * 109.46781 * 90.00150 * 10 8 6 12 12 H 1.48500 * 109.47543 * 209.99997 * 10 8 6 13 13 H 1.48500 * 109.47074 * 330.00617 * 10 8 6 14 14 C 1.46921 * 118.73531 * 53.61219 * 5 4 2 15 15 C 1.53196 * 108.77580 * 306.38763 * 14 5 4 16 16 C 1.53034 * 109.31026 * 54.63626 * 15 14 5 17 17 H 1.09002 * 109.45803 * 178.61371 * 16 15 14 18 18 N 1.46504 * 109.45950 * 58.65777 * 16 15 14 19 19 C 1.34775 * 120.00128 * 85.00002 * 18 16 15 20 20 O 1.21722 * 120.00090 * 359.97438 * 19 18 16 21 21 C 1.46493 * 120.00322 * 179.97438 * 19 18 16 22 22 C 1.36111 * 125.71529 * 179.97438 * 21 19 18 23 23 C 1.42228 * 107.62716 * 179.97438 * 22 21 19 24 24 C 1.45588 * 140.78006 * 180.02562 * 23 22 21 25 25 C 1.31805 * 114.63748 * 179.97438 * 24 23 22 26 26 S 1.75358 * 111.23976 * 0.03152 * 25 24 23 27 27 C 1.38173 * 106.99346 * 0.02562 * 23 22 21 28 28 N 1.37460 * 108.17025 * 359.75270 * 27 23 22 29 29 H 0.96999 * 125.68618 * 180.28395 * 28 27 23 30 30 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46767 * 300.05801 * 1 2 3 32 32 H 1.08996 * 109.47134 * 60.05885 * 1 2 3 33 33 H 1.09011 * 109.58704 * 65.59109 * 4 2 1 34 34 H 1.09000 * 109.58639 * 305.16915 * 4 2 1 35 35 H 0.96998 * 119.99685 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.58691 * 186.60477 * 14 5 4 37 37 H 1.08999 * 109.59185 * 66.17938 * 14 5 4 38 38 H 1.09000 * 109.49565 * 174.58974 * 15 14 5 39 39 H 1.08996 * 109.49655 * 294.68349 * 15 14 5 40 40 H 0.96999 * 119.99632 * 264.99220 * 18 16 15 41 41 H 1.08001 * 126.18246 * 359.97438 * 22 21 19 42 42 H 1.07997 * 122.68242 * 359.97438 * 24 23 22 43 43 H 1.07997 * 124.38635 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8279 -1.1703 6 6 4.2931 -0.3768 -2.1950 7 1 3.9455 0.4231 -2.8319 8 6 5.5391 -0.9476 -2.4150 9 7 5.8290 -2.1184 -1.8881 10 14 6.8045 -0.0543 -3.4592 11 1 7.6340 0.8200 -2.5913 12 1 7.6754 -1.0468 -4.1387 13 1 6.1102 0.7743 -4.4773 14 6 4.1060 -1.4254 0.0297 15 6 3.5716 -0.6942 1.2653 16 6 2.0416 -0.7230 1.2480 17 1 1.6590 -0.2247 2.1388 18 7 1.5798 -2.1132 1.2305 19 6 1.4510 -2.7952 2.3858 20 8 1.7188 -2.2562 3.4438 21 6 0.9887 -4.1851 2.3683 22 6 0.8178 -4.9795 3.4603 23 6 0.3586 -6.2459 3.0041 24 6 -0.0327 -7.5534 3.5111 25 6 -0.3980 -8.4156 2.5835 26 16 -0.2977 -7.7069 0.9826 27 6 0.2673 -6.1704 1.6274 28 7 0.6482 -4.9074 1.2412 29 1 0.6748 -4.5785 0.3291 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7632 -0.1575 -2.1391 34 1 1.6056 -1.7214 -1.2983 35 1 6.6996 -2.5174 -2.0422 36 1 5.1902 -1.3228 -0.0151 37 1 3.8388 -2.4807 0.0857 38 1 3.9347 -1.1888 2.1661 39 1 3.9162 0.3398 1.2534 40 1 1.3666 -2.5428 0.3873 41 1 0.9983 -4.6987 4.4874 42 1 -0.0243 -7.7973 4.5631 43 1 -0.7177 -9.4276 2.7834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942546598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:06 Heat of formation + Delta-G solvation = 53.153577 kcal Electronic energy + Delta-G solvation = -26540.084037 eV Core-core repulsion = 22905.999565 eV Total energy + Delta-G solvation = -3634.084472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.38019 -39.61304 -37.60633 -35.45651 -34.35759 -32.63315 -31.22104 -30.53051 -30.26159 -28.42436 -25.97106 -25.35088 -23.52941 -22.91795 -21.89424 -21.17221 -20.18179 -19.56425 -19.32097 -18.61184 -16.98357 -16.66714 -15.54011 -15.23804 -15.13619 -14.90890 -14.66205 -14.42551 -14.18219 -13.97932 -13.71666 -13.49438 -13.37644 -12.99030 -12.88280 -12.58221 -12.20581 -11.98152 -11.76398 -11.56644 -11.44579 -11.15761 -10.95369 -10.90148 -10.76777 -10.41284 -10.29241 -10.13990 -9.94269 -9.82221 -9.59204 -9.50455 -8.76743 -8.53195 -8.38465 -7.77625 -6.77102 -5.86479 -3.29944 0.95152 1.21781 1.34735 1.85139 2.80743 3.02262 3.28730 3.33464 3.40773 3.41457 3.49925 4.42473 4.55458 4.79692 4.91571 5.09317 5.22506 5.28951 5.30338 5.40977 5.48404 5.53397 5.60237 5.80940 5.87759 5.96451 5.98691 6.06099 6.10081 6.18384 6.24212 6.32060 6.36052 6.54776 6.57921 6.60645 6.67720 6.79043 6.87768 7.04852 7.28652 7.59196 7.67306 7.72711 8.30133 8.36202 9.12555 9.75612 10.31076 11.21468 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.003226 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.314234 B = 8678.350709 C = 9584.616435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.084 0.916 4 C 0.153 3.847 5 N -0.591 5.591 6 C -0.257 4.257 7 H 0.066 0.934 8 C 0.005 3.995 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.161 3.839 17 H 0.077 0.923 18 N -0.707 5.707 19 C 0.586 3.414 20 O -0.531 6.531 21 C 0.001 3.999 22 C -0.074 4.074 23 C -0.164 4.164 24 C -0.069 4.069 25 C -0.225 4.225 26 S 0.130 5.870 27 C -0.008 4.008 28 N -0.522 5.522 29 H 0.422 0.578 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.008 0.992 35 H 0.254 0.746 36 H 0.087 0.913 37 H 0.016 0.984 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.395 0.605 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 -8.426 7.575 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.103 0.897 4 C 0.026 3.974 5 N -0.313 5.313 6 C -0.386 4.386 7 H 0.084 0.916 8 C -0.194 4.194 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.048 3.952 15 C -0.196 4.196 16 C 0.058 3.942 17 H 0.095 0.905 18 N -0.358 5.358 19 C 0.372 3.628 20 O -0.408 6.408 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.177 4.177 24 C -0.100 4.100 25 C -0.359 4.359 26 S 0.383 5.617 27 C -0.238 4.238 28 N -0.126 5.126 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.026 0.974 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.034 0.966 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.230 0.770 41 H 0.174 0.826 42 H 0.162 0.838 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.062 -8.527 6.748 17.776 hybrid contribution 0.995 0.744 -0.067 1.244 sum -13.067 -7.783 6.681 16.612 Atomic orbital electron populations 1.21766 0.95716 1.01185 1.01294 1.21971 0.94571 1.00925 0.96603 0.89722 1.20897 0.86188 0.95830 0.94512 1.44076 0.99063 1.71532 1.16647 1.19175 0.98280 1.12469 1.08671 0.91610 1.25037 0.99862 0.95329 0.99214 1.70031 1.21912 1.14562 1.47954 0.86287 0.81633 0.78930 0.79878 1.21373 1.21766 1.20429 1.20728 0.99439 0.92783 0.82215 1.22582 0.94005 1.02127 1.00837 1.20957 0.95263 0.79838 0.98191 0.90496 1.46024 1.66990 1.14765 1.08027 1.16921 0.77855 0.83450 0.84599 1.90838 1.51113 1.68393 1.30420 1.20200 1.11383 0.93770 0.85900 1.20698 1.01188 0.90069 0.98277 1.19373 1.11373 0.95832 0.91084 1.20315 0.99065 0.90289 1.00284 1.24850 1.11998 1.04123 0.94913 1.83954 1.71414 0.98920 1.07378 1.23541 1.10335 0.92158 0.97718 1.41478 1.54069 1.08107 1.08899 0.73965 0.93352 0.93092 0.92634 0.92349 0.97396 0.93572 0.89462 0.96592 0.92501 0.91544 0.76981 0.82634 0.83846 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.06 37.16 0.34 -1.46 16 2 C -0.12 -1.88 2.67 -90.50 -0.24 -2.12 16 3 H 0.08 1.38 8.14 -51.92 -0.42 0.96 16 4 C 0.15 2.86 5.50 -3.71 -0.02 2.84 16 5 N -0.59 -13.84 2.99 -172.32 -0.52 -14.35 16 6 C -0.26 -6.74 9.59 -15.06 -0.14 -6.89 16 7 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 8 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 9 N -0.90 -25.51 11.19 55.49 0.62 -24.89 16 10 Si 0.90 21.27 29.59 -169.99 -5.03 16.24 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 C 0.17 4.01 5.05 -3.71 -0.02 3.99 16 15 C -0.16 -3.01 5.77 -26.61 -0.15 -3.16 16 16 C 0.16 2.67 2.21 -67.89 -0.15 2.52 16 17 H 0.08 1.29 7.57 -51.93 -0.39 0.89 16 18 N -0.71 -10.93 3.59 -55.13 -0.20 -11.13 16 19 C 0.59 9.54 7.74 -12.94 -0.10 9.44 16 20 O -0.53 -10.09 16.51 5.17 0.09 -10.00 16 21 C 0.00 0.01 6.97 -82.47 -0.57 -0.56 16 22 C -0.07 -1.03 10.58 -38.81 -0.41 -1.44 16 23 C -0.16 -2.10 6.80 -105.46 -0.72 -2.82 16 24 C -0.07 -0.69 10.42 -38.55 -0.40 -1.09 16 25 C -0.23 -1.99 11.03 28.84 0.32 -1.67 16 26 S 0.13 1.30 23.24 -107.50 -2.50 -1.20 16 27 C -0.01 -0.11 8.41 -15.05 -0.13 -0.23 16 28 N -0.52 -6.61 6.08 -7.94 -0.05 -6.66 16 29 H 0.42 4.57 8.14 -40.82 -0.33 4.23 16 30 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.09 7.93 -51.92 -0.41 0.68 16 34 H 0.01 0.15 6.64 -51.93 -0.34 -0.19 16 35 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 37 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.39 5.70 5.80 -40.82 -0.24 5.46 16 41 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 42 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -30.77 359.72 -10.41 -41.18 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.76 Total: 8.00 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.49 Total: -2.61 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.14 Total: -57.03 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.50 Total: -1.20 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.77 -10.41 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.335 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds