Wall clock time and date at job start Tue Mar 31 2020 18:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.49869 * 2 1 4 4 C 1.53190 * 109.49798 * 239.93857 * 2 1 3 5 5 N 1.46929 * 108.77748 * 185.37626 * 4 2 1 6 6 C 1.36938 * 120.63157 * 233.62956 * 5 4 2 7 7 H 1.07997 * 120.00111 * 27.66425 * 6 5 4 8 8 C 1.38811 * 119.99833 * 207.66618 * 6 5 4 9 9 N 1.31622 * 119.99967 * 17.36569 * 8 6 5 10 10 Si 1.86800 * 120.00071 * 197.35911 * 8 6 5 11 11 H 1.48508 * 109.46781 * 90.00150 * 10 8 6 12 12 H 1.48500 * 109.47543 * 209.99997 * 10 8 6 13 13 H 1.48500 * 109.47074 * 330.00617 * 10 8 6 14 14 C 1.46921 * 118.73531 * 53.61219 * 5 4 2 15 15 C 1.53196 * 108.77580 * 306.38763 * 14 5 4 16 16 C 1.53034 * 109.31026 * 54.63626 * 15 14 5 17 17 H 1.09002 * 109.45803 * 178.61371 * 16 15 14 18 18 N 1.46504 * 109.45950 * 58.65777 * 16 15 14 19 19 C 1.34775 * 120.00128 * 85.00002 * 18 16 15 20 20 O 1.21722 * 120.00090 * 359.97438 * 19 18 16 21 21 C 1.46493 * 120.00322 * 179.97438 * 19 18 16 22 22 C 1.36111 * 125.71529 * 179.97438 * 21 19 18 23 23 C 1.42228 * 107.62716 * 179.97438 * 22 21 19 24 24 C 1.45588 * 140.78006 * 180.02562 * 23 22 21 25 25 C 1.31805 * 114.63748 * 179.97438 * 24 23 22 26 26 S 1.75358 * 111.23976 * 0.03152 * 25 24 23 27 27 C 1.38173 * 106.99346 * 0.02562 * 23 22 21 28 28 N 1.37460 * 108.17025 * 359.75270 * 27 23 22 29 29 H 0.96999 * 125.68618 * 180.28395 * 28 27 23 30 30 H 1.08999 * 109.46912 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46767 * 300.05801 * 1 2 3 32 32 H 1.08996 * 109.47134 * 60.05885 * 1 2 3 33 33 H 1.09011 * 109.58704 * 65.59109 * 4 2 1 34 34 H 1.09000 * 109.58639 * 305.16915 * 4 2 1 35 35 H 0.96998 * 119.99685 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.58691 * 186.60477 * 14 5 4 37 37 H 1.08999 * 109.59185 * 66.17938 * 14 5 4 38 38 H 1.09000 * 109.49565 * 174.58974 * 15 14 5 39 39 H 1.08996 * 109.49655 * 294.68349 * 15 14 5 40 40 H 0.96999 * 119.99632 * 264.99220 * 18 16 15 41 41 H 1.08001 * 126.18246 * 359.97438 * 22 21 19 42 42 H 1.07997 * 122.68242 * 359.97438 * 24 23 22 43 43 H 1.07997 * 124.38635 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 3.5047 -0.8279 -1.1703 6 6 4.2931 -0.3768 -2.1950 7 1 3.9455 0.4231 -2.8319 8 6 5.5391 -0.9476 -2.4150 9 7 5.8290 -2.1184 -1.8881 10 14 6.8045 -0.0543 -3.4592 11 1 7.6340 0.8200 -2.5913 12 1 7.6754 -1.0468 -4.1387 13 1 6.1102 0.7743 -4.4773 14 6 4.1060 -1.4254 0.0297 15 6 3.5716 -0.6942 1.2653 16 6 2.0416 -0.7230 1.2480 17 1 1.6590 -0.2247 2.1388 18 7 1.5798 -2.1132 1.2305 19 6 1.4510 -2.7952 2.3858 20 8 1.7188 -2.2562 3.4438 21 6 0.9887 -4.1851 2.3683 22 6 0.8178 -4.9795 3.4603 23 6 0.3586 -6.2459 3.0041 24 6 -0.0327 -7.5534 3.5111 25 6 -0.3980 -8.4156 2.5835 26 16 -0.2977 -7.7069 0.9826 27 6 0.2673 -6.1704 1.6274 28 7 0.6482 -4.9074 1.2412 29 1 0.6748 -4.5785 0.3291 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5129 -0.8905 33 1 1.7632 -0.1575 -2.1391 34 1 1.6056 -1.7214 -1.2983 35 1 6.6996 -2.5174 -2.0422 36 1 5.1902 -1.3228 -0.0151 37 1 3.8388 -2.4807 0.0857 38 1 3.9347 -1.1888 2.1661 39 1 3.9162 0.3398 1.2534 40 1 1.3666 -2.5428 0.3873 41 1 0.9983 -4.6987 4.4874 42 1 -0.0243 -7.7973 4.5631 43 1 -0.7177 -9.4276 2.7834 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942546598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:05 Heat of formation + Delta-G solvation = 35.112408 kcal Electronic energy + Delta-G solvation = -26540.866361 eV Core-core repulsion = 22905.999565 eV Total energy + Delta-G solvation = -3634.866796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.41641 -40.93968 -39.06813 -36.31691 -36.04599 -34.05660 -32.92733 -31.92132 -31.53622 -29.46282 -27.43633 -27.05770 -24.73828 -23.93667 -23.38186 -22.72963 -21.25958 -20.67197 -20.37081 -19.95552 -18.71345 -17.89493 -16.94860 -16.73565 -16.47585 -16.02532 -15.75603 -15.67598 -15.49864 -15.36107 -15.20137 -14.80829 -14.56796 -14.52310 -14.22751 -13.73154 -13.57709 -13.18969 -13.00554 -12.80300 -12.73657 -12.60875 -12.57659 -12.42579 -12.19897 -11.98405 -11.74848 -11.71923 -11.53743 -11.30480 -11.13339 -10.57074 -10.55685 -10.13996 -9.28746 -8.70932 -8.65046 -7.89652 -5.34681 0.08856 0.20846 0.43904 1.08582 1.45025 1.47661 1.55124 1.82904 1.98486 2.12002 2.33812 2.49135 3.25767 3.55576 3.64971 3.76441 3.82447 4.01930 4.03073 4.08664 4.36794 4.43560 4.54621 4.61534 4.64450 4.72673 4.76458 4.77430 4.93164 4.98004 5.04152 5.11085 5.15698 5.20407 5.27611 5.38348 5.43101 5.45049 5.51205 5.62250 5.66360 5.70210 6.08865 6.35813 6.41976 7.02180 7.11897 7.83229 8.33982 9.15959 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.003226 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.314234 B = 8678.350709 C = 9584.616435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.606 5.606 6 C -0.260 4.260 7 H 0.070 0.930 8 C -0.049 4.049 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.266 1.266 14 C 0.188 3.812 15 C -0.145 4.145 16 C 0.168 3.832 17 H 0.084 0.916 18 N -0.701 5.701 19 C 0.588 3.412 20 O -0.563 6.563 21 C -0.019 4.019 22 C -0.081 4.081 23 C -0.179 4.179 24 C -0.085 4.085 25 C -0.210 4.210 26 S 0.148 5.852 27 C -0.025 4.025 28 N -0.520 5.520 29 H 0.427 0.573 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.248 0.752 36 H 0.047 0.953 37 H -0.002 1.002 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.401 0.599 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 -9.061 7.435 20.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.100 0.900 4 C 0.024 3.976 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.087 0.913 8 C -0.244 4.244 9 N -0.579 5.579 10 Si 0.792 3.208 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.191 1.191 14 C 0.062 3.938 15 C -0.185 4.185 16 C 0.063 3.937 17 H 0.102 0.898 18 N -0.351 5.351 19 C 0.376 3.624 20 O -0.442 6.442 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.192 4.192 24 C -0.115 4.115 25 C -0.344 4.344 26 S 0.401 5.599 27 C -0.254 4.254 28 N -0.124 5.124 29 H 0.267 0.733 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.016 0.984 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.237 0.763 41 H 0.177 0.823 42 H 0.185 0.815 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -16.173 -9.150 6.583 19.714 hybrid contribution 1.576 0.835 -0.021 1.783 sum -14.598 -8.315 6.562 18.036 Atomic orbital electron populations 1.21701 0.92740 1.02085 1.02626 1.21817 0.96851 0.99921 0.94117 0.89987 1.21088 0.83438 0.96835 0.96246 1.44266 1.01034 1.71494 1.16140 1.19508 0.98776 1.12077 1.08668 0.91259 1.25740 1.01699 0.96022 1.00976 1.70180 1.21835 1.16045 1.49841 0.85331 0.79278 0.77654 0.78564 1.21612 1.22427 1.19090 1.20396 0.97205 0.92301 0.83896 1.22413 0.96315 1.01279 0.98466 1.20845 0.93020 0.80707 0.99096 0.89840 1.45916 1.66641 1.14367 1.08217 1.17121 0.77131 0.84032 0.84133 1.90811 1.52669 1.69309 1.31417 1.19933 1.13181 0.93210 0.86924 1.20902 1.00861 0.90746 0.98406 1.19745 1.11447 0.96551 0.91454 1.20551 0.99856 0.89217 1.01880 1.25316 1.10072 1.05237 0.93736 1.83962 1.70627 0.97121 1.08156 1.24037 1.10152 0.92764 0.98414 1.41394 1.54028 1.08224 1.08754 0.73295 0.92698 0.91923 0.91178 0.92084 0.96290 0.94312 0.93454 0.98416 0.93278 0.91586 0.76334 0.82313 0.81547 0.77927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 9.06 71.98 0.65 -2.35 16 2 C -0.11 -3.16 2.67 -10.72 -0.03 -3.19 16 3 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 4 C 0.15 5.44 5.50 86.36 0.48 5.91 16 5 N -0.61 -28.59 2.99 -699.08 -2.09 -30.68 16 6 C -0.26 -13.74 9.59 84.03 0.81 -12.93 16 7 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 8 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 9 N -0.93 -54.48 11.19 21.65 0.24 -54.24 16 10 Si 0.96 44.31 29.59 68.60 2.03 46.34 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 14 C 0.19 8.93 5.05 86.36 0.44 9.37 16 15 C -0.14 -5.69 5.77 30.67 0.18 -5.51 16 16 C 0.17 5.45 2.21 45.01 0.10 5.55 16 17 H 0.08 2.69 7.57 -2.39 -0.02 2.67 16 18 N -0.70 -21.44 3.59 -446.54 -1.60 -23.05 16 19 C 0.59 19.28 7.74 86.39 0.67 19.95 16 20 O -0.56 -21.64 16.51 -4.42 -0.07 -21.72 16 21 C -0.02 -0.56 6.97 39.81 0.28 -0.28 16 22 C -0.08 -2.24 10.58 22.77 0.24 -2.00 16 23 C -0.18 -4.41 6.80 -20.41 -0.14 -4.55 16 24 C -0.09 -1.51 10.42 23.40 0.24 -1.27 16 25 C -0.21 -3.05 11.03 67.05 0.74 -2.31 16 26 S 0.15 2.64 23.24 -56.49 -1.31 1.33 16 27 C -0.02 -0.59 8.41 83.80 0.70 0.11 16 28 N -0.52 -13.00 6.08 -179.04 -1.09 -14.09 16 29 H 0.43 9.13 8.14 -92.71 -0.75 8.37 16 30 H 0.05 1.17 7.54 -2.39 -0.02 1.15 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 2.19 7.93 -2.38 -0.02 2.17 16 34 H 0.02 0.67 6.64 -2.39 -0.02 0.65 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.05 2.63 6.04 -2.39 -0.01 2.61 16 37 H 0.00 -0.11 7.74 -2.39 -0.02 -0.13 16 38 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.40 11.34 5.80 -92.71 -0.54 10.81 16 41 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 42 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 43 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -67.56 359.72 1.63 -65.93 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.24 Total: 25.94 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.77 Total: 4.25 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -4.54 Total: -122.06 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.31 Total: 1.33 kcal Total: -67.56 1.63 -65.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942546598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.038 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds