Wall clock time and date at job start Tue Mar 31 2020 18:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.52369 * 2 1 4 4 C 1.53192 * 109.49822 * 239.92302 * 2 1 3 5 5 N 1.46920 * 108.77988 * 185.40868 * 4 2 1 6 6 C 1.36935 * 120.63639 * 233.63278 * 5 4 2 7 7 H 1.08003 * 120.00517 * 152.77756 * 6 5 4 8 8 C 1.38807 * 119.99914 * 332.77454 * 6 5 4 9 9 N 1.31616 * 120.00533 * 159.75793 * 8 6 5 10 10 Si 1.86802 * 119.99929 * 339.76288 * 8 6 5 11 11 H 1.48507 * 109.47241 * 94.89789 * 10 8 6 12 12 H 1.48500 * 109.47335 * 214.89864 * 10 8 6 13 13 H 1.48497 * 109.47273 * 334.89770 * 10 8 6 14 14 C 1.46937 * 118.73614 * 53.60838 * 5 4 2 15 15 C 1.53196 * 108.77244 * 306.39024 * 14 5 4 16 16 C 1.53037 * 109.50276 * 120.08460 * 2 1 3 17 17 H 1.09011 * 109.44572 * 301.33327 * 16 2 1 18 18 N 1.46500 * 109.46017 * 61.29393 * 16 2 1 19 19 C 1.34776 * 120.00125 * 205.06841 * 18 16 2 20 20 O 1.21740 * 119.99850 * 0.02562 * 19 18 16 21 21 C 1.46445 * 120.00144 * 179.97438 * 19 18 16 22 22 C 1.37475 * 125.80916 * 179.97438 * 21 19 18 23 23 C 1.40650 * 107.55759 * 180.02562 * 22 21 19 24 24 S 1.76020 * 142.39532 * 180.33096 * 23 22 21 25 25 C 1.75599 * 91.31206 * 179.97438 * 24 23 22 26 26 C 1.32774 * 110.47041 * 359.71957 * 25 24 23 27 27 C 1.38249 * 108.03563 * 0.02562 * 23 22 21 28 28 N 1.37924 * 125.80587 * 0.02562 * 21 19 18 29 29 H 0.96993 * 125.68453 * 359.94266 * 28 21 19 30 30 H 1.08997 * 109.47108 * 299.91001 * 1 2 3 31 31 H 1.08997 * 109.47572 * 59.91747 * 1 2 3 32 32 H 1.09001 * 109.46527 * 179.91666 * 1 2 3 33 33 H 1.09003 * 109.58884 * 65.62346 * 4 2 1 34 34 H 1.08998 * 109.58995 * 305.19919 * 4 2 1 35 35 H 0.96996 * 120.00304 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.58554 * 186.60896 * 14 5 4 37 37 H 1.08995 * 109.58714 * 66.17874 * 14 5 4 38 38 H 1.08996 * 109.49778 * 294.68518 * 15 14 5 39 39 H 1.08994 * 109.49465 * 174.58278 * 15 14 5 40 40 H 0.96993 * 120.00035 * 25.07342 * 18 16 2 41 41 H 1.08002 * 126.21497 * 0.04258 * 22 21 19 42 42 H 1.08000 * 124.76532 * 179.97438 * 25 24 23 43 43 H 1.08005 * 122.15888 * 180.23332 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5045 -0.8290 -1.1698 6 6 4.2935 -0.3783 -2.1942 7 1 5.3014 -0.0458 -1.9937 8 6 3.7980 -0.3487 -3.4905 9 7 4.3622 0.4252 -4.3933 10 14 2.3303 -1.4073 -3.9537 11 1 1.0853 -0.6064 -3.8355 12 1 2.4832 -1.8807 -5.3529 13 1 2.2553 -2.5763 -3.0410 14 6 4.1054 -1.4266 0.0306 15 6 3.5709 -0.6949 1.2659 16 6 2.0409 -0.7231 1.2482 17 1 1.6582 -0.2243 2.1388 18 7 1.5784 -2.1131 1.2307 19 6 1.4491 -2.7950 2.3860 20 8 1.7162 -2.2556 3.4442 21 6 0.9863 -4.1842 2.3685 22 6 0.8125 -4.9881 3.4701 23 6 0.3591 -6.2393 3.0150 24 16 -0.1291 -7.8344 3.5770 25 6 -0.4361 -8.3646 1.9313 26 6 -0.1829 -7.3840 1.0727 27 6 0.2620 -6.1841 1.6370 28 7 0.6516 -4.9091 1.2438 29 1 0.6826 -4.5834 0.3308 30 1 -0.3633 0.5124 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3632 -1.0277 -0.0015 33 1 1.7637 -0.1578 -2.1389 34 1 1.6053 -1.7215 -1.2982 35 1 4.0157 0.4461 -5.2990 36 1 5.1897 -1.3244 -0.0140 37 1 3.8376 -2.4817 0.0866 38 1 3.9160 0.3389 1.2539 39 1 3.9335 -1.1896 2.1669 40 1 1.3654 -2.5427 0.3876 41 1 0.9912 -4.7093 4.4981 42 1 -0.7859 -9.3487 1.6566 43 1 -0.3124 -7.5051 0.0073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943988812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:22 Heat of formation + Delta-G solvation = 58.556057 kcal Electronic energy + Delta-G solvation = -26728.303676 eV Core-core repulsion = 23094.453473 eV Total energy + Delta-G solvation = -3633.850203 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -41.54536 -39.87258 -37.90410 -35.49893 -34.52880 -32.60989 -32.02388 -31.12276 -30.44083 -28.38651 -26.32145 -25.40480 -23.83132 -23.00180 -22.28187 -21.05575 -20.68459 -20.03557 -19.05079 -18.84030 -17.03541 -16.69176 -15.87215 -15.66104 -15.41800 -15.20580 -14.72057 -14.39787 -14.29687 -14.17480 -13.83759 -13.69004 -13.45351 -13.36792 -13.09442 -12.82842 -12.32455 -12.09458 -12.05798 -11.81220 -11.62534 -11.46123 -11.30430 -11.08299 -10.81024 -10.62612 -10.35796 -10.20763 -10.06342 -9.95558 -9.80847 -9.57743 -8.98004 -8.72592 -8.29297 -7.89430 -7.09237 -6.04519 -3.41128 0.54714 1.31038 1.77330 1.83878 2.52830 2.63151 3.15274 3.18603 3.27927 3.31930 3.37581 4.40402 4.51283 4.65743 4.74307 4.80405 4.94059 5.11982 5.18977 5.21999 5.26763 5.35993 5.51106 5.57483 5.69394 5.75636 5.76021 5.79612 5.85922 5.92626 6.05674 6.15733 6.23154 6.28556 6.31364 6.39904 6.48508 6.54485 6.56946 6.62670 6.82536 7.04539 7.48220 7.85173 8.11327 8.23576 8.83102 9.61099 9.97716 11.11524 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.003431 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.892758 B = 8158.958976 C = 9116.767223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 H 0.092 0.908 4 C 0.133 3.867 5 N -0.604 5.604 6 C -0.260 4.260 7 H 0.087 0.913 8 C 0.023 3.977 9 N -0.906 5.906 10 Si 0.882 3.118 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.274 1.274 14 C 0.151 3.849 15 C -0.148 4.148 16 C 0.160 3.840 17 H 0.084 0.916 18 N -0.712 5.712 19 C 0.585 3.415 20 O -0.527 6.527 21 C 0.014 3.986 22 C -0.075 4.075 23 C -0.218 4.218 24 S 0.127 5.873 25 C -0.190 4.190 26 C -0.113 4.113 27 C 0.064 3.936 28 N -0.540 5.540 29 H 0.420 0.580 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.016 0.984 35 H 0.263 0.737 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.395 0.605 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 -13.748 12.909 22.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 H 0.110 0.890 4 C 0.007 3.993 5 N -0.328 5.328 6 C -0.388 4.388 7 H 0.105 0.895 8 C -0.176 4.176 9 N -0.549 5.549 10 Si 0.713 3.287 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.199 1.199 14 C 0.025 3.975 15 C -0.188 4.188 16 C 0.057 3.943 17 H 0.102 0.898 18 N -0.363 5.363 19 C 0.372 3.628 20 O -0.403 6.403 21 C -0.101 4.101 22 C -0.105 4.105 23 C -0.338 4.338 24 S 0.386 5.614 25 C -0.326 4.326 26 C -0.146 4.146 27 C -0.055 4.055 28 N -0.143 5.143 29 H 0.258 0.742 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.230 0.770 41 H 0.174 0.826 42 H 0.189 0.811 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.327 -13.870 14.709 23.174 hybrid contribution -0.807 -0.002 -2.869 2.981 sum -12.134 -13.872 11.839 21.905 Atomic orbital electron populations 1.21791 0.95505 1.01262 1.01714 1.21990 0.94919 1.01333 0.95830 0.88983 1.21344 0.85226 0.96433 0.96291 1.44366 1.00405 1.70145 1.17835 1.18939 0.98486 1.36295 0.85121 0.89538 1.25285 0.97905 0.98690 0.95681 1.69823 1.42929 1.37974 1.04160 0.86949 0.82797 0.82040 0.76902 1.21652 1.23092 1.19895 1.20892 0.97368 0.93806 0.85458 1.22395 0.94522 1.02391 0.99450 1.20983 0.94721 0.79907 0.98731 0.89795 1.46085 1.67243 1.14831 1.08109 1.16913 0.77914 0.83470 0.84553 1.90856 1.50801 1.68365 1.30284 1.20460 1.10224 0.93417 0.86015 1.20386 1.02673 0.89261 0.98230 1.22676 1.14785 1.00188 0.96151 1.83885 1.69028 1.02481 1.06009 1.25217 1.08299 1.03174 0.95900 1.18932 1.04570 0.90016 1.01124 1.18351 1.07006 0.87571 0.92522 1.42040 1.54461 1.09188 1.08587 0.74178 0.92715 0.92376 0.93386 0.90550 0.96611 0.92692 0.91737 0.96304 0.90637 0.91863 0.77012 0.82584 0.81056 0.84105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.05 37.16 0.34 -1.60 16 2 C -0.12 -1.91 2.67 -90.50 -0.24 -2.15 16 3 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.13 2.61 3.18 -3.71 -0.01 2.59 16 5 N -0.60 -13.35 2.77 -172.31 -0.48 -13.83 16 6 C -0.26 -6.96 10.04 -15.06 -0.15 -7.11 16 7 H 0.09 2.50 8.05 -52.48 -0.42 2.07 16 8 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 9 N -0.91 -27.00 13.97 55.49 0.78 -26.22 16 10 Si 0.88 21.14 24.35 -169.99 -4.14 17.00 16 11 H -0.29 -6.65 6.70 56.52 0.38 -6.27 16 12 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.27 -6.23 6.45 56.52 0.36 -5.87 16 14 C 0.15 2.84 6.26 -3.70 -0.02 2.82 16 15 C -0.15 -2.41 5.77 -26.61 -0.15 -2.56 16 16 C 0.16 2.43 2.21 -67.89 -0.15 2.28 16 17 H 0.08 1.28 7.57 -51.92 -0.39 0.88 16 18 N -0.71 -9.97 3.59 -55.14 -0.20 -10.17 16 19 C 0.59 8.59 7.74 -12.96 -0.10 8.49 16 20 O -0.53 -9.12 16.52 5.15 0.09 -9.04 16 21 C 0.01 0.18 7.01 -82.10 -0.58 -0.39 16 22 C -0.07 -0.96 10.60 -38.95 -0.41 -1.37 16 23 C -0.22 -2.61 7.26 -38.67 -0.28 -2.89 16 24 S 0.13 1.17 23.31 -107.50 -2.51 -1.33 16 25 C -0.19 -1.52 11.13 28.86 0.32 -1.19 16 26 C -0.11 -1.04 10.16 -40.85 -0.42 -1.45 16 27 C 0.06 0.73 7.67 -84.00 -0.64 0.09 16 28 N -0.54 -6.14 6.14 -7.34 -0.05 -6.18 16 29 H 0.42 4.01 8.14 -40.82 -0.33 3.67 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 33 H 0.08 1.69 4.49 -51.93 -0.23 1.45 16 34 H 0.02 0.30 5.48 -51.93 -0.28 0.02 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 37 H 0.02 0.35 7.74 -51.93 -0.40 -0.05 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.39 5.23 5.81 -40.82 -0.24 4.99 16 41 H 0.16 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -31.37 352.87 -9.47 -40.84 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.69 Total: 7.52 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.59 Total: -3.90 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.05 Total: -56.40 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.14 Total: 17.00 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.37 -9.47 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943988812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.392 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds