Wall clock time and date at job start Tue Mar 31 2020 18:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.52369 * 2 1 4 4 C 1.53192 * 109.49822 * 239.92302 * 2 1 3 5 5 N 1.46920 * 108.77988 * 185.40868 * 4 2 1 6 6 C 1.36935 * 120.63639 * 233.63278 * 5 4 2 7 7 H 1.08003 * 120.00517 * 152.77756 * 6 5 4 8 8 C 1.38807 * 119.99914 * 332.77454 * 6 5 4 9 9 N 1.31616 * 120.00533 * 159.75793 * 8 6 5 10 10 Si 1.86802 * 119.99929 * 339.76288 * 8 6 5 11 11 H 1.48507 * 109.47241 * 94.89789 * 10 8 6 12 12 H 1.48500 * 109.47335 * 214.89864 * 10 8 6 13 13 H 1.48497 * 109.47273 * 334.89770 * 10 8 6 14 14 C 1.46937 * 118.73614 * 53.60838 * 5 4 2 15 15 C 1.53196 * 108.77244 * 306.39024 * 14 5 4 16 16 C 1.53037 * 109.50276 * 120.08460 * 2 1 3 17 17 H 1.09011 * 109.44572 * 301.33327 * 16 2 1 18 18 N 1.46500 * 109.46017 * 61.29393 * 16 2 1 19 19 C 1.34776 * 120.00125 * 205.06841 * 18 16 2 20 20 O 1.21740 * 119.99850 * 0.02562 * 19 18 16 21 21 C 1.46445 * 120.00144 * 179.97438 * 19 18 16 22 22 C 1.37475 * 125.80916 * 179.97438 * 21 19 18 23 23 C 1.40650 * 107.55759 * 180.02562 * 22 21 19 24 24 S 1.76020 * 142.39532 * 180.33096 * 23 22 21 25 25 C 1.75599 * 91.31206 * 179.97438 * 24 23 22 26 26 C 1.32774 * 110.47041 * 359.71957 * 25 24 23 27 27 C 1.38249 * 108.03563 * 0.02562 * 23 22 21 28 28 N 1.37924 * 125.80587 * 0.02562 * 21 19 18 29 29 H 0.96993 * 125.68453 * 359.94266 * 28 21 19 30 30 H 1.08997 * 109.47108 * 299.91001 * 1 2 3 31 31 H 1.08997 * 109.47572 * 59.91747 * 1 2 3 32 32 H 1.09001 * 109.46527 * 179.91666 * 1 2 3 33 33 H 1.09003 * 109.58884 * 65.62346 * 4 2 1 34 34 H 1.08998 * 109.58995 * 305.19919 * 4 2 1 35 35 H 0.96996 * 120.00304 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.58554 * 186.60896 * 14 5 4 37 37 H 1.08995 * 109.58714 * 66.17874 * 14 5 4 38 38 H 1.08996 * 109.49778 * 294.68518 * 15 14 5 39 39 H 1.08994 * 109.49465 * 174.58278 * 15 14 5 40 40 H 0.96993 * 120.00035 * 25.07342 * 18 16 2 41 41 H 1.08002 * 126.21497 * 0.04258 * 22 21 19 42 42 H 1.08000 * 124.76532 * 179.97438 * 25 24 23 43 43 H 1.08005 * 122.15888 * 180.23332 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5045 -0.8290 -1.1698 6 6 4.2935 -0.3783 -2.1942 7 1 5.3014 -0.0458 -1.9937 8 6 3.7980 -0.3487 -3.4905 9 7 4.3622 0.4252 -4.3933 10 14 2.3303 -1.4073 -3.9537 11 1 1.0853 -0.6064 -3.8355 12 1 2.4832 -1.8807 -5.3529 13 1 2.2553 -2.5763 -3.0410 14 6 4.1054 -1.4266 0.0306 15 6 3.5709 -0.6949 1.2659 16 6 2.0409 -0.7231 1.2482 17 1 1.6582 -0.2243 2.1388 18 7 1.5784 -2.1131 1.2307 19 6 1.4491 -2.7950 2.3860 20 8 1.7162 -2.2556 3.4442 21 6 0.9863 -4.1842 2.3685 22 6 0.8125 -4.9881 3.4701 23 6 0.3591 -6.2393 3.0150 24 16 -0.1291 -7.8344 3.5770 25 6 -0.4361 -8.3646 1.9313 26 6 -0.1829 -7.3840 1.0727 27 6 0.2620 -6.1841 1.6370 28 7 0.6516 -4.9091 1.2438 29 1 0.6826 -4.5834 0.3308 30 1 -0.3633 0.5124 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3632 -1.0277 -0.0015 33 1 1.7637 -0.1578 -2.1389 34 1 1.6053 -1.7215 -1.2982 35 1 4.0157 0.4461 -5.2990 36 1 5.1897 -1.3244 -0.0140 37 1 3.8376 -2.4817 0.0866 38 1 3.9160 0.3389 1.2539 39 1 3.9335 -1.1896 2.1669 40 1 1.3654 -2.5427 0.3876 41 1 0.9912 -4.7093 4.4981 42 1 -0.7859 -9.3487 1.6566 43 1 -0.3124 -7.5051 0.0073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943988812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:21 Heat of formation + Delta-G solvation = 38.470646 kcal Electronic energy + Delta-G solvation = -26729.174645 eV Core-core repulsion = 23094.453473 eV Total energy + Delta-G solvation = -3634.721172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.45081 -41.08322 -39.24930 -36.26007 -36.10559 -34.01199 -33.69117 -32.20974 -31.83858 -29.32206 -27.66577 -27.09406 -24.88442 -24.16078 -23.46706 -22.55163 -21.58024 -21.01937 -20.43676 -19.76525 -18.86202 -17.69536 -17.30085 -16.79463 -16.51132 -16.38262 -16.04327 -15.63767 -15.53932 -15.18909 -15.04328 -14.99579 -14.74037 -14.59837 -14.42287 -14.00741 -13.80070 -13.57731 -13.14688 -13.03372 -12.83470 -12.67598 -12.56439 -12.35467 -12.13533 -11.99964 -11.76940 -11.68567 -11.56557 -11.36753 -11.26588 -10.78301 -10.68779 -10.21001 -9.12271 -8.96060 -8.65791 -8.17116 -5.50587 -0.26475 0.57752 0.85204 1.14047 1.27725 1.38985 1.48519 1.74888 1.76767 2.06586 2.21449 2.40058 3.02283 3.29130 3.57849 3.73418 3.79892 3.90354 3.97680 3.98814 4.22498 4.32050 4.38532 4.48409 4.52332 4.56155 4.61085 4.74842 4.79122 4.82997 4.91149 4.97576 5.00373 5.04138 5.07279 5.18120 5.24909 5.28266 5.41797 5.46119 5.56622 5.84751 6.11256 6.22462 6.40808 6.88515 6.99085 7.59202 7.98418 9.02783 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.003431 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.892758 B = 8158.958976 C = 9116.767223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 H 0.081 0.919 4 C 0.129 3.871 5 N -0.615 5.615 6 C -0.250 4.250 7 H 0.048 0.952 8 C -0.038 4.038 9 N -0.959 5.959 10 Si 0.949 3.051 11 H -0.272 1.272 12 H -0.316 1.316 13 H -0.250 1.250 14 C 0.151 3.849 15 C -0.138 4.138 16 C 0.168 3.832 17 H 0.091 0.909 18 N -0.705 5.705 19 C 0.592 3.408 20 O -0.557 6.557 21 C -0.005 4.005 22 C -0.081 4.081 23 C -0.250 4.250 24 S 0.135 5.865 25 C -0.169 4.169 26 C -0.132 4.132 27 C 0.067 3.933 28 N -0.535 5.535 29 H 0.428 0.572 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.037 0.963 35 H 0.261 0.739 36 H 0.050 0.950 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.156 0.844 42 H 0.207 0.793 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.216 -16.396 13.648 25.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.099 0.901 4 C 0.004 3.996 5 N -0.339 5.339 6 C -0.380 4.380 7 H 0.065 0.935 8 C -0.232 4.232 9 N -0.605 5.605 10 Si 0.777 3.223 11 H -0.198 1.198 12 H -0.245 1.245 13 H -0.174 1.174 14 C 0.026 3.974 15 C -0.178 4.178 16 C 0.064 3.936 17 H 0.109 0.891 18 N -0.356 5.356 19 C 0.380 3.620 20 O -0.436 6.436 21 C -0.120 4.120 22 C -0.112 4.112 23 C -0.369 4.369 24 S 0.395 5.605 25 C -0.305 4.305 26 C -0.165 4.165 27 C -0.053 4.053 28 N -0.139 5.139 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.237 0.763 41 H 0.173 0.827 42 H 0.224 0.776 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.090 -16.530 15.482 26.673 hybrid contribution 0.102 0.738 -3.001 3.092 sum -13.988 -15.792 12.481 24.512 Atomic orbital electron populations 1.21759 0.92992 1.02416 1.02614 1.21838 0.96906 1.00206 0.94147 0.90090 1.21440 0.83547 0.97517 0.97137 1.44417 1.01396 1.70625 1.17492 1.18831 0.97606 1.34971 0.86584 0.93469 1.25962 1.01734 0.99953 0.95573 1.69976 1.45764 1.40189 1.04550 0.85877 0.79716 0.80764 0.75949 1.19838 1.24487 1.17417 1.20956 0.96688 0.94549 0.85208 1.22274 0.95643 1.01721 0.98187 1.20830 0.93564 0.80661 0.98555 0.89128 1.45945 1.67046 1.14268 1.08327 1.17020 0.77128 0.83878 0.84015 1.90838 1.52282 1.69211 1.31295 1.20145 1.12094 0.92888 0.86855 1.20530 1.02411 0.89957 0.98337 1.22951 1.15929 1.01106 0.96932 1.83889 1.68613 1.00906 1.07126 1.25715 1.05885 1.04196 0.94662 1.19207 1.05412 0.89274 1.02589 1.18820 1.05965 0.87957 0.92608 1.41960 1.54260 1.09129 1.08529 0.73246 0.91130 0.92256 0.92098 0.92838 0.94546 0.92985 0.93119 0.95060 0.91182 0.91243 0.76326 0.82684 0.77636 0.81843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 9.05 71.98 0.65 -2.66 16 2 C -0.11 -3.30 2.67 -10.72 -0.03 -3.33 16 3 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 4 C 0.13 4.79 3.18 86.36 0.27 5.06 16 5 N -0.62 -26.94 2.77 -699.08 -1.94 -28.88 16 6 C -0.25 -13.73 10.04 84.03 0.84 -12.89 16 7 H 0.05 2.89 8.05 -2.91 -0.02 2.87 16 8 C -0.04 -2.13 5.24 84.86 0.44 -1.68 16 9 N -0.96 -59.12 13.97 21.65 0.30 -58.82 16 10 Si 0.95 43.44 24.35 68.60 1.67 45.11 16 11 H -0.27 -11.62 6.70 99.48 0.67 -10.95 16 12 H -0.32 -15.05 7.11 99.48 0.71 -14.35 16 13 H -0.25 -10.35 6.45 99.48 0.64 -9.71 16 14 C 0.15 5.62 6.26 86.36 0.54 6.16 16 15 C -0.14 -4.39 5.77 30.67 0.18 -4.22 16 16 C 0.17 4.78 2.21 45.02 0.10 4.88 16 17 H 0.09 2.56 7.57 -2.38 -0.02 2.54 16 18 N -0.70 -18.16 3.59 -446.56 -1.60 -19.77 16 19 C 0.59 16.45 7.74 86.38 0.67 17.12 16 20 O -0.56 -18.77 16.52 -4.48 -0.07 -18.84 16 21 C -0.01 -0.13 7.01 40.14 0.28 0.15 16 22 C -0.08 -2.02 10.60 22.68 0.24 -1.78 16 23 C -0.25 -5.54 7.26 22.86 0.17 -5.38 16 24 S 0.14 2.18 23.31 -56.49 -1.32 0.86 16 25 C -0.17 -2.03 11.13 66.64 0.74 -1.29 16 26 C -0.13 -1.95 10.16 21.49 0.22 -1.73 16 27 C 0.07 1.36 7.67 38.40 0.29 1.65 16 28 N -0.54 -10.95 6.14 -177.13 -1.09 -12.04 16 29 H 0.43 6.96 8.14 -92.71 -0.75 6.21 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.29 7.54 -2.39 -0.02 1.27 16 33 H 0.05 2.27 4.49 -2.39 -0.01 2.26 16 34 H 0.04 1.23 5.48 -2.39 -0.01 1.21 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.05 1.99 7.93 -2.38 -0.02 1.98 16 37 H 0.03 1.10 7.74 -2.39 -0.02 1.09 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.40 9.41 5.81 -92.71 -0.54 8.87 16 41 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 42 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 43 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -69.63 352.87 1.23 -68.40 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -0.34 Total: 23.90 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: 5.61 Total: 0.07 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -4.33 Total: -119.50 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.07 Total: -18.84 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -1.32 Total: 0.86 kcal Total: -69.63 1.23 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943988812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.874 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds