Wall clock time and date at job start Tue Mar 31 2020 18:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.52301 * 2 1 4 4 C 1.53194 * 109.49377 * 120.08032 * 2 1 3 5 5 N 1.46922 * 108.77277 * 174.58485 * 4 2 1 6 6 C 1.36939 * 120.63005 * 126.39446 * 5 4 2 7 7 H 1.08003 * 120.00071 * 332.78915 * 6 5 4 8 8 C 1.38809 * 120.00373 * 152.79475 * 6 5 4 9 9 N 1.31620 * 120.00480 * 159.74993 * 8 6 5 10 10 Si 1.86799 * 119.99863 * 339.74981 * 8 6 5 11 11 H 1.48500 * 109.47352 * 94.89711 * 10 8 6 12 12 H 1.48496 * 109.47254 * 214.90005 * 10 8 6 13 13 H 1.48504 * 109.47085 * 334.89797 * 10 8 6 14 14 C 1.46924 * 118.74083 * 306.39088 * 5 4 2 15 15 C 1.53184 * 108.77597 * 53.60971 * 14 5 4 16 16 C 1.53034 * 109.49575 * 239.91393 * 2 1 3 17 17 H 1.08999 * 109.46788 * 298.70613 * 16 2 1 18 18 N 1.46503 * 109.45914 * 58.66717 * 16 2 1 19 19 C 1.34778 * 119.99947 * 204.99560 * 18 16 2 20 20 O 1.21729 * 119.99901 * 0.02562 * 19 18 16 21 21 C 1.46450 * 120.00161 * 180.02562 * 19 18 16 22 22 C 1.37460 * 125.81230 * 180.02562 * 21 19 18 23 23 C 1.40658 * 107.56249 * 179.97438 * 22 21 19 24 24 S 1.76014 * 142.39782 * 179.97438 * 23 22 21 25 25 C 1.75598 * 91.31117 * 180.02562 * 24 23 22 26 26 C 1.32769 * 110.47303 * 359.97438 * 25 24 23 27 27 C 1.38248 * 108.02984 * 0.02562 * 23 22 21 28 28 N 1.37923 * 125.80233 * 359.71585 * 21 19 18 29 29 H 0.97005 * 125.68999 * 359.97438 * 28 21 19 30 30 H 1.08995 * 109.47680 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47493 * 300.08733 * 1 2 3 32 32 H 1.09007 * 109.46894 * 60.07972 * 1 2 3 33 33 H 1.09003 * 109.58770 * 294.37271 * 4 2 1 34 34 H 1.08995 * 109.58768 * 54.79767 * 4 2 1 35 35 H 0.97001 * 120.00085 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58733 * 293.81774 * 14 5 4 37 37 H 1.09004 * 109.58797 * 173.39986 * 14 5 4 38 38 H 1.09005 * 109.49720 * 185.41703 * 15 14 5 39 39 H 1.09000 * 109.50071 * 65.31937 * 15 14 5 40 40 H 0.97001 * 120.00026 * 24.99947 * 18 16 2 41 41 H 1.08009 * 126.21465 * 0.02562 * 22 21 19 42 42 H 1.07993 * 124.76217 * 179.97438 * 25 24 23 43 43 H 1.07990 * 122.16444 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2496 5 7 3.5045 -0.8292 1.1696 6 6 4.2935 -0.3790 2.1944 7 1 3.9434 0.4158 2.8364 8 6 5.5432 -0.9441 2.4079 9 7 6.4531 -0.2881 3.0966 10 14 5.9337 -2.6355 1.7180 11 1 6.6136 -2.4900 0.4058 12 1 6.8245 -3.3605 2.6593 13 1 4.6735 -3.4006 1.5403 14 6 4.1052 -1.4268 -0.0306 15 6 3.5709 -0.6952 -1.2659 16 6 2.0407 -0.7232 -1.2482 17 1 1.6967 -1.7574 -1.2352 18 7 1.5265 -0.0531 -2.4452 19 6 1.3985 -0.7384 -3.5987 20 8 1.7097 -1.9143 -3.6457 21 6 0.8849 -0.0684 -4.7954 22 6 0.7059 -0.6495 -6.0282 23 6 0.1962 0.3365 -6.8922 24 16 -0.3322 0.5996 -8.5504 25 6 -0.7017 2.2818 -8.2084 26 6 -0.4324 2.5679 -6.9401 27 6 0.0706 1.5112 -6.1742 28 7 0.4931 1.2515 -4.8757 29 1 0.5111 1.8925 -4.1478 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.7637 -0.1579 2.1390 34 1 1.6051 -1.7216 1.2981 35 1 7.3263 -0.6832 3.2461 36 1 3.8375 -2.4819 -0.0866 37 1 5.1895 -1.3248 0.0139 38 1 3.9334 -1.1899 -2.1669 39 1 3.9160 0.3387 -1.2540 40 1 1.2782 0.8839 -2.4077 41 1 0.9173 -1.6768 -6.2862 42 1 -1.0930 2.9850 -8.9285 43 1 -0.5907 3.5529 -6.5268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943988813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:28 Heat of formation + Delta-G solvation = 56.920463 kcal Electronic energy + Delta-G solvation = -26032.404058 eV Core-core repulsion = 22398.482930 eV Total energy + Delta-G solvation = -3633.921128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -41.62107 -39.74859 -37.90235 -35.58665 -34.85889 -32.85051 -31.67479 -31.23652 -30.39449 -28.46635 -26.46999 -25.26409 -23.71074 -22.83620 -21.84776 -21.42503 -20.69911 -20.32394 -19.53146 -18.69916 -16.94414 -16.58877 -16.26948 -15.76488 -15.47824 -15.08655 -14.62028 -14.44786 -14.42184 -14.21609 -13.84947 -13.60292 -13.50899 -13.20562 -13.12407 -12.79968 -12.19250 -12.18171 -12.00986 -11.88931 -11.71669 -11.63310 -11.15302 -11.08961 -10.67993 -10.64074 -10.30690 -10.15963 -10.05558 -10.04064 -9.81733 -9.52310 -8.98981 -8.65692 -8.37817 -7.97881 -7.03597 -5.97891 -3.34734 0.45838 1.22821 1.69708 1.76196 2.43469 2.52308 3.05314 3.20532 3.33172 3.49136 3.52064 4.41953 4.51240 4.57264 4.65671 4.85550 4.91189 5.01990 5.17793 5.19265 5.23801 5.38130 5.43013 5.60811 5.63672 5.67189 5.76343 5.79847 5.93829 5.99715 6.03030 6.14467 6.16687 6.28187 6.30090 6.36981 6.52882 6.57819 6.62955 6.63591 6.85818 6.95698 7.40461 7.91335 8.05271 8.28812 8.89368 9.68435 10.05028 11.17755 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.002500 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.085489 B =11198.831977 C =11581.614302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 H 0.076 0.924 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.086 0.914 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.881 3.119 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.142 4.142 16 C 0.157 3.843 17 H 0.088 0.912 18 N -0.718 5.718 19 C 0.583 3.417 20 O -0.520 6.520 21 C 0.014 3.986 22 C -0.074 4.074 23 C -0.218 4.218 24 S 0.130 5.870 25 C -0.190 4.190 26 C -0.114 4.114 27 C 0.063 3.937 28 N -0.541 5.541 29 H 0.419 0.581 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.391 0.609 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.803 6.348 -20.956 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 H 0.094 0.906 4 C 0.031 3.969 5 N -0.329 5.329 6 C -0.390 4.390 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.712 3.288 11 H -0.216 1.216 12 H -0.231 1.231 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.183 4.183 16 C 0.054 3.946 17 H 0.106 0.894 18 N -0.368 5.368 19 C 0.369 3.631 20 O -0.396 6.396 21 C -0.101 4.101 22 C -0.105 4.105 23 C -0.338 4.338 24 S 0.390 5.610 25 C -0.326 4.326 26 C -0.148 4.148 27 C -0.055 4.055 28 N -0.144 5.144 29 H 0.257 0.743 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.224 0.776 41 H 0.174 0.826 42 H 0.190 0.810 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.487 4.681 -21.979 27.872 hybrid contribution 0.398 0.908 1.231 1.580 sum -16.089 5.589 -20.748 26.844 Atomic orbital electron populations 1.21772 0.95400 1.01828 1.01020 1.21984 0.94841 1.00894 0.96013 0.90584 1.20916 0.84427 0.97096 0.94435 1.44398 1.00723 1.71834 1.15989 1.18899 0.97775 1.14229 1.08124 0.89630 1.25268 0.96421 0.98081 0.97716 1.69829 1.04541 1.37186 1.43517 0.86970 0.77937 0.86816 0.77123 1.21616 1.23104 1.19303 1.21325 0.98151 0.94850 0.85419 1.22424 0.94224 1.02067 0.99568 1.21099 0.94136 0.97251 0.82106 0.89435 1.46160 1.66050 1.13963 1.10599 1.16949 0.78276 0.86305 0.81565 1.90890 1.49863 1.14876 1.83940 1.20470 1.09432 0.83644 0.96554 1.20428 1.02063 0.98889 0.89114 1.22697 1.14272 0.98188 0.98689 1.83953 1.66542 1.05171 1.05380 1.25236 1.08024 0.99959 0.99380 1.18899 1.04331 0.98456 0.93077 1.18350 1.06599 0.95300 0.85275 1.41972 1.53332 1.10005 1.09098 0.74301 0.92670 0.92356 0.93586 0.91312 0.95566 0.92727 0.95246 0.90725 0.92110 0.91590 0.77572 0.82559 0.81035 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.03 37.16 0.34 -1.31 16 2 C -0.12 -1.70 2.46 -90.50 -0.22 -1.93 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C 0.16 2.93 5.80 -3.71 -0.02 2.91 16 5 N -0.61 -14.00 2.77 -172.33 -0.48 -14.48 16 6 C -0.26 -7.17 10.04 -15.06 -0.15 -7.32 16 7 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 8 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 9 N -0.91 -27.64 13.97 55.49 0.78 -26.86 16 10 Si 0.88 22.49 24.35 -169.99 -4.14 18.35 16 11 H -0.29 -7.19 6.70 56.52 0.38 -6.81 16 12 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 13 H -0.27 -6.72 6.45 56.52 0.36 -6.36 16 14 C 0.13 2.82 4.19 -3.72 -0.02 2.80 16 15 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 16 C 0.16 2.42 1.88 -67.89 -0.13 2.29 16 17 H 0.09 1.50 7.57 -51.93 -0.39 1.11 16 18 N -0.72 -8.85 4.36 -55.14 -0.24 -9.09 16 19 C 0.58 8.12 7.74 -12.95 -0.10 8.02 16 20 O -0.52 -9.19 16.52 5.16 0.09 -9.11 16 21 C 0.01 0.16 7.01 -82.10 -0.58 -0.41 16 22 C -0.07 -0.90 10.60 -38.95 -0.41 -1.31 16 23 C -0.22 -2.38 7.26 -38.66 -0.28 -2.66 16 24 S 0.13 1.09 23.31 -107.50 -2.51 -1.42 16 25 C -0.19 -1.28 11.13 28.86 0.32 -0.96 16 26 C -0.11 -0.86 10.16 -40.85 -0.42 -1.27 16 27 C 0.06 0.62 7.67 -84.00 -0.64 -0.02 16 28 N -0.54 -4.95 6.14 -7.34 -0.05 -5.00 16 29 H 0.42 2.60 8.14 -40.82 -0.33 2.27 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.45 7.36 -51.92 -0.38 0.07 16 33 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.03 0.65 6.98 -51.93 -0.36 0.29 16 37 H 0.07 1.80 4.50 -51.93 -0.23 1.57 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.39 3.64 7.38 -40.82 -0.30 3.34 16 41 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.17 0.65 8.06 -52.49 -0.42 0.22 16 43 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -33.21 356.80 -9.56 -42.77 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.84 Total: 2.75 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.55 Total: -3.30 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.01 Total: -55.43 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.14 Total: 18.35 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.51 Total: -1.42 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.21 -9.56 -42.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943988813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.695 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds