Wall clock time and date at job start Tue Mar 31 2020 18:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.52301 * 2 1 4 4 C 1.53194 * 109.49377 * 120.08032 * 2 1 3 5 5 N 1.46922 * 108.77277 * 174.58485 * 4 2 1 6 6 C 1.36939 * 120.63005 * 126.39446 * 5 4 2 7 7 H 1.08003 * 120.00071 * 332.78915 * 6 5 4 8 8 C 1.38809 * 120.00373 * 152.79475 * 6 5 4 9 9 N 1.31620 * 120.00480 * 159.74993 * 8 6 5 10 10 Si 1.86799 * 119.99863 * 339.74981 * 8 6 5 11 11 H 1.48500 * 109.47352 * 94.89711 * 10 8 6 12 12 H 1.48496 * 109.47254 * 214.90005 * 10 8 6 13 13 H 1.48504 * 109.47085 * 334.89797 * 10 8 6 14 14 C 1.46924 * 118.74083 * 306.39088 * 5 4 2 15 15 C 1.53184 * 108.77597 * 53.60971 * 14 5 4 16 16 C 1.53034 * 109.49575 * 239.91393 * 2 1 3 17 17 H 1.08999 * 109.46788 * 298.70613 * 16 2 1 18 18 N 1.46503 * 109.45914 * 58.66717 * 16 2 1 19 19 C 1.34778 * 119.99947 * 204.99560 * 18 16 2 20 20 O 1.21729 * 119.99901 * 0.02562 * 19 18 16 21 21 C 1.46450 * 120.00161 * 180.02562 * 19 18 16 22 22 C 1.37460 * 125.81230 * 180.02562 * 21 19 18 23 23 C 1.40658 * 107.56249 * 179.97438 * 22 21 19 24 24 S 1.76014 * 142.39782 * 179.97438 * 23 22 21 25 25 C 1.75598 * 91.31117 * 180.02562 * 24 23 22 26 26 C 1.32769 * 110.47303 * 359.97438 * 25 24 23 27 27 C 1.38248 * 108.02984 * 0.02562 * 23 22 21 28 28 N 1.37923 * 125.80233 * 359.71585 * 21 19 18 29 29 H 0.97005 * 125.68999 * 359.97438 * 28 21 19 30 30 H 1.08995 * 109.47680 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47493 * 300.08733 * 1 2 3 32 32 H 1.09007 * 109.46894 * 60.07972 * 1 2 3 33 33 H 1.09003 * 109.58770 * 294.37271 * 4 2 1 34 34 H 1.08995 * 109.58768 * 54.79767 * 4 2 1 35 35 H 0.97001 * 120.00085 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.58733 * 293.81774 * 14 5 4 37 37 H 1.09004 * 109.58797 * 173.39986 * 14 5 4 38 38 H 1.09005 * 109.49720 * 185.41703 * 15 14 5 39 39 H 1.09000 * 109.50071 * 65.31937 * 15 14 5 40 40 H 0.97001 * 120.00026 * 24.99947 * 18 16 2 41 41 H 1.08009 * 126.21465 * 0.02562 * 22 21 19 42 42 H 1.07993 * 124.76217 * 179.97438 * 25 24 23 43 43 H 1.07990 * 122.16444 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 1.2496 5 7 3.5045 -0.8292 1.1696 6 6 4.2935 -0.3790 2.1944 7 1 3.9434 0.4158 2.8364 8 6 5.5432 -0.9441 2.4079 9 7 6.4531 -0.2881 3.0966 10 14 5.9337 -2.6355 1.7180 11 1 6.6136 -2.4900 0.4058 12 1 6.8245 -3.3605 2.6593 13 1 4.6735 -3.4006 1.5403 14 6 4.1052 -1.4268 -0.0306 15 6 3.5709 -0.6952 -1.2659 16 6 2.0407 -0.7232 -1.2482 17 1 1.6967 -1.7574 -1.2352 18 7 1.5265 -0.0531 -2.4452 19 6 1.3985 -0.7384 -3.5987 20 8 1.7097 -1.9143 -3.6457 21 6 0.8849 -0.0684 -4.7954 22 6 0.7059 -0.6495 -6.0282 23 6 0.1962 0.3365 -6.8922 24 16 -0.3322 0.5996 -8.5504 25 6 -0.7017 2.2818 -8.2084 26 6 -0.4324 2.5679 -6.9401 27 6 0.0706 1.5112 -6.1742 28 7 0.4931 1.2515 -4.8757 29 1 0.5111 1.8925 -4.1478 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.7637 -0.1579 2.1390 34 1 1.6051 -1.7216 1.2981 35 1 7.3263 -0.6832 3.2461 36 1 3.8375 -2.4819 -0.0866 37 1 5.1895 -1.3248 0.0139 38 1 3.9334 -1.1899 -2.1669 39 1 3.9160 0.3387 -1.2540 40 1 1.2782 0.8839 -2.4077 41 1 0.9173 -1.6768 -6.2862 42 1 -1.0930 2.9850 -8.9285 43 1 -0.5907 3.5529 -6.5268 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943988813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:27 Heat of formation + Delta-G solvation = 34.430490 kcal Electronic energy + Delta-G solvation = -26033.379297 eV Core-core repulsion = 22398.482930 eV Total energy + Delta-G solvation = -3634.896366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43553 -40.92004 -39.29848 -36.40022 -36.24135 -34.32470 -33.40563 -32.20916 -31.83272 -29.36410 -27.85393 -26.82503 -24.69664 -23.92612 -23.14653 -22.91746 -21.55241 -21.45843 -20.58501 -19.61925 -18.80293 -17.72653 -17.48791 -16.85236 -16.47756 -16.39199 -16.13352 -15.57935 -15.46435 -15.15102 -15.02987 -14.88404 -14.81144 -14.66068 -14.30918 -13.99182 -13.76985 -13.62359 -13.33404 -12.86803 -12.82969 -12.74291 -12.54369 -12.25616 -12.14004 -11.98408 -11.77365 -11.75014 -11.52330 -11.47447 -11.23499 -10.78426 -10.77338 -10.21088 -9.12208 -8.99089 -8.66161 -8.19172 -5.50822 -0.26581 0.57932 0.84091 1.16107 1.27514 1.38579 1.46467 1.71847 1.77898 2.03638 2.19054 2.38437 3.01601 3.29561 3.58227 3.72122 3.82442 3.86667 3.98879 4.04860 4.18471 4.37075 4.37873 4.51732 4.54903 4.56647 4.69762 4.76744 4.76823 4.85574 4.87550 4.94566 5.02013 5.06964 5.08483 5.14827 5.26417 5.33695 5.40863 5.47697 5.55774 5.83830 6.10710 6.26946 6.44776 6.87502 7.00505 7.58675 7.99690 9.00280 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024727 B = 0.002500 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.085489 B =11198.831977 C =11581.614302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.079 0.921 4 C 0.150 3.850 5 N -0.619 5.619 6 C -0.243 4.243 7 H 0.062 0.938 8 C -0.032 4.032 9 N -0.954 5.954 10 Si 0.937 3.063 11 H -0.282 1.282 12 H -0.310 1.310 13 H -0.262 1.262 14 C 0.125 3.875 15 C -0.133 4.133 16 C 0.167 3.833 17 H 0.073 0.927 18 N -0.702 5.702 19 C 0.588 3.412 20 O -0.564 6.564 21 C -0.002 4.002 22 C -0.087 4.087 23 C -0.252 4.252 24 S 0.125 5.875 25 C -0.169 4.169 26 C -0.128 4.128 27 C 0.071 3.929 28 N -0.528 5.528 29 H 0.433 0.567 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.028 0.972 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.409 0.591 41 H 0.149 0.851 42 H 0.207 0.793 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.388 8.054 -23.223 31.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.123 4.123 3 H 0.098 0.902 4 C 0.025 3.975 5 N -0.343 5.343 6 C -0.373 4.373 7 H 0.079 0.921 8 C -0.226 4.226 9 N -0.600 5.600 10 Si 0.767 3.233 11 H -0.209 1.209 12 H -0.239 1.239 13 H -0.186 1.186 14 C 0.000 4.000 15 C -0.173 4.173 16 C 0.063 3.937 17 H 0.091 0.909 18 N -0.352 5.352 19 C 0.376 3.624 20 O -0.442 6.442 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.372 4.372 24 S 0.384 5.616 25 C -0.305 4.305 26 C -0.160 4.160 27 C -0.049 4.049 28 N -0.132 5.132 29 H 0.274 0.726 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.246 0.754 41 H 0.167 0.833 42 H 0.224 0.776 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -19.128 6.422 -24.257 31.552 hybrid contribution 1.090 0.472 1.818 2.172 sum -18.038 6.894 -22.439 29.604 Atomic orbital electron populations 1.21723 0.92411 1.02305 1.02852 1.21784 0.97112 1.00041 0.93356 0.90242 1.21156 0.81662 0.98012 0.96639 1.44524 1.02456 1.71877 1.15428 1.18893 0.97754 1.12681 1.07966 0.92051 1.25816 0.96792 1.00934 0.99108 1.69937 1.05093 1.38641 1.46350 0.86060 0.77723 0.83057 0.76497 1.20942 1.23882 1.18643 1.21281 0.96899 0.95232 0.86635 1.22260 0.96306 1.01310 0.97414 1.20781 0.92201 0.97107 0.83617 0.90855 1.45823 1.65405 1.14691 1.09307 1.17139 0.77419 0.85767 0.82117 1.90868 1.51862 1.16852 1.84648 1.19994 1.11232 0.84871 0.95548 1.20530 1.02285 0.99097 0.89899 1.22936 1.15594 0.98472 1.00202 1.84000 1.66492 1.06980 1.04090 1.25728 1.05942 0.99070 0.99741 1.19210 1.04592 0.99139 0.93075 1.18810 1.05306 0.95610 0.85169 1.41841 1.52599 1.09215 1.09583 0.72595 0.92903 0.91123 0.91214 0.91301 0.94942 0.92977 0.95415 0.93179 0.92186 0.91544 0.75405 0.83350 0.77615 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.03 71.98 0.65 -2.02 16 2 C -0.10 -2.76 2.46 -10.72 -0.03 -2.79 16 3 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.15 5.39 5.80 86.36 0.50 5.89 16 5 N -0.62 -28.44 2.77 -699.11 -1.94 -30.38 16 6 C -0.24 -13.52 10.04 84.03 0.84 -12.67 16 7 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 8 C -0.03 -1.84 5.24 84.86 0.44 -1.40 16 9 N -0.95 -59.77 13.97 21.65 0.30 -59.47 16 10 Si 0.94 47.56 24.35 68.60 1.67 49.23 16 11 H -0.28 -13.87 6.70 99.48 0.67 -13.20 16 12 H -0.31 -15.95 7.11 99.48 0.71 -15.24 16 13 H -0.26 -12.84 6.45 99.48 0.64 -12.20 16 14 C 0.13 5.46 4.19 86.36 0.36 5.83 16 15 C -0.13 -4.69 5.65 30.67 0.17 -4.51 16 16 C 0.17 4.88 1.88 45.02 0.08 4.96 16 17 H 0.07 2.43 7.57 -2.39 -0.02 2.41 16 18 N -0.70 -15.85 4.36 -446.56 -1.95 -17.80 16 19 C 0.59 15.78 7.74 86.38 0.67 16.45 16 20 O -0.56 -19.96 16.52 -4.44 -0.07 -20.03 16 21 C 0.00 -0.04 7.01 40.14 0.28 0.24 16 22 C -0.09 -2.08 10.60 22.68 0.24 -1.84 16 23 C -0.25 -5.18 7.26 22.86 0.17 -5.01 16 24 S 0.13 1.86 23.31 -56.49 -1.32 0.54 16 25 C -0.17 -1.61 11.13 66.64 0.74 -0.87 16 26 C -0.13 -1.41 10.16 21.49 0.22 -1.20 16 27 C 0.07 1.21 7.67 38.40 0.29 1.50 16 28 N -0.53 -8.37 6.14 -177.13 -1.09 -9.46 16 29 H 0.43 3.95 8.14 -92.70 -0.75 3.20 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.08 7.36 -2.38 -0.02 1.06 16 33 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.03 1.22 6.98 -2.39 -0.02 1.21 16 37 H 0.05 2.43 4.50 -2.38 -0.01 2.42 16 38 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.41 6.33 7.38 -92.71 -0.68 5.64 16 41 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 42 H 0.21 0.49 8.06 -2.91 -0.02 0.46 16 43 H 0.17 0.89 8.06 -2.92 -0.02 0.86 16 Total: -1.00 -74.46 356.80 0.77 -73.69 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -0.49 Total: 11.12 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 5.64 Total: 2.56 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -4.67 Total: -117.10 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.07 Total: -20.03 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.67 Total: 49.23 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -74.46 0.77 -73.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943988813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.121 kcal (2) G-P(sol) polarization free energy of solvation -74.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds