Wall clock time and date at job start Tue Mar 31 2020 18:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.49379 * 2 1 4 4 C 1.53625 * 109.43139 * 120.21769 * 2 1 3 5 5 N 1.46934 * 108.54348 * 174.72566 * 4 2 1 6 6 C 1.36943 * 120.62782 * 126.37064 * 5 4 2 7 7 H 1.07993 * 119.99880 * 332.96201 * 6 5 4 8 8 C 1.38806 * 119.99459 * 152.96531 * 6 5 4 9 9 N 1.31626 * 119.99805 * 158.74910 * 8 6 5 10 10 Si 1.86795 * 120.00497 * 339.02394 * 8 6 5 11 11 H 1.48499 * 109.47486 * 95.06923 * 10 8 6 12 12 H 1.48501 * 109.47225 * 215.07472 * 10 8 6 13 13 H 1.48500 * 109.47084 * 335.07061 * 10 8 6 14 14 C 1.46921 * 118.73894 * 306.09912 * 5 4 2 15 15 C 1.53191 * 108.77688 * 53.85870 * 14 5 4 16 16 C 1.53038 * 109.50087 * 239.93197 * 2 1 3 17 17 H 1.08998 * 109.45030 * 58.66928 * 16 2 1 18 18 N 1.46497 * 109.46017 * 298.70356 * 16 2 1 19 19 C 1.34774 * 120.00402 * 154.93177 * 18 16 2 20 20 O 1.21736 * 119.99499 * 359.97438 * 19 18 16 21 21 C 1.46448 * 120.00655 * 180.02562 * 19 18 16 22 22 C 1.37461 * 125.81247 * 180.02562 * 21 19 18 23 23 C 1.40654 * 107.55966 * 179.97438 * 22 21 19 24 24 S 1.76025 * 142.39496 * 179.97438 * 23 22 21 25 25 C 1.75598 * 91.30815 * 180.02562 * 24 23 22 26 26 C 1.32769 * 110.47595 * 0.02562 * 25 24 23 27 27 C 1.38243 * 108.03246 * 0.02562 * 23 22 21 28 28 N 1.37923 * 125.80089 * 359.71694 * 21 19 18 29 29 H 0.96996 * 125.68849 * 0.02784 * 28 21 19 30 30 H 1.09001 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47724 * 300.06445 * 1 2 3 32 32 H 1.08999 * 109.47275 * 60.07071 * 1 2 3 33 33 H 1.09002 * 109.73812 * 54.99108 * 4 2 1 34 34 H 1.08996 * 109.66903 * 294.42029 * 4 2 1 35 35 H 0.96994 * 120.00149 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.58962 * 173.64479 * 14 5 4 37 37 H 1.08998 * 109.58398 * 293.92843 * 14 5 4 38 38 H 1.08994 * 109.49942 * 65.31941 * 15 14 5 39 39 H 1.08998 * 109.49537 * 185.38469 * 15 14 5 40 40 H 0.97000 * 119.99703 * 334.92773 * 18 16 2 41 41 H 1.08008 * 126.21900 * 359.94930 * 22 21 19 42 42 H 1.07999 * 124.75883 * 179.97438 * 25 24 23 43 43 H 1.07998 * 122.16633 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0410 -0.7291 1.2519 5 7 3.5046 -0.8293 1.1695 6 6 4.2935 -0.3797 2.1945 7 1 3.9405 0.4099 2.8412 8 6 5.5469 -0.9388 2.4022 9 7 6.4613 -0.2728 3.0750 10 14 5.9384 -2.6333 1.7204 11 1 6.6116 -2.4938 0.4041 12 1 6.8356 -3.3505 2.6617 13 1 4.6793 -3.4027 1.5533 14 6 4.1053 -1.4265 -0.0310 15 6 3.5709 -0.6946 -1.2660 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2238 -2.1388 18 7 1.5784 -2.1127 -1.2312 19 6 1.4490 -2.7943 -2.3867 20 8 1.7160 -2.2547 -3.4448 21 6 0.9862 -4.1836 -2.3696 22 6 0.8123 -4.9871 -3.4713 23 6 0.3590 -6.2386 -3.0166 24 16 -0.1238 -7.8353 -3.5786 25 6 -0.4375 -8.3636 -1.9336 26 6 -0.1849 -7.3832 -1.0748 27 6 0.2609 -6.1833 -1.6387 28 7 0.6563 -4.9104 -1.2448 29 1 0.6917 -4.5863 -0.3312 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8893 32 1 -0.3634 0.5127 -0.8906 33 1 1.6084 -1.7286 1.2982 34 1 1.7629 -0.1667 2.1432 35 1 7.3371 -0.6636 3.2205 36 1 5.1896 -1.3244 0.0135 37 1 3.8397 -2.4822 -0.0858 38 1 3.9159 0.3392 -1.2539 39 1 3.9339 -1.1888 -2.1672 40 1 1.3654 -2.5426 -0.3882 41 1 0.9909 -4.7081 -4.4993 42 1 -0.7877 -9.3477 -1.6592 43 1 -0.3144 -7.5044 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943988814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:34 Heat of formation + Delta-G solvation = 58.707336 kcal Electronic energy + Delta-G solvation = -26717.479801 eV Core-core repulsion = 23083.636158 eV Total energy + Delta-G solvation = -3633.843643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.11 seconds Orbital eigenvalues (eV) -41.54111 -39.85931 -37.87709 -35.49569 -34.57485 -32.77522 -31.66780 -31.13921 -30.52560 -28.37930 -26.45865 -25.37992 -23.79000 -22.87385 -21.87533 -21.63155 -20.67134 -20.03774 -18.99852 -18.85698 -16.97380 -16.64169 -15.84273 -15.65542 -15.41635 -15.18527 -14.69504 -14.47634 -14.29734 -14.21937 -13.82774 -13.58273 -13.54557 -13.48118 -13.05064 -12.63192 -12.35193 -12.09179 -11.87661 -11.82654 -11.66905 -11.61841 -11.38031 -11.07868 -10.75813 -10.65499 -10.31594 -10.10802 -10.07126 -9.95069 -9.78190 -9.57474 -9.00224 -8.67298 -8.28762 -7.89008 -7.08529 -6.03409 -3.39663 0.55151 1.31424 1.77960 1.84324 2.53094 2.63399 3.15590 3.26798 3.29088 3.39885 3.42520 4.44660 4.51588 4.66341 4.74648 4.81680 4.93147 5.12017 5.14286 5.22439 5.27240 5.34586 5.51450 5.59637 5.69303 5.74926 5.75992 5.77779 5.85396 5.92535 6.04349 6.14696 6.23216 6.25281 6.33078 6.41038 6.47969 6.54099 6.57827 6.64182 6.82644 7.05175 7.48760 7.85655 8.12292 8.23853 8.83912 9.62954 9.98941 11.12337 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.003538 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.704265 B = 7911.171129 C = 8857.208062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.090 0.910 4 C 0.155 3.845 5 N -0.604 5.604 6 C -0.263 4.263 7 H 0.087 0.913 8 C 0.026 3.974 9 N -0.905 5.905 10 Si 0.883 3.117 11 H -0.289 1.289 12 H -0.303 1.303 13 H -0.274 1.274 14 C 0.129 3.871 15 C -0.147 4.147 16 C 0.160 3.840 17 H 0.084 0.916 18 N -0.712 5.712 19 C 0.585 3.415 20 O -0.526 6.526 21 C 0.014 3.986 22 C -0.075 4.075 23 C -0.218 4.218 24 S 0.127 5.873 25 C -0.190 4.190 26 C -0.113 4.113 27 C 0.064 3.936 28 N -0.540 5.540 29 H 0.420 0.580 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.013 0.987 34 H 0.068 0.932 35 H 0.263 0.737 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.395 0.605 41 H 0.156 0.844 42 H 0.172 0.828 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 -12.151 -9.830 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 H 0.108 0.892 4 C 0.029 3.971 5 N -0.328 5.328 6 C -0.391 4.391 7 H 0.104 0.896 8 C -0.173 4.173 9 N -0.547 5.547 10 Si 0.713 3.287 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.199 1.199 14 C 0.003 3.997 15 C -0.188 4.188 16 C 0.057 3.943 17 H 0.102 0.898 18 N -0.363 5.363 19 C 0.371 3.629 20 O -0.402 6.402 21 C -0.101 4.101 22 C -0.106 4.106 23 C -0.338 4.338 24 S 0.386 5.614 25 C -0.326 4.326 26 C -0.146 4.146 27 C -0.055 4.055 28 N -0.143 5.143 29 H 0.258 0.742 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.230 0.770 41 H 0.174 0.826 42 H 0.189 0.811 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.017 -12.313 -11.716 23.355 hybrid contribution 0.482 -0.451 2.049 2.153 sum -15.536 -12.764 -9.666 22.310 Atomic orbital electron populations 1.21763 0.95377 1.01266 1.01595 1.22043 0.94884 1.01162 0.95996 0.89168 1.21016 0.84577 0.96176 0.95352 1.44375 1.00537 1.71963 1.15894 1.18901 0.97560 1.14628 1.08031 0.89573 1.25257 0.96335 0.97998 0.97735 1.69841 1.04148 1.36853 1.43903 0.86961 0.77604 0.86974 0.77139 1.21694 1.23125 1.19912 1.21268 0.98094 0.94406 0.85884 1.22407 0.94494 1.02561 0.99288 1.20980 0.94628 0.79919 0.98805 0.89813 1.46071 1.67275 1.14842 1.08100 1.16924 0.77925 0.83494 0.84594 1.90857 1.50710 1.68338 1.30329 1.20457 1.10247 0.93388 0.86022 1.20390 1.02656 0.89257 0.98262 1.22677 1.14797 1.00150 0.96192 1.83891 1.69051 1.02372 1.06080 1.25216 1.08298 1.03175 0.95918 1.18924 1.04586 0.90008 1.01101 1.18353 1.06950 0.87651 0.92506 1.42021 1.54437 1.09288 1.08509 0.74177 0.93323 0.92382 0.92919 0.96883 0.91305 0.92684 0.91014 0.96005 0.90426 0.92014 0.76980 0.82590 0.81054 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.05 37.15 0.34 -1.30 16 2 C -0.12 -1.74 2.69 -90.28 -0.24 -1.98 16 3 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.16 2.68 5.53 -3.48 -0.02 2.66 16 5 N -0.60 -13.35 2.77 -172.05 -0.48 -13.82 16 6 C -0.26 -7.03 10.04 -15.06 -0.15 -7.18 16 7 H 0.09 2.45 8.05 -52.49 -0.42 2.03 16 8 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 9 N -0.90 -27.23 13.97 55.49 0.78 -26.45 16 10 Si 0.88 22.10 24.35 -169.99 -4.14 17.96 16 11 H -0.29 -7.17 6.70 56.52 0.38 -6.79 16 12 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 13 H -0.27 -6.62 6.49 56.52 0.37 -6.25 16 14 C 0.13 2.72 3.94 -3.71 -0.01 2.71 16 15 C -0.15 -2.63 5.77 -26.61 -0.15 -2.78 16 16 C 0.16 2.43 2.21 -67.89 -0.15 2.28 16 17 H 0.08 1.28 7.57 -51.93 -0.39 0.88 16 18 N -0.71 -9.96 3.60 -55.14 -0.20 -10.16 16 19 C 0.58 8.77 7.74 -12.96 -0.10 8.67 16 20 O -0.53 -9.36 16.52 5.16 0.09 -9.28 16 21 C 0.01 0.18 7.01 -82.10 -0.58 -0.39 16 22 C -0.07 -0.99 10.60 -38.95 -0.41 -1.40 16 23 C -0.22 -2.65 7.26 -38.67 -0.28 -2.93 16 24 S 0.13 1.20 23.31 -107.50 -2.51 -1.31 16 25 C -0.19 -1.53 11.13 28.86 0.32 -1.21 16 26 C -0.11 -1.03 10.16 -40.84 -0.42 -1.45 16 27 C 0.06 0.74 7.67 -84.00 -0.64 0.09 16 28 N -0.54 -6.13 6.14 -7.34 -0.05 -6.18 16 29 H 0.42 3.86 8.14 -40.82 -0.33 3.53 16 30 H 0.05 0.52 7.54 -51.93 -0.39 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.01 0.21 6.63 -51.93 -0.34 -0.13 16 34 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 1.71 4.49 -51.93 -0.23 1.48 16 37 H 0.02 0.46 6.60 -51.93 -0.34 0.12 16 38 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.39 5.01 5.80 -40.82 -0.24 4.77 16 41 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 352.95 15.07 5.32 5.32 Total: -1.00 -32.15 352.95 -9.46 -41.61 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.68 Total: 5.87 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.59 Total: -3.56 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.05 Total: -56.61 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.14 Total: 17.96 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.51 Total: -1.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.15 -9.46 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943988814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.319 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds