Wall clock time and date at job start Tue Mar 31 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.49379 * 2 1 4 4 C 1.53625 * 109.43139 * 120.21769 * 2 1 3 5 5 N 1.46934 * 108.54348 * 174.72566 * 4 2 1 6 6 C 1.36943 * 120.62782 * 126.37064 * 5 4 2 7 7 H 1.07993 * 119.99880 * 332.96201 * 6 5 4 8 8 C 1.38806 * 119.99459 * 152.96531 * 6 5 4 9 9 N 1.31626 * 119.99805 * 158.74910 * 8 6 5 10 10 Si 1.86795 * 120.00497 * 339.02394 * 8 6 5 11 11 H 1.48499 * 109.47486 * 95.06923 * 10 8 6 12 12 H 1.48501 * 109.47225 * 215.07472 * 10 8 6 13 13 H 1.48500 * 109.47084 * 335.07061 * 10 8 6 14 14 C 1.46921 * 118.73894 * 306.09912 * 5 4 2 15 15 C 1.53191 * 108.77688 * 53.85870 * 14 5 4 16 16 C 1.53038 * 109.50087 * 239.93197 * 2 1 3 17 17 H 1.08998 * 109.45030 * 58.66928 * 16 2 1 18 18 N 1.46497 * 109.46017 * 298.70356 * 16 2 1 19 19 C 1.34774 * 120.00402 * 154.93177 * 18 16 2 20 20 O 1.21736 * 119.99499 * 359.97438 * 19 18 16 21 21 C 1.46448 * 120.00655 * 180.02562 * 19 18 16 22 22 C 1.37461 * 125.81247 * 180.02562 * 21 19 18 23 23 C 1.40654 * 107.55966 * 179.97438 * 22 21 19 24 24 S 1.76025 * 142.39496 * 179.97438 * 23 22 21 25 25 C 1.75598 * 91.30815 * 180.02562 * 24 23 22 26 26 C 1.32769 * 110.47595 * 0.02562 * 25 24 23 27 27 C 1.38243 * 108.03246 * 0.02562 * 23 22 21 28 28 N 1.37923 * 125.80089 * 359.71694 * 21 19 18 29 29 H 0.96996 * 125.68849 * 0.02784 * 28 21 19 30 30 H 1.09001 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47724 * 300.06445 * 1 2 3 32 32 H 1.08999 * 109.47275 * 60.07071 * 1 2 3 33 33 H 1.09002 * 109.73812 * 54.99108 * 4 2 1 34 34 H 1.08996 * 109.66903 * 294.42029 * 4 2 1 35 35 H 0.96994 * 120.00149 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.58962 * 173.64479 * 14 5 4 37 37 H 1.08998 * 109.58398 * 293.92843 * 14 5 4 38 38 H 1.08994 * 109.49942 * 65.31941 * 15 14 5 39 39 H 1.08998 * 109.49537 * 185.38469 * 15 14 5 40 40 H 0.97000 * 119.99703 * 334.92773 * 18 16 2 41 41 H 1.08008 * 126.21900 * 359.94930 * 22 21 19 42 42 H 1.07999 * 124.75883 * 179.97438 * 25 24 23 43 43 H 1.07998 * 122.16633 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0410 -0.7291 1.2519 5 7 3.5046 -0.8293 1.1695 6 6 4.2935 -0.3797 2.1945 7 1 3.9405 0.4099 2.8412 8 6 5.5469 -0.9388 2.4022 9 7 6.4613 -0.2728 3.0750 10 14 5.9384 -2.6333 1.7204 11 1 6.6116 -2.4938 0.4041 12 1 6.8356 -3.3505 2.6617 13 1 4.6793 -3.4027 1.5533 14 6 4.1053 -1.4265 -0.0310 15 6 3.5709 -0.6946 -1.2660 16 6 2.0408 -0.7228 -1.2485 17 1 1.6582 -0.2238 -2.1388 18 7 1.5784 -2.1127 -1.2312 19 6 1.4490 -2.7943 -2.3867 20 8 1.7160 -2.2547 -3.4448 21 6 0.9862 -4.1836 -2.3696 22 6 0.8123 -4.9871 -3.4713 23 6 0.3590 -6.2386 -3.0166 24 16 -0.1238 -7.8353 -3.5786 25 6 -0.4375 -8.3636 -1.9336 26 6 -0.1849 -7.3832 -1.0748 27 6 0.2609 -6.1833 -1.6387 28 7 0.6563 -4.9104 -1.2448 29 1 0.6917 -4.5863 -0.3312 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5148 0.8893 32 1 -0.3634 0.5127 -0.8906 33 1 1.6084 -1.7286 1.2982 34 1 1.7629 -0.1667 2.1432 35 1 7.3371 -0.6636 3.2205 36 1 5.1896 -1.3244 0.0135 37 1 3.8397 -2.4822 -0.0858 38 1 3.9159 0.3392 -1.2539 39 1 3.9339 -1.1888 -2.1672 40 1 1.3654 -2.5426 -0.3882 41 1 0.9909 -4.7081 -4.4993 42 1 -0.7877 -9.3477 -1.6592 43 1 -0.3144 -7.5044 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943988814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:33 Heat of formation + Delta-G solvation = 37.851428 kcal Electronic energy + Delta-G solvation = -26718.384182 eV Core-core repulsion = 23083.636158 eV Total energy + Delta-G solvation = -3634.748023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.46137 -41.07529 -39.23330 -36.27065 -36.17662 -34.13220 -33.41690 -32.26827 -31.86595 -29.32657 -27.81418 -27.01740 -24.77975 -23.90674 -23.37093 -23.06402 -21.56975 -21.03723 -20.34481 -19.78106 -18.80261 -17.69072 -17.31163 -16.79711 -16.59723 -16.39750 -16.04587 -15.63724 -15.54928 -15.27905 -15.05361 -14.95577 -14.81864 -14.62184 -14.24346 -14.02050 -13.79507 -13.49925 -13.25073 -12.96369 -12.85022 -12.84187 -12.57086 -12.31217 -12.13601 -11.97489 -11.77535 -11.71905 -11.48106 -11.40470 -11.25121 -10.79346 -10.76060 -10.21114 -9.13343 -8.96626 -8.66802 -8.19925 -5.50569 -0.27428 0.56814 0.83811 1.13581 1.26441 1.34155 1.42475 1.73542 1.76300 2.06305 2.20067 2.37135 2.99630 3.29905 3.59561 3.74559 3.79640 3.88595 3.97770 4.02844 4.18224 4.35129 4.37523 4.47502 4.51269 4.54510 4.69155 4.74468 4.82629 4.85614 4.89835 4.94930 4.98923 5.06489 5.08505 5.18336 5.26914 5.34779 5.40587 5.49193 5.55499 5.83444 6.10545 6.22828 6.41105 6.87348 6.98549 7.58792 7.98766 8.99792 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013950 B = 0.003538 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.704265 B = 7911.171129 C = 8857.208062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 H 0.080 0.920 4 C 0.150 3.850 5 N -0.615 5.615 6 C -0.243 4.243 7 H 0.059 0.941 8 C -0.032 4.032 9 N -0.955 5.955 10 Si 0.940 3.060 11 H -0.290 1.290 12 H -0.312 1.312 13 H -0.256 1.256 14 C 0.130 3.870 15 C -0.141 4.141 16 C 0.168 3.832 17 H 0.089 0.911 18 N -0.704 5.704 19 C 0.589 3.411 20 O -0.559 6.559 21 C -0.006 4.006 22 C -0.083 4.083 23 C -0.251 4.251 24 S 0.133 5.867 25 C -0.168 4.168 26 C -0.131 4.131 27 C 0.068 3.932 28 N -0.534 5.534 29 H 0.429 0.571 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.260 0.740 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.403 0.597 41 H 0.154 0.846 42 H 0.207 0.793 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.971 -14.596 -10.256 26.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.129 4.129 3 H 0.099 0.901 4 C 0.025 3.975 5 N -0.339 5.339 6 C -0.373 4.373 7 H 0.077 0.923 8 C -0.227 4.227 9 N -0.601 5.601 10 Si 0.770 3.230 11 H -0.218 1.218 12 H -0.241 1.241 13 H -0.180 1.180 14 C 0.005 3.995 15 C -0.181 4.181 16 C 0.064 3.936 17 H 0.107 0.893 18 N -0.355 5.355 19 C 0.377 3.623 20 O -0.438 6.438 21 C -0.121 4.121 22 C -0.114 4.114 23 C -0.370 4.370 24 S 0.392 5.608 25 C -0.304 4.304 26 C -0.164 4.164 27 C -0.052 4.052 28 N -0.137 5.137 29 H 0.269 0.731 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.240 0.760 41 H 0.172 0.828 42 H 0.224 0.776 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.739 -14.767 -12.145 26.772 hybrid contribution 1.207 0.264 2.144 2.475 sum -17.532 -14.503 -10.001 24.854 Atomic orbital electron populations 1.21701 0.92471 1.02388 1.02652 1.21892 0.97111 0.99962 0.93892 0.90121 1.21263 0.81621 0.97894 0.96728 1.44460 1.02361 1.71989 1.15129 1.18883 0.97608 1.12988 1.07789 0.92312 1.25820 0.96636 1.01055 0.99156 1.69964 1.04691 1.38426 1.47009 0.86014 0.77773 0.83127 0.76048 1.21769 1.24138 1.18003 1.21208 0.96447 0.95093 0.86764 1.22305 0.96633 1.01652 0.97503 1.20843 0.92560 0.80820 0.99427 0.89267 1.45930 1.66921 1.14306 1.08350 1.17073 0.77157 0.83960 0.84133 1.90836 1.52302 1.69242 1.31457 1.20132 1.12174 0.92845 0.86928 1.20528 1.02491 0.90050 0.98338 1.22951 1.16004 1.01042 0.97048 1.83901 1.68701 1.00808 1.07342 1.25721 1.05879 1.04233 0.94585 1.19212 1.05328 0.89173 1.02646 1.18833 1.05815 0.88053 0.92534 1.41934 1.54150 1.09184 1.08470 0.73075 0.92166 0.91290 0.91980 0.94232 0.91664 0.93049 0.94024 0.95281 0.91021 0.92092 0.76017 0.82844 0.77569 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.05 71.98 0.65 -2.00 16 2 C -0.11 -2.89 2.69 -10.57 -0.03 -2.92 16 3 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.15 4.87 5.53 86.51 0.48 5.35 16 5 N -0.62 -26.69 2.77 -698.26 -1.94 -28.62 16 6 C -0.24 -13.15 10.04 84.03 0.84 -12.30 16 7 H 0.06 3.45 8.05 -2.91 -0.02 3.43 16 8 C -0.03 -1.82 5.23 84.86 0.44 -1.37 16 9 N -0.95 -59.29 13.97 21.65 0.30 -58.99 16 10 Si 0.94 46.23 24.35 68.60 1.67 47.91 16 11 H -0.29 -14.14 6.70 99.48 0.67 -13.47 16 12 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 13 H -0.26 -11.63 6.49 99.48 0.65 -10.99 16 14 C 0.13 5.38 3.94 86.36 0.34 5.72 16 15 C -0.14 -4.92 5.77 30.67 0.18 -4.74 16 16 C 0.17 4.79 2.21 45.02 0.10 4.89 16 17 H 0.09 2.55 7.57 -2.39 -0.02 2.53 16 18 N -0.70 -18.22 3.60 -446.57 -1.61 -19.83 16 19 C 0.59 16.93 7.74 86.38 0.67 17.60 16 20 O -0.56 -19.61 16.52 -4.46 -0.07 -19.68 16 21 C -0.01 -0.16 7.01 40.14 0.28 0.12 16 22 C -0.08 -2.13 10.60 22.68 0.24 -1.89 16 23 C -0.25 -5.71 7.26 22.86 0.17 -5.55 16 24 S 0.13 2.21 23.31 -56.49 -1.32 0.89 16 25 C -0.17 -2.04 11.13 66.64 0.74 -1.30 16 26 C -0.13 -1.92 10.16 21.49 0.22 -1.70 16 27 C 0.07 1.39 7.67 38.40 0.29 1.69 16 28 N -0.53 -10.96 6.14 -177.14 -1.09 -12.04 16 29 H 0.43 6.72 8.14 -92.71 -0.75 5.96 16 30 H 0.06 1.07 7.54 -2.39 -0.02 1.05 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.12 6.63 -2.39 -0.02 1.10 16 34 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 35 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.04 1.98 4.49 -2.39 -0.01 1.97 16 37 H 0.03 1.17 6.60 -2.39 -0.02 1.16 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.40 9.05 5.80 -92.71 -0.54 8.51 16 41 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 42 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 43 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -71.18 352.95 1.24 -69.95 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.33 Total: 18.83 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 5.62 Total: 1.60 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -4.33 Total: -119.48 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.07 Total: -19.68 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.91 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.32 Total: 0.89 kcal Total: -71.18 1.24 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943988814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.797 kcal (2) G-P(sol) polarization free energy of solvation -71.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds