Wall clock time and date at job start Tue Mar 31 2020 18:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49716 * 2 1 4 4 C 1.53191 * 109.49800 * 239.93021 * 2 1 3 5 5 N 1.46932 * 108.77505 * 185.37939 * 4 2 1 6 6 C 1.36930 * 120.63298 * 233.58711 * 5 4 2 7 7 H 1.07996 * 120.00508 * 152.60559 * 6 5 4 8 8 C 1.38815 * 119.99850 * 332.61084 * 6 5 4 9 9 N 1.31625 * 119.99979 * 159.30372 * 8 6 5 10 10 Si 1.86799 * 120.00017 * 339.30605 * 8 6 5 11 11 H 1.48504 * 109.47203 * 92.97710 * 10 8 6 12 12 H 1.48504 * 109.47098 * 212.97476 * 10 8 6 13 13 H 1.48494 * 109.47032 * 332.97631 * 10 8 6 14 14 C 1.46931 * 118.73657 * 53.60989 * 5 4 2 15 15 C 1.53197 * 108.77692 * 306.38906 * 14 5 4 16 16 C 1.53037 * 109.30811 * 54.63591 * 15 14 5 17 17 H 1.08995 * 109.46570 * 58.65958 * 16 15 14 18 18 N 1.46511 * 109.45781 * 178.61484 * 16 15 14 19 19 C 1.34773 * 119.99928 * 275.07050 * 18 16 15 20 20 O 1.21740 * 119.99935 * 359.97438 * 19 18 16 21 21 C 1.46405 * 120.00061 * 179.97438 * 19 18 16 22 22 C 1.35778 * 124.95964 * 179.71796 * 21 19 18 23 23 C 1.38882 * 115.18575 * 179.78474 * 22 21 19 24 24 N 1.39740 * 139.91512 * 180.12587 * 23 22 21 25 25 H 0.97000 * 125.63378 * 0.33090 * 24 23 22 26 26 C 1.36212 * 108.73176 * 180.36060 * 24 23 22 27 27 C 1.34502 * 109.30155 * 359.97438 * 26 24 23 28 28 C 1.38239 * 113.38717 * 0.49986 * 23 22 21 29 29 S 1.75619 * 124.96045 * 0.02562 * 21 19 18 30 30 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47260 * 300.00447 * 1 2 3 32 32 H 1.08995 * 109.47048 * 60.00300 * 1 2 3 33 33 H 1.08999 * 109.58469 * 305.16425 * 4 2 1 34 34 H 1.09003 * 109.58611 * 65.45252 * 4 2 1 35 35 H 0.96995 * 119.99620 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58801 * 66.17845 * 14 5 4 37 37 H 1.08999 * 109.58335 * 186.60156 * 14 5 4 38 38 H 1.08992 * 109.49488 * 174.58504 * 15 14 5 39 39 H 1.09000 * 109.49675 * 294.65660 * 15 14 5 40 40 H 0.97002 * 120.00091 * 95.06732 * 18 16 15 41 41 H 1.08002 * 122.40980 * 359.97438 * 22 21 19 42 42 H 1.08005 * 125.34919 * 179.97438 * 26 24 23 43 43 H 1.07996 * 126.08251 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2932 -0.3780 -2.1951 7 1 5.2999 -0.0423 -1.9947 8 6 3.7984 -0.3529 -3.4918 9 7 4.3557 0.4270 -4.3939 10 14 2.3417 -1.4260 -3.9566 11 1 1.0849 -0.6518 -3.7945 12 1 2.4773 -1.8593 -5.3706 13 1 2.3050 -2.6199 -3.0744 14 6 4.1060 -1.4255 0.0301 15 6 3.5715 -0.6940 1.2656 16 6 2.0415 -0.7229 1.2482 17 1 1.6979 -1.7571 1.2353 18 7 1.5272 -0.0529 2.4454 19 6 1.3998 -0.7383 3.5988 20 8 1.7117 -1.9141 3.6459 21 6 0.8863 -0.0687 4.7953 22 6 0.7122 -0.6615 6.0043 23 6 0.2157 0.1666 7.0026 24 7 -0.1409 0.1181 8.3529 25 1 -0.0822 -0.6628 8.9252 26 6 -0.5852 1.3485 8.7324 27 6 -0.5280 2.1856 7.6811 28 6 -0.0243 1.4589 6.5745 29 16 0.3985 1.6165 4.8742 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6057 -1.7216 -1.2980 34 1 1.7611 -0.1591 -2.1391 35 1 4.0102 0.4441 -5.3001 36 1 3.8388 -2.4807 0.0862 37 1 5.1902 -1.3229 -0.0147 38 1 3.9345 -1.1886 2.1664 39 1 3.9165 0.3399 1.2538 40 1 1.2784 0.8839 2.4078 41 1 0.9461 -1.7015 6.1782 42 1 -0.9293 1.6108 9.7220 43 1 -0.8159 3.2265 7.6805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944447420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:40 Heat of formation + Delta-G solvation = 58.096779 kcal Electronic energy + Delta-G solvation = -25935.182822 eV Core-core repulsion = 22301.312703 eV Total energy + Delta-G solvation = -3633.870119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.49908 -39.92445 -37.94459 -35.31293 -34.63993 -32.50603 -31.95280 -31.26254 -30.27001 -28.41138 -26.23628 -25.33985 -23.89889 -22.61908 -21.75604 -21.01896 -20.82187 -20.08077 -19.33418 -18.68356 -17.16017 -16.57466 -16.19657 -15.73339 -15.26374 -15.01439 -14.68267 -14.58121 -14.28344 -14.04931 -13.80851 -13.65786 -13.25869 -13.22673 -13.04332 -12.58921 -12.36018 -12.24704 -11.95880 -11.71300 -11.62361 -11.44125 -11.15891 -10.88257 -10.65204 -10.49162 -10.28712 -10.14526 -9.99131 -9.93041 -9.69706 -9.45540 -8.86572 -8.61418 -8.40610 -7.94474 -6.97710 -5.93930 -3.29629 0.31722 1.19062 1.73244 2.13361 2.32634 2.62821 3.20247 3.24566 3.32578 3.50236 3.53700 4.52821 4.54103 4.56300 4.69317 4.92154 4.97067 5.07484 5.15286 5.31120 5.36301 5.47151 5.47524 5.62740 5.70228 5.73807 5.90516 5.92429 6.05137 6.13043 6.14924 6.16536 6.30747 6.39195 6.40252 6.42165 6.62594 6.65703 6.71584 6.74455 6.94693 7.03787 7.53943 7.97086 8.20085 8.34193 8.94925 9.72984 10.10671 11.22017 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.002581 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.925272 B =10846.476914 C =11048.276162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 H 0.079 0.921 4 C 0.136 3.864 5 N -0.606 5.606 6 C -0.259 4.259 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.151 3.849 15 C -0.143 4.143 16 C 0.158 3.842 17 H 0.086 0.914 18 N -0.714 5.714 19 C 0.589 3.411 20 O -0.531 6.531 21 C -0.231 4.231 22 C -0.034 4.034 23 C 0.024 3.976 24 N -0.557 5.557 25 H 0.420 0.580 26 C 0.057 3.943 27 C -0.172 4.172 28 C -0.188 4.188 29 S 0.165 5.835 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.395 0.605 41 H 0.149 0.851 42 H 0.178 0.822 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 2.935 26.571 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.137 4.137 3 H 0.097 0.903 4 C 0.009 3.991 5 N -0.329 5.329 6 C -0.387 4.387 7 H 0.104 0.896 8 C -0.176 4.176 9 N -0.551 5.551 10 Si 0.710 3.290 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.183 4.183 16 C 0.055 3.945 17 H 0.104 0.896 18 N -0.364 5.364 19 C 0.375 3.625 20 O -0.410 6.410 21 C -0.352 4.352 22 C -0.070 4.070 23 C -0.090 4.090 24 N -0.158 5.158 25 H 0.257 0.743 26 C -0.077 4.077 27 C -0.201 4.201 28 C -0.310 4.310 29 S 0.427 5.573 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.229 0.771 41 H 0.167 0.833 42 H 0.195 0.805 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.911 3.174 25.388 28.222 hybrid contribution -0.948 -1.496 1.039 2.053 sum -12.858 1.678 26.426 29.436 Atomic orbital electron populations 1.21807 0.95526 1.01751 1.01318 1.21996 0.94926 1.01103 0.95664 0.90265 1.21374 0.84912 0.97259 0.95515 1.44409 1.00625 1.70065 1.17847 1.18926 0.98589 1.36035 0.85126 0.89613 1.25285 0.97996 0.98647 0.95657 1.69840 1.43291 1.37835 1.04128 0.86993 0.82599 0.82582 0.76825 1.21542 1.23141 1.19458 1.20904 0.97370 0.94168 0.85109 1.22411 0.94368 1.01958 0.99582 1.21079 0.94145 0.97163 0.82152 0.89587 1.46110 1.65813 1.14186 1.10253 1.16826 0.77868 0.86056 0.81775 1.90840 1.50506 1.15268 1.84390 1.23842 1.14416 0.98604 0.98302 1.19238 0.98363 1.00348 0.89082 1.18003 1.10059 0.94939 0.85963 1.41906 1.54213 1.11799 1.07918 0.74268 1.21873 1.02202 0.83661 0.99971 1.20145 1.09807 1.00094 0.90077 1.23202 1.11115 0.97828 0.98902 1.83783 1.64908 1.06324 1.02236 0.92833 0.93108 0.92357 0.95446 0.90457 0.92781 0.95637 0.91504 0.92070 0.91681 0.77056 0.83329 0.80492 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.03 37.16 0.34 -1.79 16 2 C -0.12 -1.99 2.46 -90.50 -0.22 -2.22 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.14 2.93 3.48 -3.71 -0.01 2.91 16 5 N -0.61 -14.39 2.77 -172.31 -0.48 -14.86 16 6 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 7 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 8 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 9 N -0.91 -27.76 13.97 55.49 0.78 -26.99 16 10 Si 0.88 22.35 24.35 -169.99 -4.14 18.21 16 11 H -0.29 -6.98 6.62 56.52 0.37 -6.61 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.27 -6.78 6.64 56.52 0.38 -6.40 16 14 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 15 C -0.14 -2.50 5.65 -26.61 -0.15 -2.65 16 16 C 0.16 2.61 1.88 -67.88 -0.13 2.48 16 17 H 0.09 1.56 7.57 -51.93 -0.39 1.17 16 18 N -0.71 -10.09 4.36 -55.15 -0.24 -10.33 16 19 C 0.59 8.84 7.74 -12.98 -0.10 8.74 16 20 O -0.53 -9.64 16.43 5.15 0.08 -9.56 16 21 C -0.23 -2.91 6.38 -37.18 -0.24 -3.14 16 22 C -0.03 -0.39 9.88 -40.22 -0.40 -0.79 16 23 C 0.02 0.24 7.67 -84.01 -0.64 -0.40 16 24 N -0.56 -3.70 6.21 -10.90 -0.07 -3.77 16 25 H 0.42 1.50 8.96 -40.82 -0.37 1.13 16 26 C 0.06 0.32 11.85 -16.93 -0.20 0.12 16 27 C -0.17 -1.35 10.85 -39.60 -0.43 -1.78 16 28 C -0.19 -1.95 7.31 -38.28 -0.28 -2.23 16 29 S 0.16 1.73 22.29 -107.50 -2.40 -0.67 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.63 7.36 -51.92 -0.38 0.25 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 34 H 0.08 1.82 4.50 -51.93 -0.23 1.58 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.40 4.80 7.37 -40.82 -0.30 4.50 16 41 H 0.15 1.60 8.00 -52.49 -0.42 1.18 16 42 H 0.18 0.29 8.06 -52.48 -0.42 -0.14 16 43 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -34.02 356.82 -9.69 -43.70 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.87 Total: 3.38 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.73 Total: -4.49 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.01 Total: -55.95 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.56 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.21 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.02 -9.69 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944447420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.801 kcal (2) G-P(sol) polarization free energy of solvation -34.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds