Wall clock time and date at job start Tue Mar 31 2020 18:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49716 * 2 1 4 4 C 1.53191 * 109.49800 * 239.93021 * 2 1 3 5 5 N 1.46932 * 108.77505 * 185.37939 * 4 2 1 6 6 C 1.36930 * 120.63298 * 233.58711 * 5 4 2 7 7 H 1.07996 * 120.00508 * 152.60559 * 6 5 4 8 8 C 1.38815 * 119.99850 * 332.61084 * 6 5 4 9 9 N 1.31625 * 119.99979 * 159.30372 * 8 6 5 10 10 Si 1.86799 * 120.00017 * 339.30605 * 8 6 5 11 11 H 1.48504 * 109.47203 * 92.97710 * 10 8 6 12 12 H 1.48504 * 109.47098 * 212.97476 * 10 8 6 13 13 H 1.48494 * 109.47032 * 332.97631 * 10 8 6 14 14 C 1.46931 * 118.73657 * 53.60989 * 5 4 2 15 15 C 1.53197 * 108.77692 * 306.38906 * 14 5 4 16 16 C 1.53037 * 109.30811 * 54.63591 * 15 14 5 17 17 H 1.08995 * 109.46570 * 58.65958 * 16 15 14 18 18 N 1.46511 * 109.45781 * 178.61484 * 16 15 14 19 19 C 1.34773 * 119.99928 * 275.07050 * 18 16 15 20 20 O 1.21740 * 119.99935 * 359.97438 * 19 18 16 21 21 C 1.46405 * 120.00061 * 179.97438 * 19 18 16 22 22 C 1.35778 * 124.95964 * 179.71796 * 21 19 18 23 23 C 1.38882 * 115.18575 * 179.78474 * 22 21 19 24 24 N 1.39740 * 139.91512 * 180.12587 * 23 22 21 25 25 H 0.97000 * 125.63378 * 0.33090 * 24 23 22 26 26 C 1.36212 * 108.73176 * 180.36060 * 24 23 22 27 27 C 1.34502 * 109.30155 * 359.97438 * 26 24 23 28 28 C 1.38239 * 113.38717 * 0.49986 * 23 22 21 29 29 S 1.75619 * 124.96045 * 0.02562 * 21 19 18 30 30 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47260 * 300.00447 * 1 2 3 32 32 H 1.08995 * 109.47048 * 60.00300 * 1 2 3 33 33 H 1.08999 * 109.58469 * 305.16425 * 4 2 1 34 34 H 1.09003 * 109.58611 * 65.45252 * 4 2 1 35 35 H 0.96995 * 119.99620 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.58801 * 66.17845 * 14 5 4 37 37 H 1.08999 * 109.58335 * 186.60156 * 14 5 4 38 38 H 1.08992 * 109.49488 * 174.58504 * 15 14 5 39 39 H 1.09000 * 109.49675 * 294.65660 * 15 14 5 40 40 H 0.97002 * 120.00091 * 95.06732 * 18 16 15 41 41 H 1.08002 * 122.40980 * 359.97438 * 22 21 19 42 42 H 1.08005 * 125.34919 * 179.97438 * 26 24 23 43 43 H 1.07996 * 126.08251 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2497 5 7 3.5047 -0.8282 -1.1701 6 6 4.2932 -0.3780 -2.1951 7 1 5.2999 -0.0423 -1.9947 8 6 3.7984 -0.3529 -3.4918 9 7 4.3557 0.4270 -4.3939 10 14 2.3417 -1.4260 -3.9566 11 1 1.0849 -0.6518 -3.7945 12 1 2.4773 -1.8593 -5.3706 13 1 2.3050 -2.6199 -3.0744 14 6 4.1060 -1.4255 0.0301 15 6 3.5715 -0.6940 1.2656 16 6 2.0415 -0.7229 1.2482 17 1 1.6979 -1.7571 1.2353 18 7 1.5272 -0.0529 2.4454 19 6 1.3998 -0.7383 3.5988 20 8 1.7117 -1.9141 3.6459 21 6 0.8863 -0.0687 4.7953 22 6 0.7122 -0.6615 6.0043 23 6 0.2157 0.1666 7.0026 24 7 -0.1409 0.1181 8.3529 25 1 -0.0822 -0.6628 8.9252 26 6 -0.5852 1.3485 8.7324 27 6 -0.5280 2.1856 7.6811 28 6 -0.0243 1.4589 6.5745 29 16 0.3985 1.6165 4.8742 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6057 -1.7216 -1.2980 34 1 1.7611 -0.1591 -2.1391 35 1 4.0102 0.4441 -5.3001 36 1 3.8388 -2.4807 0.0862 37 1 5.1902 -1.3229 -0.0147 38 1 3.9345 -1.1886 2.1664 39 1 3.9165 0.3399 1.2538 40 1 1.2784 0.8839 2.4078 41 1 0.9461 -1.7015 6.1782 42 1 -0.9293 1.6108 9.7220 43 1 -0.8159 3.2265 7.6805 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944447420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:39 Heat of formation + Delta-G solvation = 35.028270 kcal Electronic energy + Delta-G solvation = -25936.183148 eV Core-core repulsion = 22301.312703 eV Total energy + Delta-G solvation = -3634.870445 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12149 -41.17964 -39.41743 -36.39445 -35.94863 -34.16543 -33.62727 -32.03213 -31.77430 -29.29576 -27.69000 -26.92173 -25.13817 -23.99983 -22.63698 -22.42027 -21.64177 -21.41186 -20.57443 -19.42313 -18.89415 -17.76600 -17.60632 -16.82036 -16.47143 -16.26574 -16.04474 -15.60782 -15.48189 -15.19207 -15.09015 -14.90754 -14.70372 -14.38281 -14.35626 -14.07281 -13.66390 -13.47547 -13.23807 -13.01026 -12.96484 -12.57355 -12.51969 -12.36998 -12.07157 -11.97600 -11.94866 -11.74703 -11.55055 -11.34444 -11.19507 -10.69302 -10.66563 -10.15007 -9.13557 -8.97261 -8.62074 -8.16314 -5.48706 -0.50646 0.42484 0.95804 1.29401 1.38272 1.42247 1.51021 1.72925 1.89077 2.15539 2.29210 2.41388 3.03989 3.30975 3.58845 3.73877 3.91604 3.96217 4.01991 4.17005 4.22777 4.25787 4.42491 4.51440 4.55955 4.58617 4.67780 4.72022 4.79835 4.85760 4.94348 4.97437 4.99434 5.04977 5.06878 5.18071 5.27260 5.37596 5.45845 5.56296 5.79841 5.86434 6.12840 6.41082 6.61201 6.89751 7.06847 7.60584 8.01470 9.03399 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.030103 B = 0.002581 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.925272 B =10846.476914 C =11048.276162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.077 0.923 4 C 0.130 3.870 5 N -0.619 5.619 6 C -0.248 4.248 7 H 0.054 0.946 8 C -0.032 4.032 9 N -0.954 5.954 10 Si 0.941 3.059 11 H -0.268 1.268 12 H -0.311 1.311 13 H -0.265 1.265 14 C 0.148 3.852 15 C -0.131 4.131 16 C 0.168 3.832 17 H 0.074 0.926 18 N -0.705 5.705 19 C 0.593 3.407 20 O -0.571 6.571 21 C -0.267 4.267 22 C -0.024 4.024 23 C -0.006 4.006 24 N -0.547 5.547 25 H 0.435 0.565 26 C 0.090 3.910 27 C -0.200 4.200 28 C -0.197 4.197 29 S 0.174 5.826 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.262 0.738 36 H 0.031 0.969 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.407 0.593 41 H 0.147 0.853 42 H 0.226 0.774 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 3.429 30.053 33.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.096 0.904 4 C 0.005 3.995 5 N -0.343 5.343 6 C -0.378 4.378 7 H 0.072 0.928 8 C -0.227 4.227 9 N -0.600 5.600 10 Si 0.770 3.230 11 H -0.194 1.194 12 H -0.240 1.240 13 H -0.190 1.190 14 C 0.022 3.978 15 C -0.171 4.171 16 C 0.063 3.937 17 H 0.092 0.908 18 N -0.355 5.355 19 C 0.380 3.620 20 O -0.452 6.452 21 C -0.387 4.387 22 C -0.060 4.060 23 C -0.119 4.119 24 N -0.149 5.149 25 H 0.275 0.725 26 C -0.045 4.045 27 C -0.229 4.229 28 C -0.320 4.320 29 S 0.437 5.563 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.243 0.757 41 H 0.165 0.835 42 H 0.242 0.758 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.585 3.662 28.914 32.591 hybrid contribution -0.108 -1.588 0.224 1.608 sum -14.693 2.074 29.138 32.698 Atomic orbital electron populations 1.21783 0.93021 1.02380 1.02758 1.21804 0.96924 1.00190 0.93724 0.90434 1.21422 0.83527 0.97611 0.96967 1.44516 1.01498 1.70567 1.17732 1.18854 0.97863 1.34659 0.86384 0.92829 1.25869 1.01289 0.99879 0.95659 1.69960 1.45752 1.39793 1.04531 0.85995 0.80369 0.80895 0.75765 1.19436 1.23977 1.19004 1.21010 0.97182 0.94618 0.84951 1.22242 0.95268 1.01392 0.98199 1.20771 0.93248 0.96709 0.82927 0.90776 1.45860 1.65597 1.14609 1.09412 1.17095 0.76979 0.85578 0.82317 1.90810 1.52376 1.16942 1.85074 1.23523 1.17399 1.00038 0.97725 1.19349 0.96988 1.00425 0.89273 1.17963 1.11738 0.94703 0.87461 1.42049 1.53087 1.12985 1.06777 0.72479 1.22690 0.98445 0.82243 1.01141 1.20565 1.11021 1.01467 0.89846 1.23620 1.10727 0.98552 0.99110 1.83580 1.64979 1.04663 1.03047 0.92625 0.90730 0.91908 0.95114 0.92305 0.92895 0.95099 0.92059 0.91428 0.91825 0.75715 0.83496 0.75751 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.03 71.98 0.65 -3.14 16 2 C -0.11 -3.50 2.46 -10.72 -0.03 -3.53 16 3 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 4 C 0.13 5.51 3.48 86.36 0.30 5.81 16 5 N -0.62 -29.60 2.77 -699.07 -1.94 -31.54 16 6 C -0.25 -14.20 10.03 84.04 0.84 -13.35 16 7 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 8 C -0.03 -1.88 5.23 84.86 0.44 -1.44 16 9 N -0.95 -60.11 13.97 21.65 0.30 -59.80 16 10 Si 0.94 46.76 24.35 68.60 1.67 48.43 16 11 H -0.27 -12.35 6.62 99.48 0.66 -11.69 16 12 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 13 H -0.27 -12.85 6.64 99.48 0.66 -12.19 16 14 C 0.15 6.03 6.52 86.36 0.56 6.59 16 15 C -0.13 -4.54 5.65 30.67 0.17 -4.37 16 16 C 0.17 5.41 1.88 45.02 0.08 5.49 16 17 H 0.07 2.63 7.57 -2.39 -0.02 2.61 16 18 N -0.70 -19.22 4.36 -446.59 -1.95 -21.17 16 19 C 0.59 17.53 7.74 86.37 0.67 18.20 16 20 O -0.57 -20.77 16.43 -4.48 -0.07 -20.85 16 21 C -0.27 -6.55 6.38 23.83 0.15 -6.40 16 22 C -0.02 -0.53 9.88 21.85 0.22 -0.31 16 23 C -0.01 -0.10 7.67 38.03 0.29 0.19 16 24 N -0.55 -5.36 6.21 -188.39 -1.17 -6.53 16 25 H 0.43 1.57 8.96 -92.71 -0.83 0.74 16 26 C 0.09 0.60 11.85 83.16 0.99 1.58 16 27 C -0.20 -2.45 10.85 22.26 0.24 -2.21 16 28 C -0.20 -3.66 7.31 23.11 0.17 -3.49 16 29 S 0.17 3.43 22.29 -56.49 -1.26 2.17 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.65 7.36 -2.38 -0.02 1.63 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.29 7.08 -2.39 -0.02 1.28 16 34 H 0.06 2.71 4.50 -2.39 -0.01 2.70 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 38 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.41 9.30 7.37 -92.71 -0.68 8.62 16 41 H 0.15 3.15 8.00 -2.91 -0.02 3.12 16 42 H 0.23 -0.73 8.06 -2.91 -0.02 -0.75 16 43 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -75.99 356.82 0.79 -75.20 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.55 Total: 14.45 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.76 Total: -0.37 kcal Atomic # 7 Polarization: -114.28 SS G_CDS: -4.75 Total: -119.04 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.85 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.67 Total: 48.43 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.26 Total: 2.17 kcal Total: -75.99 0.79 -75.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944447420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.224 kcal (2) G-P(sol) polarization free energy of solvation -75.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds