Wall clock time and date at job start Tue Mar 31 2020 18:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49573 * 2 1 4 4 C 1.53197 * 109.49471 * 239.93440 * 2 1 3 5 5 N 1.46925 * 108.77310 * 185.37869 * 4 2 1 6 6 C 1.36940 * 120.62981 * 233.58653 * 5 4 2 7 7 H 1.08000 * 120.00137 * 27.69042 * 6 5 4 8 8 C 1.38812 * 119.99979 * 207.68422 * 6 5 4 9 9 N 1.31621 * 119.99877 * 17.37697 * 8 6 5 10 10 Si 1.86800 * 119.99995 * 197.36845 * 8 6 5 11 11 H 1.48497 * 109.47280 * 60.00370 * 10 8 6 12 12 H 1.48508 * 109.47136 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47122 * 300.00385 * 10 8 6 14 14 C 1.46922 * 118.73955 * 53.61486 * 5 4 2 15 15 C 1.53197 * 108.77520 * 306.38547 * 14 5 4 16 16 C 1.53038 * 109.52639 * 120.08327 * 2 1 3 17 17 H 1.08994 * 109.45991 * 301.35204 * 16 2 1 18 18 N 1.46508 * 109.46021 * 61.31068 * 16 2 1 19 19 C 1.34777 * 119.99849 * 204.99926 * 18 16 2 20 20 O 1.21728 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.46414 * 119.99616 * 179.97438 * 19 18 16 22 22 C 1.35783 * 124.95550 * 180.02562 * 21 19 18 23 23 C 1.38870 * 115.18344 * 179.97438 * 22 21 19 24 24 N 1.39746 * 139.91383 * 179.97438 * 23 22 21 25 25 H 0.96999 * 125.62880 * 0.02562 * 24 23 22 26 26 C 1.36210 * 108.73379 * 180.02562 * 24 23 22 27 27 C 1.34509 * 109.29692 * 0.02562 * 26 24 23 28 28 C 1.38240 * 113.39248 * 0.02562 * 23 22 21 29 29 S 1.75616 * 124.96322 * 359.70112 * 21 19 18 30 30 H 1.09004 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47142 * 299.99418 * 1 2 3 32 32 H 1.08992 * 109.47506 * 60.00114 * 1 2 3 33 33 H 1.08994 * 109.58863 * 305.16611 * 4 2 1 34 34 H 1.09003 * 109.58567 * 65.59774 * 4 2 1 35 35 H 0.97001 * 119.99724 * 180.02562 * 9 8 6 36 36 H 1.08993 * 109.58801 * 66.17570 * 14 5 4 37 37 H 1.09002 * 109.58458 * 186.60239 * 14 5 4 38 38 H 1.08995 * 109.49971 * 174.58164 * 15 14 5 39 39 H 1.08994 * 109.49869 * 294.69054 * 15 14 5 40 40 H 0.96996 * 119.99693 * 25.00062 * 18 16 2 41 41 H 1.07993 * 122.40465 * 0.02562 * 22 21 19 42 42 H 1.07999 * 125.34938 * 180.02562 * 26 24 23 43 43 H 1.08004 * 126.07477 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5046 -0.8281 -1.1703 6 6 4.2930 -0.3778 -2.1954 7 1 3.9456 0.4219 -2.8327 8 6 5.5389 -0.9491 -2.4153 9 7 5.8284 -2.1198 -1.8878 10 14 6.8044 -0.0566 -3.4599 11 1 7.1164 1.2580 -2.8440 12 1 8.0430 -0.8720 -3.5413 13 1 6.2599 0.1533 -4.8254 14 6 4.1059 -1.4256 0.0298 15 6 3.5716 -0.6942 1.2653 16 6 2.0415 -0.7230 1.2481 17 1 1.6589 -0.2247 2.1388 18 7 1.5796 -2.1133 1.2305 19 6 1.4522 -2.7956 2.3857 20 8 1.7204 -2.2567 3.4437 21 6 0.9901 -4.1848 2.3682 22 6 0.8254 -4.9639 3.4680 23 6 0.3758 -6.2535 3.2167 24 7 0.0464 -7.4241 3.9052 25 1 0.0884 -7.5450 4.8667 26 6 -0.3435 -8.3673 3.0031 27 6 -0.2774 -7.8504 1.7630 28 6 0.1756 -6.5130 1.8737 29 16 0.5603 -5.0842 0.9223 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6057 -1.7215 -1.2982 34 1 1.7632 -0.1576 -2.1390 35 1 6.6991 -2.5188 -2.0412 36 1 3.8387 -2.4808 0.0857 37 1 5.1902 -1.3229 -0.0151 38 1 3.9346 -1.1889 2.1662 39 1 3.9161 0.3398 1.2533 40 1 1.3656 -2.5425 0.3875 41 1 1.0286 -4.6060 4.4664 42 1 -0.6564 -9.3721 3.2455 43 1 -0.5262 -8.3638 0.8460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944447421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:44 Heat of formation + Delta-G solvation = 35.082989 kcal Electronic energy + Delta-G solvation = -26420.165215 eV Core-core repulsion = 22785.297143 eV Total energy + Delta-G solvation = -3634.868072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.12052 -41.24165 -39.20283 -36.17396 -35.87330 -34.02493 -32.89139 -31.97761 -31.74838 -29.21485 -27.39905 -27.03192 -25.13537 -23.74235 -22.90355 -22.59678 -21.70123 -20.84247 -20.19366 -19.35589 -18.68335 -17.91471 -16.90916 -16.71252 -16.48777 -16.31997 -15.76968 -15.65564 -15.40837 -15.34795 -15.01297 -14.77005 -14.57999 -14.37364 -14.18958 -13.65971 -13.54944 -13.16099 -12.96753 -12.95456 -12.70082 -12.53613 -12.51124 -12.36608 -12.22204 -11.95387 -11.92508 -11.67887 -11.49257 -11.19649 -11.09660 -10.66681 -10.51200 -10.09113 -9.13562 -8.66684 -8.63053 -7.84973 -5.30313 -0.49311 0.42774 0.98225 1.39150 1.47892 1.50739 1.56972 1.72953 1.94561 2.18043 2.34817 2.52836 3.29798 3.63436 3.70850 3.82824 3.96822 4.06134 4.11489 4.17058 4.23951 4.40342 4.55966 4.58581 4.65495 4.73492 4.76518 4.81649 4.96964 4.99464 5.01667 5.06655 5.09467 5.16027 5.29843 5.42107 5.47903 5.55108 5.55686 5.65917 5.73709 5.79365 6.39741 6.43844 6.62985 7.08528 7.15675 7.86974 8.39015 9.20805 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003309 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.422961 B = 8458.677849 C = 9241.607155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 H 0.084 0.916 4 C 0.148 3.852 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.070 0.930 8 C -0.050 4.050 9 N -0.933 5.933 10 Si 0.965 3.035 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.274 1.274 14 C 0.188 3.812 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.083 0.917 18 N -0.701 5.701 19 C 0.591 3.409 20 O -0.572 6.572 21 C -0.267 4.267 22 C -0.022 4.022 23 C -0.004 4.004 24 N -0.544 5.544 25 H 0.436 0.564 26 C 0.094 3.906 27 C -0.202 4.202 28 C -0.196 4.196 29 S 0.155 5.845 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.015 0.985 34 H 0.062 0.938 35 H 0.248 0.752 36 H -0.004 1.004 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.067 0.933 40 H 0.401 0.599 41 H 0.152 0.848 42 H 0.230 0.770 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.508 -11.044 10.484 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.329 5.329 6 C -0.392 4.392 7 H 0.088 0.912 8 C -0.245 4.245 9 N -0.579 5.579 10 Si 0.794 3.206 11 H -0.206 1.206 12 H -0.224 1.224 13 H -0.199 1.199 14 C 0.062 3.938 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.101 0.899 18 N -0.351 5.351 19 C 0.378 3.622 20 O -0.454 6.454 21 C -0.387 4.387 22 C -0.059 4.059 23 C -0.117 4.117 24 N -0.147 5.147 25 H 0.277 0.723 26 C -0.042 4.042 27 C -0.231 4.231 28 C -0.319 4.319 29 S 0.418 5.582 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.169 0.831 42 H 0.246 0.754 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.174 -10.333 9.781 21.541 hybrid contribution 1.261 -0.245 0.905 1.572 sum -14.913 -10.578 10.686 21.177 Atomic orbital electron populations 1.21710 0.92777 1.02062 1.02695 1.21822 0.96900 0.99916 0.94094 0.89746 1.21088 0.83583 0.96737 0.96303 1.44263 1.00970 1.71503 1.16175 1.19486 0.98822 1.12161 1.08730 0.91194 1.25774 1.01745 0.96016 1.01003 1.70196 1.21866 1.16064 1.49784 0.85374 0.78425 0.77808 0.79019 1.20627 1.22359 1.19921 1.20397 0.97203 0.92294 0.83916 1.22412 0.96248 1.01290 0.98456 1.20868 0.93147 0.80706 0.99087 0.89905 1.45919 1.66612 1.14296 1.08273 1.17076 0.76759 0.84404 0.83924 1.90757 1.53163 1.70108 1.31406 1.23587 1.18022 0.98760 0.98364 1.19328 0.97093 0.89836 0.99600 1.17937 1.12285 0.90596 0.90906 1.42003 1.54597 1.07935 1.10131 0.72347 1.22692 0.98681 0.95793 0.87002 1.20572 1.11736 0.91129 0.99678 1.23618 1.11102 1.01039 0.96190 1.83905 1.67193 1.01591 1.05502 0.92893 0.91825 0.90974 0.96679 0.91903 0.94293 0.98582 0.93255 0.93374 0.91420 0.76251 0.83088 0.75407 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.06 71.98 0.65 -2.73 16 2 C -0.11 -3.46 2.67 -10.72 -0.03 -3.49 16 3 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.15 5.86 5.50 86.36 0.48 6.34 16 5 N -0.61 -30.09 2.99 -699.10 -2.09 -32.19 16 6 C -0.26 -14.29 9.59 84.03 0.81 -13.48 16 7 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 8 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 9 N -0.93 -55.91 11.19 21.65 0.24 -55.67 16 10 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.19 9.40 5.05 86.36 0.44 9.83 16 15 C -0.14 -6.00 5.77 30.67 0.18 -5.82 16 16 C 0.17 5.90 2.21 45.02 0.10 6.00 16 17 H 0.08 2.88 7.57 -2.39 -0.02 2.87 16 18 N -0.70 -24.53 3.59 -446.60 -1.60 -26.14 16 19 C 0.59 21.40 7.74 86.37 0.67 22.07 16 20 O -0.57 -23.45 16.43 -4.44 -0.07 -23.52 16 21 C -0.27 -8.45 6.38 23.83 0.15 -8.30 16 22 C -0.02 -0.61 9.88 21.85 0.22 -0.39 16 23 C 0.00 -0.10 7.67 38.03 0.29 0.19 16 24 N -0.54 -7.41 6.21 -188.39 -1.17 -8.58 16 25 H 0.44 2.94 8.96 -92.71 -0.83 2.11 16 26 C 0.09 0.98 11.85 83.16 0.99 1.97 16 27 C -0.20 -3.50 10.85 22.25 0.24 -3.26 16 28 C -0.20 -4.85 7.31 23.11 0.17 -4.69 16 29 S 0.15 4.38 22.29 -56.49 -1.26 3.12 16 30 H 0.05 1.32 7.54 -2.39 -0.02 1.30 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.02 0.60 6.64 -2.39 -0.02 0.59 16 34 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 35 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.00 -0.21 7.74 -2.39 -0.02 -0.23 16 37 H 0.05 2.82 6.04 -2.39 -0.01 2.81 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.40 13.79 5.79 -92.71 -0.54 13.25 16 41 H 0.15 3.87 8.00 -2.91 -0.02 3.85 16 42 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -73.46 359.28 1.52 -71.95 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.31 Total: 21.94 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.76 Total: 1.86 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -4.63 Total: -122.58 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.07 Total: -23.52 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.26 Total: 3.12 kcal Total: -73.46 1.52 -71.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944447421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.029 kcal (2) G-P(sol) polarization free energy of solvation -73.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds