Wall clock time and date at job start Tue Mar 31 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.52048 * 2 1 4 4 C 1.53192 * 109.48972 * 120.08639 * 2 1 3 5 5 N 1.46926 * 108.76427 * 174.59975 * 4 2 1 6 6 C 1.36938 * 120.62599 * 126.36122 * 5 4 2 7 7 H 1.08001 * 120.00314 * 332.81467 * 6 5 4 8 8 C 1.38811 * 119.99705 * 152.80966 * 6 5 4 9 9 N 1.31622 * 119.99921 * 159.75496 * 8 6 5 10 10 Si 1.86800 * 120.00249 * 339.75649 * 8 6 5 11 11 H 1.48497 * 109.47309 * 94.89892 * 10 8 6 12 12 H 1.48495 * 109.47285 * 214.89873 * 10 8 6 13 13 H 1.48503 * 109.47038 * 334.89945 * 10 8 6 14 14 C 1.46920 * 118.74084 * 306.38625 * 5 4 2 15 15 C 1.53187 * 108.77846 * 53.60902 * 14 5 4 16 16 C 1.53038 * 109.49882 * 239.91991 * 2 1 3 17 17 H 1.09001 * 109.46312 * 298.68798 * 16 2 1 18 18 N 1.46500 * 109.45891 * 58.66027 * 16 2 1 19 19 C 1.34782 * 119.99645 * 205.02973 * 18 16 2 20 20 O 1.21729 * 120.00174 * 359.97438 * 19 18 16 21 21 C 1.46424 * 119.99642 * 180.02562 * 19 18 16 22 22 C 1.35774 * 124.95826 * 179.97438 * 21 19 18 23 23 C 1.38871 * 115.18565 * 180.02562 * 22 21 19 24 24 N 1.39750 * 139.91115 * 179.97438 * 23 22 21 25 25 H 0.96995 * 125.63284 * 359.77436 * 24 23 22 26 26 C 1.36217 * 108.72686 * 180.02562 * 24 23 22 27 27 C 1.34502 * 109.30107 * 359.97438 * 26 24 23 28 28 C 1.38239 * 113.39197 * 0.02562 * 23 22 21 29 29 S 1.75616 * 124.95992 * 0.02562 * 21 19 18 30 30 H 1.09000 * 109.47003 * 180.08300 * 1 2 3 31 31 H 1.09001 * 109.47148 * 300.07728 * 1 2 3 32 32 H 1.09003 * 109.47100 * 60.08187 * 1 2 3 33 33 H 1.09005 * 109.59894 * 54.81309 * 4 2 1 34 34 H 1.09000 * 109.58095 * 294.38100 * 4 2 1 35 35 H 0.96999 * 119.99879 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.58554 * 293.81766 * 14 5 4 37 37 H 1.09006 * 109.58472 * 173.39939 * 14 5 4 38 38 H 1.08997 * 109.50101 * 185.41431 * 15 14 5 39 39 H 1.08999 * 109.49878 * 65.31527 * 15 14 5 40 40 H 0.96996 * 120.00386 * 25.03049 * 18 16 2 41 41 H 1.08007 * 122.40511 * 0.03424 * 22 21 19 42 42 H 1.08008 * 125.34376 * 179.97438 * 26 24 23 43 43 H 1.07998 * 126.07320 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0411 -0.7240 1.2496 5 7 3.5044 -0.8289 1.1696 6 6 4.2932 -0.3782 2.1942 7 1 3.9427 0.4165 2.8362 8 6 5.5433 -0.9426 2.4078 9 7 6.4528 -0.2861 3.0963 10 14 5.9346 -2.6339 1.7180 11 1 6.6144 -2.4882 0.4058 12 1 6.8257 -3.3584 2.6593 13 1 4.6747 -3.3997 1.5404 14 6 4.1053 -1.4262 -0.0307 15 6 3.5709 -0.6946 -1.2659 16 6 2.0408 -0.7231 -1.2483 17 1 1.6970 -1.7573 -1.2352 18 7 1.5265 -0.0529 -2.4453 19 6 1.3979 -0.7385 -3.5986 20 8 1.7096 -1.9142 -3.6458 21 6 0.8844 -0.0685 -4.7950 22 6 0.7147 -0.6599 -6.0054 23 6 0.2134 0.1671 -7.0020 24 7 -0.1437 0.1187 -8.3523 25 1 -0.0825 -0.6615 -8.9254 26 6 -0.5865 1.3497 -8.7319 27 6 -0.5289 2.1866 -7.6806 28 6 -0.0244 1.4600 -6.5744 29 16 0.3992 1.6174 -4.8743 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6053 -1.7219 1.2979 34 1 1.7634 -0.1581 2.1388 35 1 7.3265 -0.6804 3.2453 36 1 3.8379 -2.4815 -0.0867 37 1 5.1897 -1.3239 0.0140 38 1 3.9336 -1.1891 -2.1670 39 1 3.9157 0.3393 -1.2539 40 1 1.2785 0.8840 -2.4078 41 1 0.9525 -1.6988 -6.1804 42 1 -0.9298 1.6123 -9.7218 43 1 -0.8150 3.2280 -7.6804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944447422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:49 Heat of formation + Delta-G solvation = 58.375260 kcal Electronic energy + Delta-G solvation = -25917.947060 eV Core-core repulsion = 22284.089017 eV Total energy + Delta-G solvation = -3633.858043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.49597 -39.92302 -37.93693 -35.31065 -34.67582 -32.72557 -31.59764 -31.26183 -30.36046 -28.40549 -26.37811 -25.34835 -23.81966 -22.30462 -21.68225 -21.35564 -20.90837 -20.19855 -19.21300 -18.67374 -17.02068 -16.62797 -16.19897 -15.73086 -15.23718 -15.02827 -14.65479 -14.57770 -14.43184 -14.02537 -13.80515 -13.54528 -13.44089 -13.12053 -13.03985 -12.72267 -12.24510 -12.11927 -11.94050 -11.74994 -11.62438 -11.53092 -11.16215 -10.99716 -10.59438 -10.53229 -10.17202 -10.05391 -9.99259 -9.97827 -9.72615 -9.46511 -8.86412 -8.59836 -8.40002 -7.94221 -6.97189 -5.92620 -3.28861 0.32064 1.19173 1.73229 2.13703 2.32913 2.63120 3.20249 3.25241 3.37249 3.52635 3.56227 4.53163 4.56204 4.56550 4.69539 4.91954 4.97579 5.06379 5.15566 5.28368 5.35450 5.45439 5.47757 5.62927 5.70539 5.75072 5.88212 5.90589 6.04380 6.11445 6.13549 6.16647 6.28269 6.38653 6.40015 6.44258 6.61125 6.65637 6.72334 6.73440 6.94951 7.04069 7.53939 7.97379 8.20724 8.34443 8.95323 9.74109 10.11290 11.23138 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002669 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.656383 B =10487.885341 C =10893.436569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 H 0.077 0.923 4 C 0.158 3.842 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.909 5.909 10 Si 0.881 3.119 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.129 3.871 15 C -0.143 4.143 16 C 0.158 3.842 17 H 0.086 0.914 18 N -0.714 5.714 19 C 0.589 3.411 20 O -0.531 6.531 21 C -0.231 4.231 22 C -0.034 4.034 23 C 0.024 3.976 24 N -0.557 5.557 25 H 0.420 0.580 26 C 0.057 3.943 27 C -0.172 4.172 28 C -0.188 4.188 29 S 0.164 5.836 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.026 0.974 34 H 0.068 0.932 35 H 0.262 0.738 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.395 0.605 41 H 0.149 0.851 42 H 0.178 0.822 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.052 4.560 -23.575 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.330 5.330 6 C -0.388 4.388 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.552 5.552 10 Si 0.712 3.288 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.183 4.183 16 C 0.055 3.945 17 H 0.104 0.896 18 N -0.364 5.364 19 C 0.374 3.626 20 O -0.409 6.409 21 C -0.351 4.351 22 C -0.070 4.070 23 C -0.090 4.090 24 N -0.158 5.158 25 H 0.257 0.743 26 C -0.077 4.077 27 C -0.201 4.201 28 C -0.310 4.310 29 S 0.427 5.573 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.229 0.771 41 H 0.167 0.833 42 H 0.195 0.805 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.666 4.754 -22.469 28.376 hybrid contribution 0.336 -1.906 -1.848 2.676 sum -16.331 2.847 -24.317 29.430 Atomic orbital electron populations 1.21779 0.95363 1.01751 1.01219 1.21986 0.94940 1.00967 0.95891 0.90461 1.20922 0.84340 0.97056 0.94513 1.44402 1.00773 1.71835 1.15970 1.18911 0.97740 1.14121 1.08019 0.89605 1.25266 0.96443 0.98077 0.97764 1.69834 1.04504 1.37180 1.43655 0.86967 0.77889 0.86910 0.77071 1.21661 1.23189 1.19328 1.21321 0.98088 0.94809 0.85489 1.22425 0.94337 1.02122 0.99427 1.21075 0.94068 0.97167 0.82228 0.89579 1.46098 1.65860 1.14119 1.10303 1.16836 0.77867 0.86072 0.81791 1.90843 1.50415 1.15317 1.84342 1.23842 1.14435 0.98601 0.98265 1.19239 0.98306 1.00396 0.89086 1.18001 1.10000 0.94954 0.85998 1.41912 1.54223 1.11816 1.07885 0.74264 1.21876 1.02242 0.83631 0.99956 1.20141 1.09817 1.00079 0.90087 1.23195 1.11119 0.97789 0.98931 1.83749 1.65038 1.06228 1.02275 0.92787 0.92372 0.93263 0.95619 0.91313 0.92790 0.95335 0.90778 0.92199 0.91472 0.77080 0.83331 0.80491 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.03 37.16 0.34 -1.47 16 2 C -0.12 -1.84 2.46 -90.50 -0.22 -2.06 16 3 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.16 3.05 5.80 -3.71 -0.02 3.02 16 5 N -0.61 -14.38 2.77 -172.32 -0.48 -14.86 16 6 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 7 H 0.09 2.53 8.05 -52.49 -0.42 2.10 16 8 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 9 N -0.91 -28.00 13.97 55.49 0.78 -27.23 16 10 Si 0.88 22.83 24.35 -169.99 -4.14 18.69 16 11 H -0.29 -7.31 6.70 56.52 0.38 -6.93 16 12 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 13 H -0.27 -6.84 6.46 56.52 0.36 -6.47 16 14 C 0.13 2.91 4.19 -3.72 -0.02 2.90 16 15 C -0.14 -2.71 5.65 -26.61 -0.15 -2.86 16 16 C 0.16 2.61 1.88 -67.89 -0.13 2.48 16 17 H 0.09 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.71 -10.09 4.36 -55.15 -0.24 -10.33 16 19 C 0.59 8.97 7.74 -12.96 -0.10 8.86 16 20 O -0.53 -9.86 16.43 5.16 0.08 -9.77 16 21 C -0.23 -2.94 6.38 -37.17 -0.24 -3.17 16 22 C -0.03 -0.40 9.88 -40.23 -0.40 -0.80 16 23 C 0.02 0.25 7.67 -84.01 -0.64 -0.40 16 24 N -0.56 -3.76 6.21 -10.89 -0.07 -3.83 16 25 H 0.42 1.56 8.96 -40.82 -0.37 1.19 16 26 C 0.06 0.32 11.85 -16.92 -0.20 0.12 16 27 C -0.17 -1.35 10.85 -39.61 -0.43 -1.78 16 28 C -0.19 -1.96 7.31 -38.29 -0.28 -2.24 16 29 S 0.16 1.72 22.29 -107.50 -2.40 -0.68 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.55 7.36 -51.93 -0.38 0.17 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 35 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 36 H 0.03 0.65 6.98 -51.93 -0.36 0.29 16 37 H 0.07 1.83 4.49 -51.93 -0.23 1.59 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.39 4.72 7.37 -40.82 -0.30 4.42 16 41 H 0.15 1.64 8.00 -52.48 -0.42 1.22 16 42 H 0.18 0.30 8.06 -52.48 -0.42 -0.12 16 43 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -34.43 356.62 -9.69 -44.12 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.87 Total: 2.70 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.73 Total: -4.19 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.01 Total: -56.25 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.69 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.40 Total: -0.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.43 -9.69 -44.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944447422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.498 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds