Wall clock time and date at job start Tue Mar 31 2020 18:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.52048 * 2 1 4 4 C 1.53192 * 109.48972 * 120.08639 * 2 1 3 5 5 N 1.46926 * 108.76427 * 174.59975 * 4 2 1 6 6 C 1.36938 * 120.62599 * 126.36122 * 5 4 2 7 7 H 1.08001 * 120.00314 * 332.81467 * 6 5 4 8 8 C 1.38811 * 119.99705 * 152.80966 * 6 5 4 9 9 N 1.31622 * 119.99921 * 159.75496 * 8 6 5 10 10 Si 1.86800 * 120.00249 * 339.75649 * 8 6 5 11 11 H 1.48497 * 109.47309 * 94.89892 * 10 8 6 12 12 H 1.48495 * 109.47285 * 214.89873 * 10 8 6 13 13 H 1.48503 * 109.47038 * 334.89945 * 10 8 6 14 14 C 1.46920 * 118.74084 * 306.38625 * 5 4 2 15 15 C 1.53187 * 108.77846 * 53.60902 * 14 5 4 16 16 C 1.53038 * 109.49882 * 239.91991 * 2 1 3 17 17 H 1.09001 * 109.46312 * 298.68798 * 16 2 1 18 18 N 1.46500 * 109.45891 * 58.66027 * 16 2 1 19 19 C 1.34782 * 119.99645 * 205.02973 * 18 16 2 20 20 O 1.21729 * 120.00174 * 359.97438 * 19 18 16 21 21 C 1.46424 * 119.99642 * 180.02562 * 19 18 16 22 22 C 1.35774 * 124.95826 * 179.97438 * 21 19 18 23 23 C 1.38871 * 115.18565 * 180.02562 * 22 21 19 24 24 N 1.39750 * 139.91115 * 179.97438 * 23 22 21 25 25 H 0.96995 * 125.63284 * 359.77436 * 24 23 22 26 26 C 1.36217 * 108.72686 * 180.02562 * 24 23 22 27 27 C 1.34502 * 109.30107 * 359.97438 * 26 24 23 28 28 C 1.38239 * 113.39197 * 0.02562 * 23 22 21 29 29 S 1.75616 * 124.95992 * 0.02562 * 21 19 18 30 30 H 1.09000 * 109.47003 * 180.08300 * 1 2 3 31 31 H 1.09001 * 109.47148 * 300.07728 * 1 2 3 32 32 H 1.09003 * 109.47100 * 60.08187 * 1 2 3 33 33 H 1.09005 * 109.59894 * 54.81309 * 4 2 1 34 34 H 1.09000 * 109.58095 * 294.38100 * 4 2 1 35 35 H 0.96999 * 119.99879 * 180.02562 * 9 8 6 36 36 H 1.09007 * 109.58554 * 293.81766 * 14 5 4 37 37 H 1.09006 * 109.58472 * 173.39939 * 14 5 4 38 38 H 1.08997 * 109.50101 * 185.41431 * 15 14 5 39 39 H 1.08999 * 109.49878 * 65.31527 * 15 14 5 40 40 H 0.96996 * 120.00386 * 25.03049 * 18 16 2 41 41 H 1.08007 * 122.40511 * 0.03424 * 22 21 19 42 42 H 1.08008 * 125.34376 * 179.97438 * 26 24 23 43 43 H 1.07998 * 126.07320 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0411 -0.7240 1.2496 5 7 3.5044 -0.8289 1.1696 6 6 4.2932 -0.3782 2.1942 7 1 3.9427 0.4165 2.8362 8 6 5.5433 -0.9426 2.4078 9 7 6.4528 -0.2861 3.0963 10 14 5.9346 -2.6339 1.7180 11 1 6.6144 -2.4882 0.4058 12 1 6.8257 -3.3584 2.6593 13 1 4.6747 -3.3997 1.5404 14 6 4.1053 -1.4262 -0.0307 15 6 3.5709 -0.6946 -1.2659 16 6 2.0408 -0.7231 -1.2483 17 1 1.6970 -1.7573 -1.2352 18 7 1.5265 -0.0529 -2.4453 19 6 1.3979 -0.7385 -3.5986 20 8 1.7096 -1.9142 -3.6458 21 6 0.8844 -0.0685 -4.7950 22 6 0.7147 -0.6599 -6.0054 23 6 0.2134 0.1671 -7.0020 24 7 -0.1437 0.1187 -8.3523 25 1 -0.0825 -0.6615 -8.9254 26 6 -0.5865 1.3497 -8.7319 27 6 -0.5289 2.1866 -7.6806 28 6 -0.0244 1.4600 -6.5744 29 16 0.3992 1.6174 -4.8743 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6053 -1.7219 1.2979 34 1 1.7634 -0.1581 2.1388 35 1 7.3265 -0.6804 3.2453 36 1 3.8379 -2.4815 -0.0867 37 1 5.1897 -1.3239 0.0140 38 1 3.9336 -1.1891 -2.1670 39 1 3.9157 0.3393 -1.2539 40 1 1.2785 0.8840 -2.4078 41 1 0.9525 -1.6988 -6.1804 42 1 -0.9298 1.6123 -9.7218 43 1 -0.8150 3.2280 -7.6804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944447422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:48 Heat of formation + Delta-G solvation = 34.828018 kcal Electronic energy + Delta-G solvation = -25918.968145 eV Core-core repulsion = 22284.089017 eV Total energy + Delta-G solvation = -3634.879128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.12667 -41.18635 -39.40953 -36.43740 -35.97482 -34.28866 -33.38451 -32.09161 -31.79075 -29.29704 -27.83073 -26.87146 -24.99852 -23.64924 -23.09185 -22.51390 -21.64097 -21.46176 -20.41250 -19.41723 -18.81193 -17.84748 -17.60076 -16.84567 -16.47847 -16.27753 -16.11744 -15.58742 -15.50667 -15.15802 -15.12257 -14.95120 -14.75419 -14.38245 -14.28849 -13.86653 -13.67783 -13.59852 -13.31752 -12.97351 -12.84137 -12.73899 -12.51305 -12.23357 -12.12107 -11.99485 -11.92986 -11.75054 -11.49523 -11.39449 -11.17486 -10.75742 -10.67197 -10.15373 -9.14065 -8.97508 -8.62323 -8.17426 -5.49033 -0.51601 0.41850 0.94840 1.28672 1.37255 1.39250 1.47763 1.72666 1.88386 2.14341 2.28765 2.40030 3.02851 3.31521 3.60554 3.73924 3.88641 3.95599 4.07467 4.16463 4.20114 4.22722 4.38949 4.54528 4.56807 4.58435 4.68909 4.77227 4.79364 4.88859 4.89237 4.97324 5.04324 5.05634 5.10300 5.16926 5.29206 5.39603 5.50990 5.56026 5.79347 5.85506 6.12465 6.40478 6.60521 6.88911 7.06299 7.60177 8.01576 9.02077 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002669 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.656383 B =10487.885341 C =10893.436569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 H 0.077 0.923 4 C 0.152 3.848 5 N -0.619 5.619 6 C -0.243 4.243 7 H 0.062 0.938 8 C -0.032 4.032 9 N -0.954 5.954 10 Si 0.938 3.062 11 H -0.282 1.282 12 H -0.309 1.309 13 H -0.262 1.262 14 C 0.127 3.873 15 C -0.133 4.133 16 C 0.167 3.833 17 H 0.074 0.926 18 N -0.704 5.704 19 C 0.591 3.409 20 O -0.573 6.573 21 C -0.268 4.268 22 C -0.025 4.025 23 C -0.006 4.006 24 N -0.547 5.547 25 H 0.434 0.566 26 C 0.090 3.910 27 C -0.199 4.199 28 C -0.197 4.197 29 S 0.178 5.822 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.261 0.739 36 H 0.029 0.971 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.408 0.592 41 H 0.146 0.854 42 H 0.226 0.774 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 5.270 -26.959 33.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.095 0.905 4 C 0.027 3.973 5 N -0.343 5.343 6 C -0.373 4.373 7 H 0.079 0.921 8 C -0.227 4.227 9 N -0.600 5.600 10 Si 0.767 3.233 11 H -0.210 1.210 12 H -0.238 1.238 13 H -0.186 1.186 14 C 0.001 3.999 15 C -0.173 4.173 16 C 0.063 3.937 17 H 0.092 0.908 18 N -0.354 5.354 19 C 0.379 3.621 20 O -0.454 6.454 21 C -0.388 4.388 22 C -0.061 4.061 23 C -0.119 4.119 24 N -0.149 5.149 25 H 0.275 0.725 26 C -0.045 4.045 27 C -0.228 4.228 28 C -0.320 4.320 29 S 0.441 5.559 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.244 0.756 41 H 0.163 0.837 42 H 0.243 0.757 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.302 5.462 -25.882 32.745 hybrid contribution 1.008 -2.018 -0.993 2.465 sum -18.293 3.445 -26.875 32.692 Atomic orbital electron populations 1.21727 0.92430 1.02346 1.02848 1.21805 0.97202 1.00008 0.93491 0.90481 1.21147 0.81651 0.98010 0.96494 1.44527 1.02469 1.71880 1.15427 1.18898 0.97784 1.12675 1.07900 0.92069 1.25820 0.96755 1.00988 0.99126 1.69943 1.05056 1.38646 1.46392 0.86043 0.77717 0.83027 0.76477 1.20968 1.23801 1.18636 1.21277 0.96880 0.95209 0.86549 1.22268 0.96285 1.01292 0.97492 1.20788 0.92271 0.97017 0.83629 0.90825 1.45845 1.65504 1.14599 1.09427 1.17140 0.76957 0.85592 0.82421 1.90810 1.52407 1.17123 1.85077 1.23525 1.17442 1.00178 0.97637 1.19344 0.97022 1.00425 0.89344 1.17953 1.11720 0.94746 0.87501 1.42058 1.53130 1.13015 1.06743 0.72509 1.22701 0.98471 0.82196 1.01150 1.20566 1.10982 1.01472 0.89810 1.23625 1.10683 0.98473 0.99194 1.83522 1.65000 1.04339 1.02989 0.92726 0.90946 0.91477 0.94794 0.91202 0.92982 0.95335 0.93101 0.92227 0.91663 0.75597 0.83658 0.75736 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.03 71.98 0.65 -2.44 16 2 C -0.10 -3.13 2.46 -10.72 -0.03 -3.16 16 3 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.15 5.73 5.80 86.36 0.50 6.23 16 5 N -0.62 -29.43 2.77 -699.10 -1.94 -31.37 16 6 C -0.24 -13.80 10.04 84.03 0.84 -12.96 16 7 H 0.06 3.72 8.05 -2.91 -0.02 3.70 16 8 C -0.03 -1.90 5.24 84.86 0.44 -1.46 16 9 N -0.95 -60.57 13.97 21.65 0.30 -60.27 16 10 Si 0.94 48.28 24.35 68.60 1.67 49.95 16 11 H -0.28 -14.09 6.70 99.48 0.67 -13.42 16 12 H -0.31 -16.06 7.11 99.48 0.71 -15.35 16 13 H -0.26 -13.02 6.46 99.48 0.64 -12.38 16 14 C 0.13 5.72 4.19 86.36 0.36 6.08 16 15 C -0.13 -5.03 5.65 30.67 0.17 -4.86 16 16 C 0.17 5.41 1.88 45.02 0.08 5.49 16 17 H 0.07 2.62 7.58 -2.39 -0.02 2.61 16 18 N -0.70 -19.29 4.36 -446.59 -1.95 -21.23 16 19 C 0.59 17.90 7.74 86.37 0.67 18.57 16 20 O -0.57 -21.55 16.43 -4.44 -0.07 -21.62 16 21 C -0.27 -6.69 6.38 23.83 0.15 -6.54 16 22 C -0.02 -0.56 9.88 21.85 0.22 -0.35 16 23 C -0.01 -0.12 7.67 38.03 0.29 0.18 16 24 N -0.55 -5.55 6.21 -188.38 -1.17 -6.71 16 25 H 0.43 1.75 8.96 -92.71 -0.83 0.92 16 26 C 0.09 0.61 11.85 83.16 0.99 1.60 16 27 C -0.20 -2.44 10.85 22.25 0.24 -2.20 16 28 C -0.20 -3.67 7.31 23.11 0.17 -3.51 16 29 S 0.18 3.51 22.29 -56.49 -1.26 2.25 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.31 7.36 -2.39 -0.02 1.30 16 33 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 35 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.03 1.30 6.98 -2.38 -0.02 1.28 16 37 H 0.05 2.53 4.49 -2.38 -0.01 2.52 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.41 9.17 7.37 -92.71 -0.68 8.48 16 41 H 0.15 3.24 8.00 -2.91 -0.02 3.21 16 42 H 0.23 -0.70 8.06 -2.91 -0.02 -0.73 16 43 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -77.11 356.62 0.78 -76.33 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -0.56 Total: 12.01 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 5.76 Total: 0.68 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -4.75 Total: -119.59 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.62 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.67 Total: 49.95 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.26 Total: 2.25 kcal Total: -77.11 0.78 -76.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944447422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.159 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds