Wall clock time and date at job start Tue Mar 31 2020 18:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.52424 * 2 1 4 4 C 1.53194 * 109.49599 * 120.07812 * 2 1 3 5 5 N 1.46934 * 108.89214 * 174.65762 * 4 2 1 6 6 C 1.36935 * 120.62776 * 126.34278 * 5 4 2 7 7 H 1.08003 * 120.00334 * 331.82288 * 6 5 4 8 8 C 1.38816 * 120.00109 * 151.82327 * 6 5 4 9 9 N 1.31624 * 119.99356 * 343.07479 * 8 6 5 10 10 Si 1.86793 * 120.00395 * 163.07501 * 8 6 5 11 11 H 1.48500 * 109.47341 * 59.99642 * 10 8 6 12 12 H 1.48504 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46651 * 299.99824 * 10 8 6 14 14 C 1.46917 * 118.73910 * 306.32295 * 5 4 2 15 15 C 1.53195 * 108.77828 * 53.60508 * 14 5 4 16 16 C 1.53042 * 109.31219 * 305.36616 * 15 14 5 17 17 H 1.09001 * 109.45781 * 181.37032 * 16 15 14 18 18 N 1.46495 * 109.46017 * 301.34378 * 16 15 14 19 19 C 1.34774 * 119.99780 * 274.99897 * 18 16 15 20 20 O 1.21729 * 120.00418 * 0.02562 * 19 18 16 21 21 C 1.46413 * 120.00147 * 180.02562 * 19 18 16 22 22 C 1.35777 * 124.96352 * 179.71800 * 21 19 18 23 23 C 1.38871 * 115.18736 * 179.82731 * 22 21 19 24 24 N 1.39746 * 139.91560 * 180.11859 * 23 22 21 25 25 H 0.96999 * 125.62979 * 0.34699 * 24 23 22 26 26 C 1.36208 * 108.73494 * 180.32588 * 24 23 22 27 27 C 1.34513 * 109.29575 * 359.97438 * 26 24 23 28 28 C 1.38243 * 113.39432 * 0.45857 * 23 22 21 29 29 S 1.75619 * 124.95694 * 0.02562 * 21 19 18 30 30 H 1.09003 * 109.47521 * 299.92323 * 1 2 3 31 31 H 1.09003 * 109.47235 * 59.92035 * 1 2 3 32 32 H 1.08996 * 109.47161 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58905 * 54.80073 * 4 2 1 34 34 H 1.09001 * 109.58865 * 294.51659 * 4 2 1 35 35 H 0.96997 * 119.99488 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58812 * 173.39821 * 14 5 4 37 37 H 1.09007 * 109.58397 * 293.82038 * 14 5 4 38 38 H 1.08998 * 109.49163 * 65.31558 * 15 14 5 39 39 H 1.08999 * 109.49638 * 185.38153 * 15 14 5 40 40 H 0.96999 * 119.99976 * 94.99935 * 18 16 15 41 41 H 1.08007 * 122.40609 * 0.02764 * 22 21 19 42 42 H 1.08004 * 125.35139 * 180.02562 * 26 24 23 43 43 H 1.08005 * 126.07020 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7238 1.2496 5 7 3.5048 -0.8290 1.1731 6 6 4.2912 -0.3780 2.1994 7 1 3.9462 0.4277 2.8304 8 6 5.5321 -0.9565 2.4288 9 7 5.8194 -2.1281 1.9023 10 14 6.7941 -0.0722 3.4845 11 1 6.2398 0.1394 4.8458 12 1 8.0278 -0.8940 3.5740 13 1 7.1183 1.2414 2.8723 14 6 4.1083 -1.4277 -0.0251 15 6 3.5766 -0.6974 -1.2624 16 6 2.0465 -0.7257 -1.2483 17 1 1.6659 -0.2278 -2.1401 18 7 1.5842 -2.1156 -1.2303 19 6 1.4575 -2.7986 -2.3853 20 8 1.7276 -2.2607 -3.4433 21 6 0.9949 -4.1876 -2.3675 22 6 0.8261 -4.9656 -3.4673 23 6 0.3810 -6.2567 -3.2153 24 7 0.0521 -7.4277 -3.9035 25 1 0.0955 -7.5493 -4.8648 26 6 -0.3392 -8.3701 -3.0012 27 6 -0.2745 -7.8524 -1.7614 28 6 0.1785 -6.5152 -1.8725 29 16 0.5700 -5.0882 -0.9209 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7216 1.2981 34 1 1.7615 -0.1592 2.1391 35 1 6.6863 -2.5325 2.0629 36 1 5.1925 -1.3255 0.0218 37 1 3.8407 -2.4830 -0.0806 38 1 3.9215 0.3365 -1.2507 39 1 3.9418 -1.1926 -2.1621 40 1 1.3692 -2.5444 -0.3872 41 1 1.0268 -4.6072 -4.4662 42 1 -0.6514 -9.3753 -3.2432 43 1 -0.5239 -8.3654 -0.8443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944447423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:53 Heat of formation + Delta-G solvation = 54.857465 kcal Electronic energy + Delta-G solvation = -26416.917780 eV Core-core repulsion = 22782.907193 eV Total energy + Delta-G solvation = -3634.010586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29354 -39.80937 -37.66515 -35.04950 -34.20781 -32.51894 -31.15151 -31.03731 -30.13650 -28.17009 -25.87051 -25.29599 -23.94551 -22.19750 -21.61388 -21.07670 -20.85345 -19.69991 -18.75638 -18.27671 -16.96753 -16.58551 -15.51743 -15.40881 -15.03542 -14.81221 -14.56217 -14.47442 -13.94319 -13.79893 -13.70607 -13.60139 -13.29372 -12.91497 -12.83587 -12.51661 -12.10723 -12.03581 -11.55904 -11.42312 -11.34550 -11.05329 -10.87516 -10.79223 -10.66863 -10.34983 -10.19747 -10.03009 -9.78250 -9.77910 -9.71239 -9.40147 -8.64069 -8.43730 -8.18129 -7.71863 -6.65366 -5.76918 -3.20342 0.54258 1.43318 1.98226 2.33314 2.53601 2.82799 3.39698 3.42391 3.45897 3.46863 3.53956 4.50461 4.73699 4.75317 4.91459 5.14579 5.26874 5.33715 5.34726 5.39591 5.52354 5.63589 5.67550 5.83055 5.88919 5.96447 6.01636 6.11268 6.18500 6.30742 6.36135 6.37511 6.47653 6.59664 6.66005 6.68673 6.78426 6.92516 6.99935 7.23140 7.39710 7.69875 7.80789 7.81263 8.44755 8.46222 9.22317 9.85513 10.42018 11.31047 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.003312 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.896767 B = 8453.323042 C = 9241.475743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.255 4.255 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.902 3.098 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.174 3.826 15 C -0.155 4.155 16 C 0.161 3.839 17 H 0.075 0.925 18 N -0.703 5.703 19 C 0.590 3.410 20 O -0.540 6.540 21 C -0.228 4.228 22 C -0.039 4.039 23 C 0.025 3.975 24 N -0.559 5.559 25 H 0.418 0.582 26 C 0.053 3.947 27 C -0.171 4.171 28 C -0.191 4.191 29 S 0.176 5.824 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.012 0.988 34 H 0.057 0.943 35 H 0.254 0.746 36 H 0.086 0.914 37 H 0.019 0.981 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.400 0.600 41 H 0.148 0.852 42 H 0.177 0.823 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.402 -9.799 -9.908 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.102 0.898 4 C 0.024 3.976 5 N -0.313 5.313 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.732 3.268 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.057 3.943 17 H 0.093 0.907 18 N -0.354 5.354 19 C 0.375 3.625 20 O -0.420 6.420 21 C -0.349 4.349 22 C -0.075 4.075 23 C -0.089 4.089 24 N -0.160 5.160 25 H 0.256 0.744 26 C -0.080 4.080 27 C -0.200 4.200 28 C -0.313 4.313 29 S 0.439 5.561 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.037 0.963 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.236 0.764 41 H 0.165 0.835 42 H 0.194 0.806 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.025 -9.119 -9.190 19.087 hybrid contribution 0.701 -0.414 -1.020 1.305 sum -13.324 -9.533 -10.210 19.305 Atomic orbital electron populations 1.21767 0.95687 1.01411 1.01171 1.22015 0.94606 1.00766 0.96653 0.89835 1.20915 0.86180 0.96097 0.94407 1.44047 0.99087 1.71504 1.16645 1.19116 0.98685 1.11956 1.08723 0.91743 1.25043 0.99917 0.95312 0.99187 1.70029 1.22209 1.14370 1.47789 0.86380 0.81081 0.79083 0.80248 1.20916 1.21680 1.21065 1.20730 0.99267 0.92989 0.82203 1.22580 0.94064 1.02019 1.00857 1.21005 0.95200 0.79927 0.98135 0.90651 1.45972 1.66704 1.14545 1.08144 1.16790 0.77580 0.83603 0.84479 1.90796 1.51460 1.69155 1.30551 1.23866 1.14498 0.99347 0.97151 1.19177 0.99196 0.89269 0.99904 1.18001 1.10558 0.89876 0.90434 1.41872 1.56009 1.09191 1.08950 0.74423 1.21833 1.03048 0.94746 0.88375 1.20136 1.10232 0.92074 0.97585 1.23254 1.11451 1.00407 0.96207 1.84018 1.66269 1.00506 1.05297 0.92634 0.93202 0.93066 0.96988 0.92399 0.93587 0.89577 0.96325 0.91643 0.92606 0.76415 0.83476 0.80623 0.83566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.07 37.15 0.34 -1.60 16 2 C -0.12 -2.00 2.68 -90.34 -0.24 -2.24 16 3 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 4 C 0.15 3.00 5.49 -3.71 -0.02 2.98 16 5 N -0.59 -14.37 2.99 -172.31 -0.52 -14.89 16 6 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16 7 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 8 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 9 N -0.90 -25.99 11.20 55.49 0.62 -25.37 16 10 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.17 4.16 5.04 -3.71 -0.02 4.14 16 15 C -0.16 -3.13 5.77 -26.61 -0.15 -3.29 16 16 C 0.16 2.85 2.23 -67.73 -0.15 2.70 16 17 H 0.08 1.33 7.57 -51.93 -0.39 0.94 16 18 N -0.70 -12.02 3.60 -55.00 -0.20 -12.22 16 19 C 0.59 10.35 7.74 -12.97 -0.10 10.25 16 20 O -0.54 -10.77 16.43 5.16 0.08 -10.68 16 21 C -0.23 -3.50 6.38 -37.17 -0.24 -3.74 16 22 C -0.04 -0.54 9.88 -40.23 -0.40 -0.94 16 23 C 0.02 0.31 7.67 -84.01 -0.64 -0.34 16 24 N -0.56 -4.76 6.21 -10.89 -0.07 -4.83 16 25 H 0.42 2.20 8.96 -40.82 -0.37 1.83 16 26 C 0.05 0.40 11.85 -16.93 -0.20 0.20 16 27 C -0.17 -1.72 10.84 -39.61 -0.43 -2.15 16 28 C -0.19 -2.46 7.31 -38.29 -0.28 -2.74 16 29 S 0.18 2.42 22.29 -107.50 -2.40 0.03 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 33 H 0.01 0.24 6.64 -51.93 -0.34 -0.10 16 34 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 35 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 37 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.40 6.68 5.79 -40.82 -0.24 6.44 16 41 H 0.15 1.87 8.00 -52.48 -0.42 1.45 16 42 H 0.18 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -32.55 359.37 -10.64 -43.19 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.79 Total: 6.50 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.77 Total: -3.74 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: -0.16 Total: -57.30 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.40 Total: 0.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.55 -10.64 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944447423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.047 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds