Wall clock time and date at job start Tue Mar 31 2020 18:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.52424 * 2 1 4 4 C 1.53194 * 109.49599 * 120.07812 * 2 1 3 5 5 N 1.46934 * 108.89214 * 174.65762 * 4 2 1 6 6 C 1.36935 * 120.62776 * 126.34278 * 5 4 2 7 7 H 1.08003 * 120.00334 * 331.82288 * 6 5 4 8 8 C 1.38816 * 120.00109 * 151.82327 * 6 5 4 9 9 N 1.31624 * 119.99356 * 343.07479 * 8 6 5 10 10 Si 1.86793 * 120.00395 * 163.07501 * 8 6 5 11 11 H 1.48500 * 109.47341 * 59.99642 * 10 8 6 12 12 H 1.48504 * 109.47235 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46651 * 299.99824 * 10 8 6 14 14 C 1.46917 * 118.73910 * 306.32295 * 5 4 2 15 15 C 1.53195 * 108.77828 * 53.60508 * 14 5 4 16 16 C 1.53042 * 109.31219 * 305.36616 * 15 14 5 17 17 H 1.09001 * 109.45781 * 181.37032 * 16 15 14 18 18 N 1.46495 * 109.46017 * 301.34378 * 16 15 14 19 19 C 1.34774 * 119.99780 * 274.99897 * 18 16 15 20 20 O 1.21729 * 120.00418 * 0.02562 * 19 18 16 21 21 C 1.46413 * 120.00147 * 180.02562 * 19 18 16 22 22 C 1.35777 * 124.96352 * 179.71800 * 21 19 18 23 23 C 1.38871 * 115.18736 * 179.82731 * 22 21 19 24 24 N 1.39746 * 139.91560 * 180.11859 * 23 22 21 25 25 H 0.96999 * 125.62979 * 0.34699 * 24 23 22 26 26 C 1.36208 * 108.73494 * 180.32588 * 24 23 22 27 27 C 1.34513 * 109.29575 * 359.97438 * 26 24 23 28 28 C 1.38243 * 113.39432 * 0.45857 * 23 22 21 29 29 S 1.75619 * 124.95694 * 0.02562 * 21 19 18 30 30 H 1.09003 * 109.47521 * 299.92323 * 1 2 3 31 31 H 1.09003 * 109.47235 * 59.92035 * 1 2 3 32 32 H 1.08996 * 109.47161 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58905 * 54.80073 * 4 2 1 34 34 H 1.09001 * 109.58865 * 294.51659 * 4 2 1 35 35 H 0.96997 * 119.99488 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.58812 * 173.39821 * 14 5 4 37 37 H 1.09007 * 109.58397 * 293.82038 * 14 5 4 38 38 H 1.08998 * 109.49163 * 65.31558 * 15 14 5 39 39 H 1.08999 * 109.49638 * 185.38153 * 15 14 5 40 40 H 0.96999 * 119.99976 * 94.99935 * 18 16 15 41 41 H 1.08007 * 122.40609 * 0.02764 * 22 21 19 42 42 H 1.08004 * 125.35139 * 180.02562 * 26 24 23 43 43 H 1.08005 * 126.07020 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0412 -0.7238 1.2496 5 7 3.5048 -0.8290 1.1731 6 6 4.2912 -0.3780 2.1994 7 1 3.9462 0.4277 2.8304 8 6 5.5321 -0.9565 2.4288 9 7 5.8194 -2.1281 1.9023 10 14 6.7941 -0.0722 3.4845 11 1 6.2398 0.1394 4.8458 12 1 8.0278 -0.8940 3.5740 13 1 7.1183 1.2414 2.8723 14 6 4.1083 -1.4277 -0.0251 15 6 3.5766 -0.6974 -1.2624 16 6 2.0465 -0.7257 -1.2483 17 1 1.6659 -0.2278 -2.1401 18 7 1.5842 -2.1156 -1.2303 19 6 1.4575 -2.7986 -2.3853 20 8 1.7276 -2.2607 -3.4433 21 6 0.9949 -4.1876 -2.3675 22 6 0.8261 -4.9656 -3.4673 23 6 0.3810 -6.2567 -3.2153 24 7 0.0521 -7.4277 -3.9035 25 1 0.0955 -7.5493 -4.8648 26 6 -0.3392 -8.3701 -3.0012 27 6 -0.2745 -7.8524 -1.7614 28 6 0.1785 -6.5152 -1.8725 29 16 0.5700 -5.0882 -0.9209 30 1 -0.3634 0.5126 0.8907 31 1 -0.3634 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6052 -1.7216 1.2981 34 1 1.7615 -0.1592 2.1391 35 1 6.6863 -2.5325 2.0629 36 1 5.1925 -1.3255 0.0218 37 1 3.8407 -2.4830 -0.0806 38 1 3.9215 0.3365 -1.2507 39 1 3.9418 -1.1926 -2.1621 40 1 1.3692 -2.5444 -0.3872 41 1 1.0268 -4.6072 -4.4662 42 1 -0.6514 -9.3753 -3.2432 43 1 -0.5239 -8.3654 -0.8443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944447423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:52 Heat of formation + Delta-G solvation = 34.815025 kcal Electronic energy + Delta-G solvation = -26417.786885 eV Core-core repulsion = 22782.907193 eV Total energy + Delta-G solvation = -3634.879692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.12051 -41.23282 -39.19379 -36.17097 -35.86961 -34.02507 -32.89432 -31.97426 -31.74605 -29.21526 -27.39834 -27.03075 -25.13427 -23.73895 -22.90317 -22.59468 -21.70112 -20.84241 -20.19429 -19.35561 -18.68268 -17.91384 -16.90934 -16.71141 -16.48731 -16.31886 -15.76925 -15.65487 -15.40807 -15.35086 -15.00934 -14.76738 -14.57948 -14.37343 -14.18870 -13.65956 -13.55100 -13.16050 -12.96715 -12.95134 -12.69713 -12.53809 -12.51252 -12.36673 -12.22170 -11.95641 -11.92413 -11.67896 -11.49614 -11.19591 -11.09069 -10.66707 -10.51463 -10.09135 -9.13552 -8.66095 -8.62975 -7.85021 -5.30928 -0.49284 0.42761 0.98251 1.39159 1.47823 1.50742 1.56897 1.72965 1.94591 2.18039 2.34863 2.52747 3.29907 3.63286 3.70703 3.82080 3.96790 4.06530 4.11676 4.17085 4.23969 4.40238 4.55950 4.58435 4.65349 4.73477 4.76607 4.81532 4.96960 4.99480 5.01602 5.06709 5.09533 5.16086 5.29753 5.42123 5.47799 5.55056 5.55680 5.65948 5.73561 5.79372 6.39986 6.43834 6.62984 7.08528 7.15768 7.86851 8.39164 9.20794 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.003312 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.896767 B = 8453.323042 C = 9241.475743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 H 0.084 0.916 4 C 0.148 3.852 5 N -0.606 5.606 6 C -0.262 4.262 7 H 0.070 0.930 8 C -0.050 4.050 9 N -0.933 5.933 10 Si 0.966 3.034 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.280 1.280 14 C 0.188 3.812 15 C -0.144 4.144 16 C 0.166 3.834 17 H 0.083 0.917 18 N -0.701 5.701 19 C 0.591 3.409 20 O -0.572 6.572 21 C -0.267 4.267 22 C -0.022 4.022 23 C -0.004 4.004 24 N -0.544 5.544 25 H 0.436 0.564 26 C 0.094 3.906 27 C -0.202 4.202 28 C -0.196 4.196 29 S 0.154 5.846 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.015 0.985 34 H 0.062 0.938 35 H 0.248 0.752 36 H 0.048 0.952 37 H -0.004 1.004 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.401 0.599 41 H 0.152 0.848 42 H 0.230 0.770 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.470 -11.036 -10.513 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.102 0.898 4 C 0.023 3.977 5 N -0.329 5.329 6 C -0.392 4.392 7 H 0.088 0.912 8 C -0.245 4.245 9 N -0.579 5.579 10 Si 0.794 3.206 11 H -0.199 1.199 12 H -0.224 1.224 13 H -0.206 1.206 14 C 0.062 3.938 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.101 0.899 18 N -0.351 5.351 19 C 0.378 3.622 20 O -0.454 6.454 21 C -0.387 4.387 22 C -0.059 4.059 23 C -0.117 4.117 24 N -0.147 5.147 25 H 0.277 0.723 26 C -0.042 4.042 27 C -0.231 4.231 28 C -0.319 4.319 29 S 0.418 5.582 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.014 0.986 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.238 0.762 41 H 0.169 0.831 42 H 0.246 0.754 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.126 -10.329 -9.810 21.516 hybrid contribution 1.252 -0.247 -0.896 1.559 sum -14.874 -10.576 -10.706 21.159 Atomic orbital electron populations 1.21704 0.92752 1.02065 1.02703 1.21873 0.96880 0.99880 0.94072 0.89756 1.21086 0.83596 0.96740 0.96308 1.44251 1.00961 1.71455 1.16227 1.19481 0.99214 1.11728 1.08805 0.91227 1.25791 1.01793 0.95978 1.00953 1.70193 1.22173 1.15894 1.49648 0.85370 0.78412 0.77769 0.79045 1.19905 1.22350 1.20625 1.20391 0.97142 0.92299 0.83939 1.22409 0.96235 1.01296 0.98457 1.20923 0.93123 0.80696 0.99089 0.89911 1.45913 1.66589 1.14307 1.08283 1.17075 0.76769 0.84396 0.83923 1.90757 1.53129 1.70157 1.31395 1.23585 1.18035 0.98765 0.98339 1.19328 0.97108 0.89810 0.99605 1.17939 1.12312 0.90568 0.90911 1.42003 1.54563 1.07947 1.10146 0.72347 1.22694 0.98657 0.95815 0.87003 1.20571 1.11746 0.91117 0.99683 1.23616 1.11065 1.01065 0.96189 1.83914 1.67128 1.01746 1.05443 0.90976 0.91799 0.92891 0.96705 0.91944 0.94289 0.93312 0.98577 0.91421 0.93363 0.76250 0.83081 0.75404 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.07 71.98 0.65 -2.73 16 2 C -0.11 -3.46 2.68 -10.61 -0.03 -3.48 16 3 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 4 C 0.15 5.86 5.49 86.36 0.47 6.33 16 5 N -0.61 -30.10 2.99 -699.07 -2.09 -32.19 16 6 C -0.26 -14.31 9.58 84.03 0.81 -13.50 16 7 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 8 C -0.05 -2.78 4.92 84.86 0.42 -2.37 16 9 N -0.93 -55.92 11.20 21.65 0.24 -55.68 16 10 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.19 9.42 5.04 86.37 0.44 9.85 16 15 C -0.14 -5.99 5.77 30.67 0.18 -5.82 16 16 C 0.17 5.90 2.23 45.12 0.10 6.00 16 17 H 0.08 2.88 7.57 -2.39 -0.02 2.86 16 18 N -0.70 -24.54 3.60 -446.13 -1.61 -26.15 16 19 C 0.59 21.41 7.74 86.37 0.67 22.08 16 20 O -0.57 -23.45 16.43 -4.44 -0.07 -23.52 16 21 C -0.27 -8.45 6.38 23.83 0.15 -8.30 16 22 C -0.02 -0.60 9.88 21.85 0.22 -0.39 16 23 C 0.00 -0.10 7.67 38.03 0.29 0.19 16 24 N -0.54 -7.41 6.21 -188.38 -1.17 -8.58 16 25 H 0.44 2.94 8.96 -92.71 -0.83 2.11 16 26 C 0.09 0.98 11.85 83.16 0.99 1.97 16 27 C -0.20 -3.50 10.84 22.25 0.24 -3.26 16 28 C -0.20 -4.85 7.31 23.11 0.17 -4.68 16 29 S 0.15 4.38 22.29 -56.49 -1.26 3.12 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.05 1.32 7.55 -2.39 -0.02 1.30 16 33 H 0.02 0.59 6.64 -2.39 -0.02 0.58 16 34 H 0.06 2.39 7.93 -2.39 -0.02 2.38 16 35 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 36 H 0.05 2.79 6.06 -2.39 -0.01 2.78 16 37 H 0.00 -0.21 7.74 -2.38 -0.02 -0.22 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.04 16 40 H 0.40 13.81 5.79 -92.71 -0.54 13.27 16 41 H 0.15 3.87 8.00 -2.91 -0.02 3.85 16 42 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -73.48 359.37 1.52 -71.96 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.31 Total: 21.93 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.76 Total: 1.89 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.63 Total: -122.60 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.07 Total: -23.52 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.26 Total: 3.12 kcal Total: -73.48 1.52 -71.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944447423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.776 kcal (2) G-P(sol) polarization free energy of solvation -73.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds